Rw2G039830

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000181
Physical Location & Seq
Forward (+)
65326798 .. 65327906
1109 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G039830.1

Sequence Viewer

Length: 516 bp
ATGACTCTTGTCGAATCAGAATTCTCCAAGGATCCGAACCCGAACCCGAACCAGGTCCCGCCGGAGGCGGACGACAAGATCCAGACTCATGGAAAAAACAAAGCTGCTGAAGACTCTCTGTCTCAACTTGAAGTAGAGGAGGAGGAGGAAGAGGAAGAGGAAGAAGAAGATGATGATGATGATGATGAAGAAGAAGCAGAAGAAGAAGAAGAAGAAGAATTTGAGATGTGTGAAGTTTGTTTGAAGGACAAGGAACACTGGACAGATGAATGCCCATACCTGGTTCGTATCCCAAACCCAATGGAAGTAACTCTTGGCAAAGGTTATTATATGGTTTGTGTGCACTGTAATCTGAGGGGACGTGCTATTGTCAAGGTCTGTGGTATTTGTGAGGGCGTACGCCACTGGTCTGCAGAGTGCCCAAAAAAACACTTATTACAAAAGCAAAAGAGTCTGTTGGAGTGTGCTGCTGAATATCGGTCGTGGTTGGCTACCAAAAAATGTCAAGCTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

171

Amino Acids

19.71

Weight (kDa)

4.37

Isoelectric Point (pI)

65.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
eIF3g PF12353 42 - 93 7.2e-06 Eukaryotic translation initiation factor 3 subunit G
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000181)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 59, 68
AclWI GGATC 3 cut(s) 26, 39, 73
AcsI RAATTY 2 cut(s) 20, 218
AcuI CTGAAG 1 cut(s) 129
AfaI GTAC 1 cut(s) 399
AfiI CCNNNNNNNGG 3 cut(s) 52, 64, 280
AgsI TTSAA 2 cut(s) 131, 244
AhdI GACNNNNNGTC 1 cut(s) 118
AjiI CACGTC 1 cut(s) 362
AjnI CCWGG 2 cut(s) 51, 279
AjuI GAANNNNNNNTTGG 2 cut(s) 297, 329
AluBI AGCT 2 cut(s) 104, 509
AluI AGCT 2 cut(s) 104, 509
Alw21I GWGCWC 1 cut(s) 345
Alw26I GTCTC 1 cut(s) 126
Alw44I GTGCAC 1 cut(s) 341
AlwI GGATC 3 cut(s) 26, 39, 73
ApaLI GTGCAC 1 cut(s) 341
ApeKI GCWGC 3 cut(s) 104, 467, 509
ApoI RAATTY 2 cut(s) 20, 218
AspS9I GGNCC 1 cut(s) 55
AvaII GGWCC 1 cut(s) 55
BaeGI GKGCMC 2 cut(s) 345, 422
BamHI GGATCC 1 cut(s) 31
BbsI GAAGAC 1 cut(s) 117
Bbv12I GWGCWC 1 cut(s) 345
BbvI GCAGC 3 cut(s) 91, 454, 496
BciT130I CCWGG 2 cut(s) 53, 281
BciVI GTATCC 1 cut(s) 299
BcoDI GTCTC 1 cut(s) 126
BfmI CTRYAG 1 cut(s) 411
BfuI GTATCC 1 cut(s) 299
BisI GCNGC 3 cut(s) 105, 468, 510
BlsI GCNGC 3 cut(s) 106, 469, 511
Bme1390I CCNGG 2 cut(s) 53, 281
Bme18I GGWCC 1 cut(s) 55
BmeRI GACNNNNNGTC 1 cut(s) 118
BmgBI CACGTC 1 cut(s) 362
BmgT120I GGNCC 1 cut(s) 55
BmiI GGNNCC 2 cut(s) 33, 57
BmrFI CCNGG 2 cut(s) 53, 281
BoxI GACNNNNGTC 1 cut(s) 8
BpiI GAAGAC 1 cut(s) 117
BsaJI CCNNGG 1 cut(s) 27
Bsc4I CCNNNNNNNGG 3 cut(s) 52, 64, 280
Bse1I ACTGG 2 cut(s) 263, 410
BseBI CCWGG 2 cut(s) 53, 281
BseDI CCNNGG 1 cut(s) 27
BseLI CCNNNNNNNGG 3 cut(s) 52, 64, 280
BseMII CTCAG 1 cut(s) 344
BseNI ACTGG 2 cut(s) 263, 410
BseRI GAGGAG 3 cut(s) 152, 155, 158
BseSI GKGCMC 2 cut(s) 345, 422
BseXI GCAGC 3 cut(s) 91, 454, 496
Bsh1285I CGRYCG 1 cut(s) 482
BsiEI CGRYCG 1 cut(s) 482
BsiHKAI GWGCWC 1 cut(s) 345
BsiSI CCGG 1 cut(s) 62
BsiWI CGTACG 1 cut(s) 397
BslFI GGGAC 2 cut(s) 41, 372
BslI CCNNNNNNNGG 3 cut(s) 52, 64, 280
BsmAI GTCTC 1 cut(s) 126
BsmFI GGGAC 2 cut(s) 41, 372
BsmI GAATGC 1 cut(s) 275
Bsp1286I GDGCHC 2 cut(s) 345, 422
Bsp143I GATC 2 cut(s) 31, 78
BspACI CCGC 2 cut(s) 59, 68
BspCNI CTCAG 1 cut(s) 345
BspLI GGNNCC 2 cut(s) 33, 57
BspMAI CTGCAG 1 cut(s) 415
BspPI GGATC 3 cut(s) 26, 39, 73
BsrI ACTGG 2 cut(s) 263, 410
BssECI CCNNGG 1 cut(s) 27
BssMI GATC 2 cut(s) 31, 78
BssT1I CCWWGG 1 cut(s) 27
Bst2UI CCWGG 2 cut(s) 53, 281
Bst4CI ACNGT 1 cut(s) 347
Bst6I CTCTTC 2 cut(s) 144, 150
BstDEI CTNAG 1 cut(s) 353
BstKTI GATC 2 cut(s) 34, 81
BstMAI GTCTC 1 cut(s) 126
BstMBI GATC 2 cut(s) 31, 78
BstMCI CGRYCG 1 cut(s) 482
BstNI CCWGG 2 cut(s) 53, 281
BstPAI GACNNNNGTC 1 cut(s) 8
BstSCI CCNGG 2 cut(s) 51, 279
BstSFI CTRYAG 1 cut(s) 411
BstSLI GKGCMC 2 cut(s) 345, 422
BstV1I GCAGC 3 cut(s) 91, 454, 496
BstV2I GAAGAC 1 cut(s) 117
BstX2I RGATCY 2 cut(s) 31, 78
BstXI CCANNNNNNTGG 1 cut(s) 89
BstYI RGATCY 2 cut(s) 31, 78
BsuI GTATCC 1 cut(s) 299
BtrI CACGTC 1 cut(s) 362
BtsIMutI CAGTG 3 cut(s) 256, 343, 403
Cfr13I GGNCC 1 cut(s) 55
CsiI ACCWGGT 2 cut(s) 51, 279
Csp6I GTAC 1 cut(s) 398
CspCI CAANNNNNGTGG 2 cut(s) 361, 396
CviAII CATG 1 cut(s) 89
CviJI RGCY 3 cut(s) 104, 491, 509
CviKI_1 RGCY 3 cut(s) 104, 491, 509
CviQI GTAC 1 cut(s) 398
DdeI CTNAG 1 cut(s) 353
DpnI GATC 2 cut(s) 33, 80
DpnII GATC 2 cut(s) 31, 78
DriI GACNNNNNGTC 1 cut(s) 118
Eam1104I CTCTTC 2 cut(s) 144, 150
Eam1105I GACNNNNNGTC 1 cut(s) 118
EarI CTCTTC 2 cut(s) 144, 150
EciI GGCGGA 1 cut(s) 83
Eco130I CCWWGG 1 cut(s) 27
Eco47I GGWCC 1 cut(s) 55
Eco57I CTGAAG 1 cut(s) 129
EcoO109I RGGNCCY 1 cut(s) 55
EcoRI GAATTC 1 cut(s) 20
EcoRII CCWGG 2 cut(s) 51, 279
EcoT14I CCWWGG 1 cut(s) 27
ErhI CCWWGG 1 cut(s) 27
FaeI CATG 1 cut(s) 92
FaiI YATR 4 cut(s) 90, 277, 330, 332
FalI AAGNNNNNCTT 2 cut(s) 297, 329
FaqI GGGAC 2 cut(s) 41, 372
FatI CATG 1 cut(s) 88
FauI CCCGC 1 cut(s) 66
Fnu4HI GCNGC 3 cut(s) 105, 468, 510
Fsp4HI GCNGC 3 cut(s) 105, 468, 510
GluI GCNGC 3 cut(s) 105, 468, 510
HapII CCGG 1 cut(s) 62
Hin1II CATG 1 cut(s) 92
HinfI GANTC 5 cut(s) 4, 14, 85, 113, 451
HpaII CCGG 1 cut(s) 62
Hpy166II GTNNAC 1 cut(s) 343
Hpy188I TCNGA 3 cut(s) 19, 36, 354
Hpy188III TCNNGA 1 cut(s) 82
Hpy8I GTNNAC 1 cut(s) 343
HpyAV CCTTC 1 cut(s) 238
HpyCH4III ACNGT 1 cut(s) 347
HpyCH4IV ACGT 1 cut(s) 361
HpyCH4V TGCA 2 cut(s) 343, 413
HpyF3I CTNAG 1 cut(s) 353
HpySE526I ACGT 1 cut(s) 361
Hsp92II CATG 1 cut(s) 92
Kzo9I GATC 2 cut(s) 31, 78
LpnPI CCDG 8 cut(s) 38, 65, 75, 95, 244, 266, 293, 391
Lsp1109I GCAGC 3 cut(s) 91, 454, 496
MabI ACCWGGT 2 cut(s) 51, 279
MaeII ACGT 1 cut(s) 361
MaeIII GTNAC 1 cut(s) 307
MalI GATC 2 cut(s) 33, 80
MboI GATC 2 cut(s) 31, 78
MflI RGATCY 2 cut(s) 31, 78
MhlI GDGCHC 2 cut(s) 345, 422
MluCI AATT 2 cut(s) 20, 218
MlyI GAGTC 3 cut(s) 79, 107, 460
MmeI TCCRAC 1 cut(s) 438
MnlI CCTC 9 cut(s) 58, 130, 133, 136, 139, 145, 151, 348, 385
MspI CCGG 1 cut(s) 62
MspR9I CCNGG 2 cut(s) 53, 281
Mva1269I GAATGC 1 cut(s) 275
MvaI CCWGG 2 cut(s) 53, 281
NdeII GATC 2 cut(s) 31, 78
NlaIII CATG 1 cut(s) 92
NlaIV GGNNCC 2 cut(s) 33, 57
PctI GAATGC 1 cut(s) 275
PfeI GAWTC 1 cut(s) 14
Pfl23II CGTACG 1 cut(s) 397
PkrI GCNGC 3 cut(s) 106, 469, 511
PleI GAGTC 3 cut(s) 79, 107, 459
PpsI GAGTC 3 cut(s) 79, 107, 459
PpuMI RGGWCCY 1 cut(s) 55
PshAI GACNNNNGTC 1 cut(s) 8
Psp5II RGGWCCY 1 cut(s) 55
Psp6I CCWGG 2 cut(s) 51, 279
PspGI CCWGG 2 cut(s) 51, 279
PspLI CGTACG 1 cut(s) 397
PspN4I GGNNCC 2 cut(s) 33, 57
PspPI GGNCC 1 cut(s) 55
PspPPI RGGWCCY 1 cut(s) 55
PstI CTGCAG 1 cut(s) 415
PsuI RGATCY 2 cut(s) 31, 78
RsaI GTAC 1 cut(s) 399
RsaNI GTAC 1 cut(s) 398
SatI GCNGC 3 cut(s) 105, 468, 510
Sau3AI GATC 2 cut(s) 31, 78
Sau96I GGNCC 1 cut(s) 55
SchI GAGTC 3 cut(s) 79, 107, 460
ScrFI CCNGG 2 cut(s) 53, 281
SduI GDGCHC 2 cut(s) 345, 422
SetI ASST 7 cut(s) 57, 106, 282, 325, 364, 378, 511
SexAI ACCWGGT 2 cut(s) 51, 279
SfcI CTRYAG 1 cut(s) 411
SinI GGWCC 1 cut(s) 55
Sse9I AATT 2 cut(s) 20, 218
SsiI CCGC 2 cut(s) 59, 68
StyD4I CCNGG 2 cut(s) 51, 279
StyI CCWWGG 1 cut(s) 27
TaaI ACNGT 1 cut(s) 347
TaiI ACGT 1 cut(s) 364
TaqI TCGA 1 cut(s) 12
TaqII GACCGA 1 cut(s) 468
TasI AATT 2 cut(s) 20, 218
TfiI GAWTC 1 cut(s) 14
TscAI CASTG 3 cut(s) 263, 350, 410
TseI GCWGC 3 cut(s) 104, 467, 509
TspDTI ATGAA 2 cut(s) 201, 282
TspRI CASTG 3 cut(s) 263, 350, 410
VneI GTGCAC 1 cut(s) 341
VpaK11BI GGWCC 1 cut(s) 55
XapI RAATTY 2 cut(s) 20, 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.