Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0000181

Physical Location & Seq

Genomic Coordinates Reverse (-)

56218953 .. 56219291

Gene Structure 339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG429700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGAATCAGTATGAACCTGCACCACCTGGTGAGGAAGACTGGCTTCCGTTCAAGTTTTATTTCCTTAAACATACCTGCTACTGGTATGATCATCCAATGGACTGTACTTGTGTAGACGCCACTTCAGATACTTCATTTGGTTCAATCCTTTACTCTAGTAGAAACAACGGATCAGGTTACACACCAGCTATGATTCGCAACCTTTCGAGGATTGGTATTCCACAAGAGGAGCAACCAACTATCCTCGACAAACTATTTGGAGTGCTTCAGACGGCCTTCCCTGAGGGCCGCATTCTTATCTTGATAGCTCAAGTGACTGCGTTTGTTGGGCAGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000209 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010154 GO:0010498 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0022412 GO:0022414 GO:0030154 GO:0030163 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0036211 GO:0040007 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0051603 GO:0060560 GO:0061458 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zf-rbx1

Protein Analysis

112

Amino Acids

12.72

Weight (kDa)

4.74

Isoelectric Point (pI)

46.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000181)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica	MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica	Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis	pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis	RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata	RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora	Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa	Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha	Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana	Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	25, 83
AccI	GTMKAC	1 cut(s)	114
AciI	CCGC	1 cut(s)	289
AclWI	GGATC	1 cut(s)	178
AcuI	CTGAAG	2 cut(s)	108, 251
AcyI	GRCGYC	1 cut(s)	117
AdeI	CACNNNGTG	1 cut(s)	29
AfaI	GTAC	1 cut(s)	106
AfiI	CCNNNNNNNGG	1 cut(s)	81
AgsI	TTSAA	2 cut(s)	52, 144
AjnI	CCWGG	1 cut(s)	25
AluBI	AGCT	2 cut(s)	188, 308
AluI	AGCT	2 cut(s)	188, 308
AlwI	GGATC	1 cut(s)	178
AoxI	GGCC	2 cut(s)	273, 286
ArsI	GACNNNNNNTTYG	2 cut(s)	239, 271
AspS9I	GGNCC	1 cut(s)	286
AsuHPI	GGTGA	1 cut(s)	41
AxyI	CCTNAGG	1 cut(s)	282
BbsI	GAAGAC	1 cut(s)	42
BceAI	ACGGC	1 cut(s)	288
BciT130I	CCWGG	1 cut(s)	27
BclI	TGATCA	1 cut(s)	88
BfaI	CTAG	1 cut(s)	156
BfuAI	ACCTGC	2 cut(s)	25, 83
BisI	GCNGC	1 cut(s)	289
BlsI	GCNGC	1 cut(s)	290
Bme1390I	CCNGG	1 cut(s)	27
BmgT120I	GGNCC	1 cut(s)	286
BmrFI	CCNGG	1 cut(s)	27
BpiI	GAAGAC	1 cut(s)	42
BpuEI	CTTGAG	1 cut(s)	294
BsaHI	GRCGYC	1 cut(s)	117
Bsc4I	CCNNNNNNNGG	1 cut(s)	81
Bse1I	ACTGG	2 cut(s)	44, 86
Bse21I	CCTNAGG	1 cut(s)	282
BseBI	CCWGG	1 cut(s)	27
BseGI	GGATG	1 cut(s)	91
BseLI	CCNNNNNNNGG	1 cut(s)	81
BseMII	CTCAG	1 cut(s)	273
BseNI	ACTGG	2 cut(s)	44, 86
BseRI	GAGGAG	1 cut(s)	242
BshFI	GGCC	2 cut(s)	275, 288
BslI	CCNNNNNNNGG	1 cut(s)	81
BsmI	GAATGC	1 cut(s)	291
BsnI	GGCC	2 cut(s)	275, 288
Bsp143I	GATC	2 cut(s)	88, 170
BspACI	CCGC	1 cut(s)	289
BspANI	GGCC	2 cut(s)	275, 288
BspCNI	CTCAG	1 cut(s)	274
BspMI	ACCTGC	2 cut(s)	25, 83
BspPI	GGATC	1 cut(s)	178
BsrI	ACTGG	2 cut(s)	44, 86
BssMI	GATC	2 cut(s)	88, 170
BssNI	GRCGYC	1 cut(s)	117
Bst2UI	CCWGG	1 cut(s)	27
Bst4CI	ACNGT	1 cut(s)	104
BstACI	GRCGYC	1 cut(s)	117
BstDEI	CTNAG	1 cut(s)	282
BstF5I	GGATG	1 cut(s)	91
BstKTI	GATC	2 cut(s)	91, 173
BstMBI	GATC	2 cut(s)	88, 170
BstNI	CCWGG	1 cut(s)	27
BstSCI	CCNGG	1 cut(s)	25
BstV2I	GAAGAC	1 cut(s)	42
Bsu36I	CCTNAGG	1 cut(s)	282
BsuRI	GGCC	2 cut(s)	275, 288
BtsCI	GGATG	1 cut(s)	91
BveI	ACCTGC	2 cut(s)	25, 83
Cfr13I	GGNCC	1 cut(s)	286
CseI	GACGC	1 cut(s)	125
CsiI	ACCWGGT	1 cut(s)	25
Csp6I	GTAC	1 cut(s)	105
CviJI	RGCY	5 cut(s)	43, 188, 275, 288, 308
CviKI_1	RGCY	5 cut(s)	43, 188, 275, 288, 308
CviQI	GTAC	1 cut(s)	105
DdeI	CTNAG	1 cut(s)	282
DpnI	GATC	2 cut(s)	90, 172
DpnII	GATC	2 cut(s)	88, 170
DraIII	CACNNNGTG	1 cut(s)	29
Eco57I	CTGAAG	2 cut(s)	108, 251
Eco81I	CCTNAGG	1 cut(s)	282
EcoRII	CCWGG	1 cut(s)	25
FaiI	YATR	4 cut(s)	12, 72, 87, 191
FalI	AAGNNNNNCTT	2 cut(s)	27, 59
FbaI	TGATCA	1 cut(s)	88
FblI	GTMKAC	1 cut(s)	114
Fnu4HI	GCNGC	1 cut(s)	289
FokI	GGATG	1 cut(s)	78
Fsp4HI	GCNGC	1 cut(s)	289
FspBI	CTAG	1 cut(s)	156
GluI	GCNGC	1 cut(s)	289
HaeIII	GGCC	2 cut(s)	275, 288
HgaI	GACGC	1 cut(s)	125
Hin1I	GRCGYC	1 cut(s)	117
HinfI	GANTC	2 cut(s)	4, 193
HphI	GGTGA	1 cut(s)	41
Hpy166II	GTNNAC	1 cut(s)	115
Hpy188I	TCNGA	2 cut(s)	127, 270
Hpy188III	TCNNGA	1 cut(s)	301
Hpy8I	GTNNAC	1 cut(s)	115
HpyAV	CCTTC	1 cut(s)	286
HpyCH4III	ACNGT	1 cut(s)	104
HpyCH4V	TGCA	1 cut(s)	20
HpyF3I	CTNAG	1 cut(s)	282
Hsp92I	GRCGYC	1 cut(s)	117
Ksp22I	TGATCA	1 cut(s)	88
Kzo9I	GATC	2 cut(s)	88, 170
LmnI	GCTCC	1 cut(s)	229
LpnPI	CCDG	9 cut(s)	12, 25, 30, 39, 67, 88, 159, 198, 294
MabI	ACCWGGT	1 cut(s)	25
MaeI	CTAG	1 cut(s)	156
MaeIII	GTNAC	2 cut(s)	176, 313
MalI	GATC	2 cut(s)	90, 172
MboI	GATC	2 cut(s)	88, 170
MboII	GAAGA	1 cut(s)	47
MnlI	CCTC	5 cut(s)	25, 201, 220, 254, 277
MseI	TTAA	1 cut(s)	66
MspR9I	CCNGG	1 cut(s)	27
Mva1269I	GAATGC	1 cut(s)	291
MvaI	CCWGG	1 cut(s)	27
NdeII	GATC	2 cut(s)	88, 170
NmuCI	GTSAC	1 cut(s)	313
PctI	GAATGC	1 cut(s)	291
PfeI	GAWTC	2 cut(s)	4, 193
PkrI	GCNGC	1 cut(s)	290
Psp6I	CCWGG	1 cut(s)	25
PspGI	CCWGG	1 cut(s)	25
PspPI	GGNCC	1 cut(s)	286
RsaI	GTAC	1 cut(s)	106
RsaNI	GTAC	1 cut(s)	105
SaqAI	TTAA	1 cut(s)	66
SatI	GCNGC	1 cut(s)	289
Sau3AI	GATC	2 cut(s)	88, 170
Sau96I	GGNCC	1 cut(s)	286
ScrFI	CCNGG	1 cut(s)	27
SetI	ASST	7 cut(s)	19, 28, 77, 178, 190, 204, 310
SexAI	ACCWGGT	1 cut(s)	25
SmlI	CTYRAG	1 cut(s)	309
SmoI	CTYRAG	1 cut(s)	309
SsiI	CCGC	1 cut(s)	289
SspMI	CTAG	1 cut(s)	156
StyD4I	CCNGG	1 cut(s)	25
TaaI	ACNGT	1 cut(s)	104
TaqI	TCGA	2 cut(s)	206, 246
TatI	WGTACW	1 cut(s)	104
TauI	GCSGC	1 cut(s)	291
TfiI	GAWTC	2 cut(s)	4, 193
Tru1I	TTAA	1 cut(s)	66
Tru9I	TTAA	1 cut(s)	66
TseFI	GTSAC	1 cut(s)	313
Tsp45I	GTSAC	1 cut(s)	313
TspDTI	ATGAA	3 cut(s)	17, 27, 123
TspGWI	ACGGA	2 cut(s)	36, 183
XmiI	GTMKAC	1 cut(s)	114
XspI	CTAG	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.