Prupe.4G159500_v2.0.a1

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0000181
Physical Location & Seq
Reverse (-)
9135718 .. 9137519
1802 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G159500.1

Sequence Viewer

Length: 681 bp
ATGCGAAGCCTGAACCCTAATAAATCCAAAGCTCTGCAGGCAGGCATTCCTCTCTTTCCAACAGACTCATCCATGGACCTTGTCTCATCCTTAGATTGCCAGAAATCGGATGCCCAGTTGGTGGGGCTCAACGAGGACCACGGTGGAAAGGACCTTTTCGCGCCAGATATCCCCCGTATCAGCGATTTGTCAATCTGTGGCAATTCGATTGTCGTCAATAAGAAAGGTGGCGGAAAGGTCCTTTGCCCACCAGAGATGGTACCTCTTGACTGCGATACGTCTCCACTTTTGAAAATTGACTGGCCTATCGGTAGCAAAGCTGAAGAAACAAAGGCTGGTCCTGATGGCACCTACATTCCTTTCTTCCAGCTTCCTCGTCCTGATATTGGTGAATGTGAGTATTGTTTAAAGGTGGGTGAGCACATTCCGCAACGATGCCCTTACAAGGATCGTGTCCCAAAGAATGCAATTCTTGGCAATGGTTGTGATGTAGTTTGTAGGGTATGTGGTTGGTTCTTTAGAGGGTCCTGTTGTGGCCAAGATGAAGGACGTGCGATTCTCAAGAATTGTGGTATCTGTTTGACCACAGGTAAACACTGGTCTGCATCATGCCCGACCCTTCCACCCGCCAGCAGGAAAGATATTCCTTCTGAACCATGTTTTTCTATCAACTTTGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

227

Amino Acids

24.43

Weight (kDa)

6.3

Isoelectric Point (pI)

39.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000181)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 259
AccB1I GGYRCC 2 cut(s) 259, 347
AccB7I CCANNNNNTGG 1 cut(s) 121
AccII CGCG 1 cut(s) 161
AciI CCGC 3 cut(s) 231, 428, 627
AclWI GGATC 1 cut(s) 456
AcoI YGGCCR 1 cut(s) 535
AcuI CTGAAG 1 cut(s) 342
AfaI GTAC 1 cut(s) 261
AfiI CCNNNNNNNGG 5 cut(s) 106, 121, 386, 445, 633
AgsI TTSAA 1 cut(s) 292
AjiI CACGTC 1 cut(s) 551
AluBI AGCT 3 cut(s) 32, 320, 370
AluI AGCT 3 cut(s) 32, 320, 370
Alw21I GWGCWC 1 cut(s) 423
Alw26I GTCTC 2 cut(s) 88, 285
AlwI GGATC 1 cut(s) 456
AoxI GGCC 2 cut(s) 302, 535
Asp718I GGTACC 1 cut(s) 259
AspLEI GCGC 1 cut(s) 163
AspS9I GGNCC 6 cut(s) 76, 136, 151, 238, 338, 525
AsuHPI GGTGA 2 cut(s) 401, 428
AvaII GGWCC 6 cut(s) 76, 136, 151, 238, 338, 525
BalI TGGCCA 1 cut(s) 537
BanI GGYRCC 2 cut(s) 259, 347
BanII GRGCYC 1 cut(s) 129
Bbv12I GWGCWC 1 cut(s) 423
BccI CCATC 2 cut(s) 250, 338
BcoDI GTCTC 2 cut(s) 88, 285
BfmI CTRYAG 1 cut(s) 35
Bme18I GGWCC 6 cut(s) 76, 136, 151, 238, 338, 525
BmgBI CACGTC 1 cut(s) 551
BmgT120I GGNCC 6 cut(s) 76, 136, 151, 238, 338, 525
BmiI GGNNCC 3 cut(s) 261, 349, 526
BmrI ACTGGG 1 cut(s) 109
BmsI GCATC 3 cut(s) 100, 425, 614
BmuI ACTGGG 1 cut(s) 109
BpuEI CTTGAG 1 cut(s) 545
BsaJI CCNNGG 2 cut(s) 72, 139
Bsc4I CCNNNNNNNGG 5 cut(s) 106, 121, 386, 445, 633
Bse1I ACTGG 3 cut(s) 115, 305, 602
Bse3DI GCAATG 1 cut(s) 484
BseDI CCNNGG 2 cut(s) 72, 139
BseGI GGATG 3 cut(s) 68, 86, 115
BseLI CCNNNNNNNGG 5 cut(s) 106, 121, 386, 445, 633
BseMI GCAATG 1 cut(s) 484
BseNI ACTGG 3 cut(s) 115, 305, 602
Bsh1236I CGCG 1 cut(s) 161
BshFI GGCC 2 cut(s) 304, 537
BshNI GGYRCC 2 cut(s) 259, 347
BsiHKAI GWGCWC 1 cut(s) 423
BslFI GGGAC 1 cut(s) 440
BslI CCNNNNNNNGG 5 cut(s) 106, 121, 386, 445, 633
BsmAI GTCTC 2 cut(s) 88, 285
BsmBI CGTCTC 1 cut(s) 285
BsmFI GGGAC 1 cut(s) 440
BsmI GAATGC 2 cut(s) 45, 469
BsnI GGCC 2 cut(s) 304, 537
Bsp1286I GDGCHC 2 cut(s) 129, 423
Bsp143I GATC 1 cut(s) 448
Bsp19I CCATGG 1 cut(s) 72
BspACI CCGC 3 cut(s) 231, 428, 627
BspANI GGCC 2 cut(s) 304, 537
BspFNI CGCG 1 cut(s) 161
BspLI GGNNCC 3 cut(s) 261, 349, 526
BspMAI CTGCAG 1 cut(s) 39
BspPI GGATC 1 cut(s) 456
BspT107I GGYRCC 2 cut(s) 259, 347
BsrDI GCAATG 1 cut(s) 484
BsrI ACTGG 3 cut(s) 115, 305, 602
BssECI CCNNGG 2 cut(s) 72, 139
BssMI GATC 1 cut(s) 448
BssT1I CCWWGG 1 cut(s) 72
Bst4CI ACNGT 1 cut(s) 143
BstC8I GCNNGC 3 cut(s) 39, 43, 631
BstDEI CTNAG 1 cut(s) 91
BstDSI CCRYGG 2 cut(s) 72, 139
BstF5I GGATG 3 cut(s) 68, 86, 115
BstFNI CGCG 1 cut(s) 161
BstHHI GCGC 1 cut(s) 163
BstKTI GATC 1 cut(s) 451
BstMAI GTCTC 2 cut(s) 88, 285
BstMBI GATC 1 cut(s) 448
BstMWI GCNNNNNNNGC 2 cut(s) 38, 427
BstSFI CTRYAG 1 cut(s) 35
BstUI CGCG 1 cut(s) 161
BsuRI GGCC 2 cut(s) 304, 537
BtgI CCRYGG 2 cut(s) 72, 139
BtrI CACGTC 1 cut(s) 551
BtsCI GGATG 3 cut(s) 68, 86, 115
BtsIMutI CAGTG 1 cut(s) 595
Cac8I GCNNGC 3 cut(s) 39, 43, 631
CfoI GCGC 1 cut(s) 163
Cfr13I GGNCC 6 cut(s) 76, 136, 151, 238, 338, 525
Csp6I GTAC 1 cut(s) 260
CspCI CAANNNNNGTGG 2 cut(s) 550, 585
CviAII CATG 3 cut(s) 73, 609, 657
CviJI RGCY 8 cut(s) 9, 32, 127, 304, 320, 335, 370, 537
CviKI_1 RGCY 8 cut(s) 9, 32, 127, 304, 320, 335, 370, 537
CviQI GTAC 1 cut(s) 260
DdeI CTNAG 1 cut(s) 91
DpnI GATC 1 cut(s) 450
DpnII GATC 1 cut(s) 448
DraI TTTAAA 1 cut(s) 408
EaeI YGGCCR 1 cut(s) 535
EciI GGCGGA 1 cut(s) 246
Eco130I CCWWGG 1 cut(s) 72
Eco24I GRGCYC 1 cut(s) 129
Eco32I GATATC 1 cut(s) 169
Eco47I GGWCC 6 cut(s) 76, 136, 151, 238, 338, 525
Eco57I CTGAAG 1 cut(s) 342
EcoO109I RGGNCCY 3 cut(s) 151, 238, 525
EcoRV GATATC 1 cut(s) 169
EcoT14I CCWWGG 1 cut(s) 72
EcoT38I GRGCYC 1 cut(s) 129
ErhI CCWWGG 1 cut(s) 72
Esp3I CGTCTC 1 cut(s) 285
FaeI CATG 3 cut(s) 76, 612, 660
FaiI YATR 4 cut(s) 74, 505, 610, 658
FaqI GGGAC 1 cut(s) 440
FatI CATG 3 cut(s) 72, 608, 656
FauI CCCGC 1 cut(s) 634
FokI GGATG 3 cut(s) 55, 73, 122
FriOI GRGCYC 1 cut(s) 129
GlaI GCGC 1 cut(s) 162
HaeIII GGCC 2 cut(s) 304, 537
HhaI GCGC 1 cut(s) 163
Hin1II CATG 3 cut(s) 76, 612, 660
Hin6I GCGC 1 cut(s) 161
HinP1I GCGC 1 cut(s) 161
HinfI GANTC 2 cut(s) 65, 556
HphI GGTGA 2 cut(s) 401, 428
Hpy166II GTNNAC 1 cut(s) 593
Hpy188I TCNGA 3 cut(s) 109, 652, 680
Hpy188III TCNNGA 4 cut(s) 266, 341, 380, 562
Hpy8I GTNNAC 1 cut(s) 593
HpyAV CCTTC 3 cut(s) 539, 629, 657
HpyCH4III ACNGT 1 cut(s) 143
HpyCH4IV ACGT 2 cut(s) 278, 550
HpyCH4V TGCA 3 cut(s) 37, 467, 605
HpyF10VI GCNNNNNNNGC 2 cut(s) 38, 427
HpyF3I CTNAG 1 cut(s) 91
HpySE526I ACGT 2 cut(s) 278, 550
Hsp92II CATG 3 cut(s) 76, 612, 660
HspAI GCGC 1 cut(s) 161
KpnI GGTACC 1 cut(s) 263
Kzo9I GATC 1 cut(s) 448
LweI GCATC 3 cut(s) 100, 425, 614
MaeII ACGT 2 cut(s) 278, 550
MalI GATC 1 cut(s) 450
MboI GATC 1 cut(s) 448
MboII GAAGA 2 cut(s) 335, 355
MhlI GDGCHC 2 cut(s) 129, 423
MlsI TGGCCA 1 cut(s) 537
MluCI AATT 4 cut(s) 202, 294, 468, 565
MluNI TGGCCA 1 cut(s) 537
MlyI GAGTC 1 cut(s) 59
MmeI TCCRAC 1 cut(s) 83
MnlI CCTC 5 cut(s) 60, 127, 273, 384, 515
Mox20I TGGCCA 1 cut(s) 537
MscI TGGCCA 1 cut(s) 537
MseI TTAA 1 cut(s) 407
Msp20I TGGCCA 1 cut(s) 537
Mva1269I GAATGC 2 cut(s) 45, 469
MvnI CGCG 1 cut(s) 161
MwoI GCNNNNNNNGC 2 cut(s) 38, 427
NcoI CCATGG 1 cut(s) 72
NdeII GATC 1 cut(s) 448
NlaIII CATG 3 cut(s) 76, 612, 660
NlaIV GGNNCC 3 cut(s) 261, 349, 526
PctI GAATGC 2 cut(s) 45, 469
PfeI GAWTC 1 cut(s) 556
PflFI GACNNNGTC 1 cut(s) 80
PflMI CCANNNNNTGG 1 cut(s) 121
PleI GAGTC 1 cut(s) 59
PpsI GAGTC 1 cut(s) 59
PpuMI RGGWCCY 3 cut(s) 151, 238, 525
Psp5II RGGWCCY 3 cut(s) 151, 238, 525
PspN4I GGNNCC 3 cut(s) 261, 349, 526
PspPI GGNCC 6 cut(s) 76, 136, 151, 238, 338, 525
PspPPI RGGWCCY 3 cut(s) 151, 238, 525
PstI CTGCAG 1 cut(s) 39
PsyI GACNNNGTC 1 cut(s) 80
RsaI GTAC 1 cut(s) 261
RsaNI GTAC 1 cut(s) 260
SaqAI TTAA 1 cut(s) 407
Sau3AI GATC 1 cut(s) 448
Sau96I GGNCC 6 cut(s) 76, 136, 151, 238, 338, 525
SchI GAGTC 1 cut(s) 59
SduI GDGCHC 2 cut(s) 129, 423
SfaNI GCATC 3 cut(s) 100, 425, 614
SfcI CTRYAG 1 cut(s) 35
SinI GGWCC 6 cut(s) 76, 136, 151, 238, 338, 525
SmlI CTYRAG 1 cut(s) 560
SmoI CTYRAG 1 cut(s) 560
Sse9I AATT 4 cut(s) 202, 294, 468, 565
SsiI CCGC 3 cut(s) 231, 428, 627
StyI CCWWGG 1 cut(s) 72
TaaI ACNGT 1 cut(s) 143
TaiI ACGT 2 cut(s) 281, 553
TaqI TCGA 1 cut(s) 206
TasI AATT 4 cut(s) 202, 294, 468, 565
TfiI GAWTC 1 cut(s) 556
Tru1I TTAA 1 cut(s) 407
Tru9I TTAA 1 cut(s) 407
TscAI CASTG 1 cut(s) 602
TspDTI ATGAA 1 cut(s) 558
TspRI CASTG 1 cut(s) 602
Tth111I GACNNNGTC 1 cut(s) 80
Van91I CCANNNNNTGG 1 cut(s) 121
VpaK11BI GGWCC 6 cut(s) 76, 136, 151, 238, 338, 525
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.