FvH4_6g08071

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000181
Physical Location & Seq
Reverse (-)
4799055 .. 4800025
971 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g08071.t1

Sequence Viewer

Length: 498 bp
ATGGAGGTGTTGAGGTCATCGGAATTCCTCGAAAGCCTGGACCTGTCCGTCGTCCCCAATCCTGTTGAGCGTCCTCCTCGCGCTTCTACAATCATCCCCCGTGAATGTGGTCCTGATCTTTCGGAATTTATTTTTCCTCCTCAGGAACCATGTCTCATAGATTATGTGTCACTTTTTTGCGATGGTTCACCCATTAATGGCGCAATTCCTGGTACATGTATAATTTGTTCCTTGGTTGATGAACATGGTGAATTCGAATGCCCGTACCAGAGTTTTATCCCAAAGAATGCAACTGTTAGCAGCTGTGACATAGTCTGTAAGGTTTGTGATCAGTTGTTTTCAGGGCGATGCAGTAATCAAGATGGTGGACGTGCTAAAATCAGGTTATGTCATAATTGCATGATGTTTGGTGACCACTGGGCATCTCAGTGCCCCAAGGAGGACAGGGCTGTTGGAATTGTCGACGGTCTGTATTTCTCTGACGAAATCAGCAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

166

Amino Acids

18.16

Weight (kDa)

4.48

Isoelectric Point (pI)

47.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000181)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 47
AccI GTMKAC 1 cut(s) 462
AccII CGCG 1 cut(s) 81
AcsI RAATTY 3 cut(s) 23, 125, 251
AfaI GTAC 2 cut(s) 214, 266
AfiI CCNNNNNNNGG 2 cut(s) 197, 439
AflIII ACRYGT 1 cut(s) 215
AjiI CACGTC 1 cut(s) 371
AjnI CCWGG 2 cut(s) 36, 208
AluBI AGCT 1 cut(s) 303
AluI AGCT 1 cut(s) 303
Alw26I GTCTC 1 cut(s) 158
ApeKI GCWGC 1 cut(s) 300
ApoI RAATTY 3 cut(s) 23, 125, 251
AseI ATTAAT 1 cut(s) 195
AspLEI GCGC 2 cut(s) 83, 203
AspS9I GGNCC 2 cut(s) 40, 110
AsuHPI GGTGA 3 cut(s) 180, 260, 422
AsuII TTCGAA 1 cut(s) 255
AvaII GGWCC 2 cut(s) 40, 110
AxyI CCTNAGG 1 cut(s) 141
BaeGI GKGCMC 1 cut(s) 434
BbvI GCAGC 1 cut(s) 312
BccI CCATC 2 cut(s) 176, 356
BciT130I CCWGG 2 cut(s) 38, 210
BclI TGATCA 1 cut(s) 328
BcoDI GTCTC 1 cut(s) 158
BisI GCNGC 1 cut(s) 301
BlsI GCNGC 1 cut(s) 302
Bme1390I CCNGG 2 cut(s) 38, 210
Bme18I GGWCC 2 cut(s) 40, 110
BmgBI CACGTC 1 cut(s) 371
BmgT120I GGNCC 2 cut(s) 40, 110
BmiI GGNNCC 1 cut(s) 147
BmrFI CCNGG 2 cut(s) 38, 210
BmrI ACTGGG 1 cut(s) 427
BmsI GCATC 2 cut(s) 338, 431
BmuI ACTGGG 1 cut(s) 427
Bpu14I TTCGAA 1 cut(s) 255
BsaJI CCNNGG 2 cut(s) 231, 435
Bsc4I CCNNNNNNNGG 2 cut(s) 197, 439
Bse1I ACTGG 1 cut(s) 422
Bse21I CCTNAGG 1 cut(s) 141
BseBI CCWGG 2 cut(s) 38, 210
BseDI CCNNGG 2 cut(s) 231, 435
BseGI GGATG 1 cut(s) 93
BseLI CCNNNNNNNGG 2 cut(s) 197, 439
BseMII CTCAG 2 cut(s) 155, 440
BseNI ACTGG 1 cut(s) 422
BseRI GAGGAG 2 cut(s) 66, 129
BseSI GKGCMC 1 cut(s) 434
BseXI GCAGC 1 cut(s) 312
Bsh1236I CGCG 1 cut(s) 81
BslFI GGGAC 1 cut(s) 38
BslI CCNNNNNNNGG 2 cut(s) 197, 439
BsmAI GTCTC 1 cut(s) 158
BsmFI GGGAC 1 cut(s) 38
BsmI GAATGC 2 cut(s) 263, 292
Bsp119I TTCGAA 1 cut(s) 255
Bsp1286I GDGCHC 1 cut(s) 434
Bsp143I GATC 2 cut(s) 115, 328
BspCNI CTCAG 2 cut(s) 154, 439
BspFNI CGCG 1 cut(s) 81
BspLI GGNNCC 1 cut(s) 147
BspT104I TTCGAA 1 cut(s) 255
BsrI ACTGG 1 cut(s) 422
BssECI CCNNGG 2 cut(s) 231, 435
BssMI GATC 2 cut(s) 115, 328
BssT1I CCWWGG 2 cut(s) 231, 435
Bst2UI CCWGG 2 cut(s) 38, 210
Bst4CI ACNGT 2 cut(s) 295, 467
BstBI TTCGAA 1 cut(s) 255
BstDEI CTNAG 2 cut(s) 141, 426
BstEII GGTNACC 1 cut(s) 410
BstF5I GGATG 1 cut(s) 93
BstFNI CGCG 1 cut(s) 81
BstHHI GCGC 2 cut(s) 83, 203
BstKTI GATC 2 cut(s) 118, 331
BstMAI GTCTC 1 cut(s) 158
BstMBI GATC 2 cut(s) 115, 328
BstNI CCWGG 2 cut(s) 38, 210
BstNSI RCATGY 1 cut(s) 219
BstPI GGTNACC 1 cut(s) 410
BstSCI CCNGG 2 cut(s) 36, 208
BstSLI GKGCMC 1 cut(s) 434
BstUI CGCG 1 cut(s) 81
BstV1I GCAGC 1 cut(s) 312
Bsu36I CCTNAGG 1 cut(s) 141
BtgZI GCGATG 2 cut(s) 195, 361
BtrI CACGTC 1 cut(s) 371
BtsCI GGATG 1 cut(s) 93
BtsIMutI CAGTG 2 cut(s) 415, 434
CfoI GCGC 2 cut(s) 83, 203
Cfr13I GGNCC 2 cut(s) 40, 110
CseI GACGC 1 cut(s) 59
Csp6I GTAC 2 cut(s) 213, 265
CviAII CATG 4 cut(s) 150, 216, 245, 400
CviJI RGCY 3 cut(s) 36, 303, 449
CviKI_1 RGCY 3 cut(s) 36, 303, 449
CviQI GTAC 2 cut(s) 213, 265
DdeI CTNAG 2 cut(s) 141, 426
DpnI GATC 2 cut(s) 117, 330
DpnII GATC 2 cut(s) 115, 328
DrdI GACNNNNNNGTC 1 cut(s) 47
DseDI GACNNNNNNGTC 1 cut(s) 47
Eco130I CCWWGG 2 cut(s) 231, 435
Eco47I GGWCC 2 cut(s) 40, 110
Eco81I CCTNAGG 1 cut(s) 141
Eco91I GGTNACC 1 cut(s) 410
EcoO65I GGTNACC 1 cut(s) 410
EcoRI GAATTC 2 cut(s) 23, 251
EcoRII CCWGG 2 cut(s) 36, 208
EcoT14I CCWWGG 2 cut(s) 231, 435
ErhI CCWWGG 2 cut(s) 231, 435
FaeI CATG 4 cut(s) 153, 219, 248, 403
FaqI GGGAC 1 cut(s) 38
FatI CATG 4 cut(s) 149, 215, 244, 399
FbaI TGATCA 1 cut(s) 328
FblI GTMKAC 1 cut(s) 462
Fnu4HI GCNGC 1 cut(s) 301
FokI GGATG 1 cut(s) 80
Fsp4HI GCNGC 1 cut(s) 301
GlaI GCGC 2 cut(s) 82, 202
GluI GCNGC 1 cut(s) 301
HgaI GACGC 1 cut(s) 59
HhaI GCGC 2 cut(s) 83, 203
Hin1II CATG 4 cut(s) 153, 219, 248, 403
Hin6I GCGC 2 cut(s) 81, 201
HinP1I GCGC 2 cut(s) 81, 201
HincII GTYRAC 1 cut(s) 463
HindII GTYRAC 1 cut(s) 463
HphI GGTGA 3 cut(s) 180, 260, 422
Hpy166II GTNNAC 3 cut(s) 188, 368, 463
Hpy188I TCNGA 3 cut(s) 22, 124, 481
Hpy188III TCNNGA 3 cut(s) 113, 143, 359
Hpy8I GTNNAC 3 cut(s) 188, 368, 463
Hpy99I CGWCG 2 cut(s) 53, 467
HpyCH4III ACNGT 2 cut(s) 295, 467
HpyCH4IV ACGT 1 cut(s) 370
HpyCH4V TGCA 3 cut(s) 290, 351, 399
HpyF3I CTNAG 2 cut(s) 141, 426
HpySE526I ACGT 1 cut(s) 370
Hsp92II CATG 4 cut(s) 153, 219, 248, 403
HspAI GCGC 2 cut(s) 81, 201
Ksp22I TGATCA 1 cut(s) 328
Kzo9I GATC 2 cut(s) 115, 328
Lsp1109I GCAGC 1 cut(s) 312
LweI GCATC 2 cut(s) 338, 431
MaeII ACGT 1 cut(s) 370
MaeIII GTNAC 3 cut(s) 168, 305, 410
MalI GATC 2 cut(s) 117, 330
MboI GATC 2 cut(s) 115, 328
MhlI GDGCHC 1 cut(s) 434
MluCI AATT 7 cut(s) 23, 125, 204, 222, 251, 394, 456
MmeI TCCRAC 1 cut(s) 433
MnlI CCTC 7 cut(s) 6, 38, 84, 87, 147, 150, 433
MseI TTAA 2 cut(s) 195, 496
MslI CAYNNNNRTG 1 cut(s) 427
MspA1I CMGCKG 1 cut(s) 303
MspR9I CCNGG 2 cut(s) 38, 210
Mva1269I GAATGC 2 cut(s) 263, 292
MvaI CCWGG 2 cut(s) 38, 210
MvnI CGCG 1 cut(s) 81
NdeII GATC 2 cut(s) 115, 328
NlaIII CATG 4 cut(s) 153, 219, 248, 403
NlaIV GGNNCC 1 cut(s) 147
NmuCI GTSAC 3 cut(s) 168, 305, 410
NspI RCATGY 1 cut(s) 219
NspV TTCGAA 1 cut(s) 255
PciI ACATGT 1 cut(s) 215
PctI GAATGC 2 cut(s) 263, 292
PflFI GACNNNGTC 1 cut(s) 311
PkrI GCNGC 1 cut(s) 302
PscI ACATGT 1 cut(s) 215
PshBI ATTAAT 1 cut(s) 195
Psp6I CCWGG 2 cut(s) 36, 208
PspEI GGTNACC 1 cut(s) 410
PspGI CCWGG 2 cut(s) 36, 208
PspN4I GGNNCC 1 cut(s) 147
PspPI GGNCC 2 cut(s) 40, 110
PsrI GAACNNNNNNTAC 2 cut(s) 211, 243
PsyI GACNNNGTC 1 cut(s) 311
PvuII CAGCTG 1 cut(s) 303
RsaI GTAC 2 cut(s) 214, 266
RsaNI GTAC 2 cut(s) 213, 265
RseI CAYNNNNRTG 1 cut(s) 427
SalI GTCGAC 1 cut(s) 461
SaqAI TTAA 2 cut(s) 195, 496
SatI GCNGC 1 cut(s) 301
Sau3AI GATC 2 cut(s) 115, 328
Sau96I GGNCC 2 cut(s) 40, 110
ScrFI CCNGG 2 cut(s) 38, 210
SduI GDGCHC 1 cut(s) 434
SetI ASST 7 cut(s) 9, 17, 45, 305, 324, 373, 386
SfaNI GCATC 2 cut(s) 338, 431
SfuI TTCGAA 1 cut(s) 255
SinI GGWCC 2 cut(s) 40, 110
SmiMI CAYNNNNRTG 1 cut(s) 427
Sse9I AATT 7 cut(s) 23, 125, 204, 222, 251, 394, 456
StyD4I CCNGG 2 cut(s) 36, 208
StyI CCWWGG 2 cut(s) 231, 435
TaaI ACNGT 2 cut(s) 295, 467
TaiI ACGT 1 cut(s) 373
TaqI TCGA 3 cut(s) 30, 255, 462
TasI AATT 7 cut(s) 23, 125, 204, 222, 251, 394, 456
Tru1I TTAA 2 cut(s) 195, 496
Tru9I TTAA 2 cut(s) 195, 496
TscAI CASTG 2 cut(s) 422, 434
TseFI GTSAC 3 cut(s) 168, 305, 410
TseI GCWGC 1 cut(s) 300
Tsp45I GTSAC 3 cut(s) 168, 305, 410
TspDTI ATGAA 1 cut(s) 255
TspGWI ACGGA 1 cut(s) 37
TspRI CASTG 2 cut(s) 422, 434
Tth111I GACNNNGTC 1 cut(s) 311
VpaK11BI GGWCC 2 cut(s) 40, 110
VspI ATTAAT 1 cut(s) 195
XapI RAATTY 3 cut(s) 23, 125, 251
XceI RCATGY 1 cut(s) 219
XmiI GTMKAC 1 cut(s) 462
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.