Prupe.1G019700_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000181
Physical Location & Seq
Forward (+)
1377783 .. 1380486
2704 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G019700.4

Sequence Viewer

Length: 705 bp
ATGGACGGCGGCCTTGTGTCTCCACTTTTGCAGATCCACCGGCCAAAGCCAATCAGTAGCAAGCCTCTGGAAGAACTTATTGGGAGCCAGGGTATTGAATCAAATATTGTTGAATCAAAGGCTGTTGAATCCGAGGTTGTTGAACTTATTGGGAGCCAGGGTATTGAATCAAATATTGTTGAATCAAAGGCTGTTGAATCCGAGGTTGTTGAACTTATTGGTAGCAATGCTGATGAATTTGAGGCTGATGAATCTGAGGATGATGAATTTGAGGCTGAAGATGAATTTGAGGCTGATGATGAATTTGAGGCTGATGAATTTGAGGATGATGAATTTGAGGCTGATGAATCGGAGACTGATGACTCGGAGACTGATGACTCGGATTCTGAAAAACTTATTGGTCGTGAATGTCAGTTTTGTTTAAAGGTGGGTGATCACTTCTCGCAAACATGCTCTTACAGGTATCATGTCCCAAAGAACGCAATTGTTGGCAAGAGCTGTGTGGTAGTTTGTAATTTGTGTGGTTGCCTCTTTAGAGACTCATGTTGTGGCGTTTGTGGCCAAAGCGATGGATGTGCAATTCTTATGAATTGTTTACATTGTGGGAAGATAGGTGAACATTTGATTTTTACGTGTCCGAGCCGCGAGGGGAAACCTTCTTGTTTTTCTTTGGACCCTTATACTGGTTCTGTTATTTCCATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

235

Amino Acids

25.51

Weight (kDa)

4.05

Isoelectric Point (pI)

48.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000181)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 645
AciI CCGC 2 cut(s) 9, 643
AclWI GGATC 1 cut(s) 28
AcoI YGGCCR 2 cut(s) 41, 559
AcsI RAATTY 6 cut(s) 236, 266, 284, 302, 317, 332
AcuI CTGAAG 1 cut(s) 297
AfiI CCNNNNNNNGG 1 cut(s) 683
AflIII ACRYGT 1 cut(s) 632
AgsI TTSAA 8 cut(s) 98, 113, 128, 143, 167, 182, 197, 212
AjnI CCWGG 2 cut(s) 87, 156
AjuI GAANNNNNNNTTGG 4 cut(s) 63, 95, 381, 413
AluBI AGCT 1 cut(s) 498
AluI AGCT 1 cut(s) 498
Alw26I GTCTC 4 cut(s) 24, 347, 362, 531
AlwI GGATC 1 cut(s) 28
AoxI GGCC 3 cut(s) 10, 41, 559
ApoI RAATTY 6 cut(s) 236, 266, 284, 302, 317, 332
AspS9I GGNCC 1 cut(s) 673
AsuHPI GGTGA 2 cut(s) 443, 626
AvaII GGWCC 1 cut(s) 673
BalI TGGCCA 1 cut(s) 561
BccI CCATC 1 cut(s) 563
BceAI ACGGC 1 cut(s) 22
BcgI CGANNNNNNTGC 2 cut(s) 557, 591
BciT130I CCWGG 2 cut(s) 89, 158
BclI TGATCA 1 cut(s) 433
BcoDI GTCTC 4 cut(s) 24, 347, 362, 531
BisI GCNGC 2 cut(s) 10, 643
BlsI GCNGC 2 cut(s) 11, 644
Bme1390I CCNGG 2 cut(s) 89, 158
Bme18I GGWCC 1 cut(s) 673
BmgT120I GGNCC 1 cut(s) 673
BmiI GGNNCC 3 cut(s) 86, 155, 675
BmrFI CCNGG 2 cut(s) 89, 158
BsaAI YACGTR 1 cut(s) 633
BsaJI CCNNGG 4 cut(s) 88, 132, 157, 201
BsaXI ACNNNNNCTCC 4 cut(s) 76, 106, 145, 175
Bsc4I CCNNNNNNNGG 1 cut(s) 683
Bse118I RCCGGY 1 cut(s) 39
Bse1I ACTGG 1 cut(s) 688
Bse3DI GCAATG 1 cut(s) 232
BseBI CCWGG 2 cut(s) 89, 158
BseDI CCNNGG 4 cut(s) 88, 132, 157, 201
BseGI GGATG 3 cut(s) 265, 331, 578
BseLI CCNNNNNNNGG 1 cut(s) 683
BseMI GCAATG 1 cut(s) 232
BseMII CTCAG 1 cut(s) 246
BseNI ACTGG 1 cut(s) 688
Bsh1236I CGCG 1 cut(s) 645
BshFI GGCC 3 cut(s) 12, 43, 561
BsiSI CCGG 1 cut(s) 40
BslFI GGGAC 1 cut(s) 455
BslI CCNNNNNNNGG 1 cut(s) 683
BsmAI GTCTC 4 cut(s) 24, 347, 362, 531
BsmFI GGGAC 1 cut(s) 455
BsnI GGCC 3 cut(s) 12, 43, 561
Bsp143I GATC 2 cut(s) 33, 433
BspACI CCGC 2 cut(s) 9, 643
BspANI GGCC 3 cut(s) 12, 43, 561
BspCNI CTCAG 1 cut(s) 247
BspFNI CGCG 1 cut(s) 645
BspLI GGNNCC 3 cut(s) 86, 155, 675
BspPI GGATC 1 cut(s) 28
BsrDI GCAATG 1 cut(s) 232
BsrFI RCCGGY 1 cut(s) 39
BsrI ACTGG 1 cut(s) 688
BssAI RCCGGY 1 cut(s) 39
BssECI CCNNGG 4 cut(s) 88, 132, 157, 201
BssMI GATC 2 cut(s) 33, 433
Bst2UI CCWGG 2 cut(s) 89, 158
BstBAI YACGTR 1 cut(s) 633
BstC8I GCNNGC 1 cut(s) 62
BstDEI CTNAG 1 cut(s) 255
BstF5I GGATG 3 cut(s) 265, 331, 578
BstFNI CGCG 1 cut(s) 645
BstKTI GATC 2 cut(s) 36, 436
BstMAI GTCTC 4 cut(s) 24, 347, 362, 531
BstMBI GATC 2 cut(s) 33, 433
BstMWI GCNNNNNNNGC 1 cut(s) 558
BstNI CCWGG 2 cut(s) 89, 158
BstNSI RCATGY 1 cut(s) 453
BstSCI CCNGG 2 cut(s) 87, 156
BstUI CGCG 1 cut(s) 645
BstX2I RGATCY 1 cut(s) 33
BstXI CCANNNNNNTGG 1 cut(s) 569
BstYI RGATCY 1 cut(s) 33
BsuRI GGCC 3 cut(s) 12, 43, 561
BtgZI GCGATG 1 cut(s) 582
BtsCI GGATG 3 cut(s) 265, 331, 578
Cac8I GCNNGC 1 cut(s) 62
Cfr10I RCCGGY 1 cut(s) 39
Cfr13I GGNCC 1 cut(s) 673
CviAII CATG 3 cut(s) 450, 467, 543
DdeI CTNAG 1 cut(s) 255
DpnI GATC 2 cut(s) 35, 435
DpnII GATC 2 cut(s) 33, 433
DraI TTTAAA 1 cut(s) 423
EaeI YGGCCR 2 cut(s) 41, 559
Eco47I GGWCC 1 cut(s) 673
Eco57I CTGAAG 1 cut(s) 297
EcoRII CCWGG 2 cut(s) 87, 156
FaeI CATG 3 cut(s) 453, 470, 546
FaiI YATR 5 cut(s) 451, 468, 544, 587, 681
FaqI GGGAC 1 cut(s) 455
FatI CATG 3 cut(s) 449, 466, 542
FbaI TGATCA 1 cut(s) 433
Fnu4HI GCNGC 2 cut(s) 10, 643
FokI GGATG 3 cut(s) 272, 338, 585
Fsp4HI GCNGC 2 cut(s) 10, 643
GluI GCNGC 2 cut(s) 10, 643
HaeIII GGCC 3 cut(s) 12, 43, 561
HapII CCGG 1 cut(s) 40
Hin1II CATG 3 cut(s) 453, 470, 546
HpaII CCGG 1 cut(s) 40
HphI GGTGA 2 cut(s) 443, 626
Hpy166II GTNNAC 2 cut(s) 596, 617
Hpy188I TCNGA 8 cut(s) 133, 202, 256, 352, 367, 382, 388, 639
Hpy188III TCNNGA 2 cut(s) 68, 404
Hpy8I GTNNAC 2 cut(s) 596, 617
HpyAV CCTTC 1 cut(s) 666
HpyCH4IV ACGT 1 cut(s) 632
HpyCH4V TGCA 2 cut(s) 31, 578
HpyF10VI GCNNNNNNNGC 1 cut(s) 558
HpyF3I CTNAG 1 cut(s) 255
HpySE526I ACGT 1 cut(s) 632
Hsp92II CATG 3 cut(s) 453, 470, 546
Ksp22I TGATCA 1 cut(s) 433
Kzo9I GATC 2 cut(s) 33, 433
LmnI GCTCC 2 cut(s) 84, 153
LpnPI CCDG 8 cut(s) 53, 53, 74, 101, 143, 170, 445, 669
MaeII ACGT 1 cut(s) 632
MalI GATC 2 cut(s) 35, 435
MboI GATC 2 cut(s) 33, 433
MboII GAAGA 3 cut(s) 83, 290, 619
MfeI CAATTG 1 cut(s) 483
MflI RGATCY 1 cut(s) 33
MlsI TGGCCA 1 cut(s) 561
MluNI TGGCCA 1 cut(s) 561
MlyI GAGTC 3 cut(s) 356, 371, 533
Mox20I TGGCCA 1 cut(s) 561
MscI TGGCCA 1 cut(s) 561
MseI TTAA 2 cut(s) 422, 703
Msp20I TGGCCA 1 cut(s) 561
MspI CCGG 1 cut(s) 40
MspR9I CCNGG 2 cut(s) 89, 158
MunI CAATTG 1 cut(s) 483
MvaI CCWGG 2 cut(s) 89, 158
MvnI CGCG 1 cut(s) 645
MwoI GCNNNNNNNGC 1 cut(s) 558
NdeII GATC 2 cut(s) 33, 433
NlaIII CATG 3 cut(s) 453, 470, 546
NlaIV GGNNCC 3 cut(s) 86, 155, 675
NspI RCATGY 1 cut(s) 453
PfeI GAWTC 9 cut(s) 98, 113, 128, 167, 182, 197, 251, 347, 383
PkrI GCNGC 2 cut(s) 11, 644
PleI GAGTC 3 cut(s) 356, 371, 533
PpsI GAGTC 3 cut(s) 356, 371, 533
Ppu21I YACGTR 1 cut(s) 633
Psp6I CCWGG 2 cut(s) 87, 156
PspGI CCWGG 2 cut(s) 87, 156
PspN4I GGNNCC 3 cut(s) 86, 155, 675
PspPI GGNCC 1 cut(s) 673
PsuI RGATCY 1 cut(s) 33
SaqAI TTAA 2 cut(s) 422, 703
SatI GCNGC 2 cut(s) 10, 643
Sau3AI GATC 2 cut(s) 33, 433
Sau96I GGNCC 1 cut(s) 673
SchI GAGTC 3 cut(s) 356, 371, 533
ScrFI CCNGG 2 cut(s) 89, 158
SetI ASST 8 cut(s) 138, 207, 429, 464, 500, 616, 635, 658
SinI GGWCC 1 cut(s) 673
SsiI CCGC 2 cut(s) 9, 643
SspI AATATT 2 cut(s) 106, 175
StyD4I CCNGG 2 cut(s) 87, 156
TaiI ACGT 1 cut(s) 635
TauI GCSGC 2 cut(s) 12, 645
TfiI GAWTC 9 cut(s) 98, 113, 128, 167, 182, 197, 251, 347, 383
Tru1I TTAA 2 cut(s) 422, 703
Tru9I TTAA 2 cut(s) 422, 703
TspDTI ATGAA 9 cut(s) 249, 264, 279, 297, 315, 330, 345, 360, 602
VpaK11BI GGWCC 1 cut(s) 673
XapI RAATTY 6 cut(s) 236, 266, 284, 302, 317, 332
XceI RCATGY 1 cut(s) 453
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.