Rh2DG372100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000181
Physical Location & Seq
Reverse (-)
52974219 .. 52977695
3477 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG372100.1

Sequence Viewer

Length: 672 bp
ATGTCTCTTGGAAAAGCAGCGAAGATCGACAATGTGGAGCGAATATCGACCAGTCACAAAGATCGTCGGTTTAAATTGGAAAAAGCAGCTAAAGAGCGGGTTCTCTCTAAGAATTTTCCTGATGTGTCTTTGTCGGACGAGGTAAAAAACAGTTTGGTGGAAAAGTTAGGAAACTCTTTTTGGGCATTCGTAGAAGATGATTCGTTGGAAGATGAAGTAGAGGATTTGTTGGTATGTGAAGAAAAGGCTTTGTTGGAACATGAAGAAAAGGCTGTGTTGGACGAGCTAGCCAAGGCAAATTTGGAAGAGGAAGAAAAGGCTTCTGGTACCAATTCAGTAGGAGACAAGAAACCTTCTTTCACAGAACTAGGAGATGAAATGGATTGGGGAGTTTGTAGAGTTTGTTTGAAGGAAAATGAGCACCATTTTTCACATTGCCCGTACCTTTTCTTTGGTGTCCCGGACGGCGCAACTATTGGACCTGGGTATGCATTAGCCTGCAAGGAATGTTATGAGGTGGATGGCCACCCTGACAGACCCTGGGAAGCGATCGCTGTTAGAAGGGTGTGCGACTTTTGCATATGGCGTGCACATTGGACTGAAGACTGCCCATATCAGGTACCAGAGGGCGATCGTGCCTTATTGAGTACAAACCAAATAAGCACAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

223

Amino Acids

25.2

Weight (kDa)

4.75

Isoelectric Point (pI)

29.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000181)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 326, 619
AccB1I GGYRCC 2 cut(s) 326, 619
AccBSI CCGCTC 1 cut(s) 97
AciI CCGC 1 cut(s) 97
AcoI YGGCCR 1 cut(s) 523
AcsI RAATTY 2 cut(s) 112, 298
AcuI CTGAAG 1 cut(s) 621
AfaI GTAC 4 cut(s) 328, 443, 621, 649
AfiI CCNNNNNNNGG 1 cut(s) 616
AgsI TTSAA 1 cut(s) 409
AjnI CCWGG 2 cut(s) 481, 539
AjuI GAANNNNNNNTTGG 2 cut(s) 163, 195
AluBI AGCT 2 cut(s) 89, 286
AluI AGCT 2 cut(s) 89, 286
Alw21I GWGCWC 2 cut(s) 423, 592
Alw26I GTCTC 2 cut(s) 9, 336
Alw44I GTGCAC 1 cut(s) 588
AlwNI CAGNNNCTG 1 cut(s) 540
AoxI GGCC 1 cut(s) 523
ApaLI GTGCAC 1 cut(s) 588
ApeKI GCWGC 2 cut(s) 17, 86
ApoI RAATTY 2 cut(s) 112, 298
AsiSI GCGATCGC 1 cut(s) 552
Asp718I GGTACC 2 cut(s) 326, 619
AspLEI GCGC 1 cut(s) 470
AspS9I GGNCC 1 cut(s) 479
AsuC2I CCSGG 1 cut(s) 461
AsuNHI GCTAGC 1 cut(s) 286
AvaII GGWCC 1 cut(s) 479
BaeGI GKGCMC 1 cut(s) 592
BalI TGGCCA 1 cut(s) 525
BanI GGYRCC 2 cut(s) 326, 619
BbsI GAAGAC 1 cut(s) 609
Bbv12I GWGCWC 2 cut(s) 423, 592
BbvI GCAGC 2 cut(s) 29, 98
BccI CCATC 1 cut(s) 515
BceAI ACGGC 1 cut(s) 481
BciT130I CCWGG 2 cut(s) 483, 541
BcnI CCSGG 1 cut(s) 461
BcoDI GTCTC 2 cut(s) 9, 336
BfaI CTAG 3 cut(s) 287, 368, 670
BisI GCNGC 2 cut(s) 18, 87
BlsI GCNGC 2 cut(s) 19, 88
Bme1390I CCNGG 3 cut(s) 461, 483, 541
Bme18I GGWCC 1 cut(s) 479
BmgT120I GGNCC 1 cut(s) 479
BmiI GGNNCC 2 cut(s) 328, 621
BmrFI CCNGG 3 cut(s) 461, 483, 541
BmtI GCTAGC 1 cut(s) 290
BpiI GAAGAC 1 cut(s) 609
BpuMI CCSGG 1 cut(s) 461
BsaJI CCNNGG 4 cut(s) 291, 482, 539, 540
Bsc4I CCNNNNNNNGG 1 cut(s) 616
Bse1I ACTGG 1 cut(s) 51
Bse3DI GCAATG 1 cut(s) 433
BseBI CCWGG 2 cut(s) 483, 541
BseDI CCNNGG 4 cut(s) 291, 482, 539, 540
BseGI GGATG 1 cut(s) 526
BseLI CCNNNNNNNGG 1 cut(s) 616
BseMI GCAATG 1 cut(s) 433
BseNI ACTGG 1 cut(s) 51
BseSI GKGCMC 1 cut(s) 592
BseXI GCAGC 2 cut(s) 29, 98
Bsh1285I CGRYCG 2 cut(s) 552, 634
BshFI GGCC 1 cut(s) 525
BshNI GGYRCC 2 cut(s) 326, 619
BsiEI CGRYCG 2 cut(s) 552, 634
BsiHKAI GWGCWC 2 cut(s) 423, 592
BsiSI CCGG 1 cut(s) 461
BslFI GGGAC 1 cut(s) 443
BslI CCNNNNNNNGG 1 cut(s) 616
BsmAI GTCTC 2 cut(s) 9, 336
BsmFI GGGAC 1 cut(s) 443
BsmI GAATGC 1 cut(s) 185
BsnI GGCC 1 cut(s) 525
Bsp1286I GDGCHC 2 cut(s) 423, 592
Bsp143I GATC 4 cut(s) 24, 61, 549, 631
BspACI CCGC 1 cut(s) 97
BspANI GGCC 1 cut(s) 525
BspLI GGNNCC 2 cut(s) 328, 621
BspOI GCTAGC 1 cut(s) 290
BspT107I GGYRCC 2 cut(s) 326, 619
BsrBI CCGCTC 1 cut(s) 97
BsrDI GCAATG 1 cut(s) 433
BsrI ACTGG 1 cut(s) 51
BssECI CCNNGG 4 cut(s) 291, 482, 539, 540
BssMI GATC 4 cut(s) 24, 61, 549, 631
BssT1I CCWWGG 1 cut(s) 291
Bst2UI CCWGG 2 cut(s) 483, 541
Bst4CI ACNGT 1 cut(s) 152
Bst6I CTCTTC 1 cut(s) 300
BstC8I GCNNGC 3 cut(s) 288, 499, 588
BstDEI CTNAG 1 cut(s) 108
BstF5I GGATG 1 cut(s) 526
BstHHI GCGC 1 cut(s) 470
BstKTI GATC 4 cut(s) 27, 64, 552, 634
BstMAI GTCTC 2 cut(s) 9, 336
BstMBI GATC 4 cut(s) 24, 61, 549, 631
BstMCI CGRYCG 2 cut(s) 552, 634
BstMWI GCNNNNNNNGC 1 cut(s) 576
BstNI CCWGG 2 cut(s) 483, 541
BstSCI CCNGG 3 cut(s) 459, 481, 539
BstSLI GKGCMC 1 cut(s) 592
BstV1I GCAGC 2 cut(s) 29, 98
BstV2I GAAGAC 1 cut(s) 609
BsuRI GGCC 1 cut(s) 525
BtsCI GGATG 1 cut(s) 526
Cac8I GCNNGC 3 cut(s) 288, 499, 588
CaiI CAGNNNCTG 1 cut(s) 540
CfoI GCGC 1 cut(s) 470
Cfr13I GGNCC 1 cut(s) 479
Csp6I GTAC 4 cut(s) 327, 442, 620, 648
CviAII CATG 1 cut(s) 260
CviJI RGCY 8 cut(s) 89, 248, 272, 286, 290, 320, 497, 525
CviKI_1 RGCY 8 cut(s) 89, 248, 272, 286, 290, 320, 497, 525
CviQI GTAC 4 cut(s) 327, 442, 620, 648
DdeI CTNAG 1 cut(s) 108
DpnI GATC 4 cut(s) 26, 63, 551, 633
DpnII GATC 4 cut(s) 24, 61, 549, 631
DraI TTTAAA 1 cut(s) 73
EaeI YGGCCR 1 cut(s) 523
Eam1104I CTCTTC 1 cut(s) 300
EarI CTCTTC 1 cut(s) 300
Eco130I CCWWGG 1 cut(s) 291
Eco47I GGWCC 1 cut(s) 479
Eco57I CTGAAG 1 cut(s) 621
EcoRII CCWGG 2 cut(s) 481, 539
EcoT14I CCWWGG 1 cut(s) 291
EcoT22I ATGCAT 1 cut(s) 493
ErhI CCWWGG 1 cut(s) 291
FaeI CATG 1 cut(s) 263
FaiI YATR 7 cut(s) 235, 261, 489, 513, 581, 583, 613
FaqI GGGAC 1 cut(s) 443
FatI CATG 1 cut(s) 259
FauI CCCGC 1 cut(s) 90
FauNDI CATATG 1 cut(s) 581
Fnu4HI GCNGC 2 cut(s) 18, 87
FokI GGATG 1 cut(s) 533
Fsp4HI GCNGC 2 cut(s) 18, 87
FspBI CTAG 3 cut(s) 287, 368, 670
GlaI GCGC 1 cut(s) 469
GluI GCNGC 2 cut(s) 18, 87
HaeIII GGCC 1 cut(s) 525
HapII CCGG 1 cut(s) 461
HhaI GCGC 1 cut(s) 470
Hin1II CATG 1 cut(s) 263
Hin6I GCGC 1 cut(s) 468
HinP1I GCGC 1 cut(s) 468
HinfI GANTC 1 cut(s) 200
HpaII CCGG 1 cut(s) 461
Hpy166II GTNNAC 1 cut(s) 590
Hpy188I TCNGA 1 cut(s) 136
Hpy188III TCNNGA 1 cut(s) 119
Hpy8I GTNNAC 1 cut(s) 590
Hpy99I CGWCG 1 cut(s) 69
HpyAV CCTTC 3 cut(s) 363, 403, 555
HpyCH4III ACNGT 1 cut(s) 152
HpyCH4V TGCA 4 cut(s) 491, 501, 579, 590
HpyF10VI GCNNNNNNNGC 1 cut(s) 576
HpyF3I CTNAG 1 cut(s) 108
Hsp92II CATG 1 cut(s) 263
HspAI GCGC 1 cut(s) 468
KpnI GGTACC 2 cut(s) 330, 623
Kzo9I GATC 4 cut(s) 24, 61, 549, 631
LmnI GCTCC 1 cut(s) 37
Lsp1109I GCAGC 2 cut(s) 29, 98
MaeI CTAG 3 cut(s) 287, 368, 670
MaeIII GTNAC 1 cut(s) 53
MalI GATC 4 cut(s) 26, 63, 551, 633
MbiI CCGCTC 1 cut(s) 97
MboI GATC 4 cut(s) 24, 61, 549, 631
MboII GAAGA 8 cut(s) 34, 206, 221, 251, 275, 317, 323, 614
MhlI GDGCHC 2 cut(s) 423, 592
MlsI TGGCCA 1 cut(s) 525
MluCI AATT 4 cut(s) 74, 112, 298, 331
MluNI TGGCCA 1 cut(s) 525
MmeI TCCRAC 4 cut(s) 114, 186, 234, 258
MnlI CCTC 5 cut(s) 133, 214, 301, 508, 619
Mox20I TGGCCA 1 cut(s) 525
Mph1103I ATGCAT 1 cut(s) 493
MscI TGGCCA 1 cut(s) 525
MseI TTAA 1 cut(s) 72
Msp20I TGGCCA 1 cut(s) 525
MspI CCGG 1 cut(s) 461
MspR9I CCNGG 3 cut(s) 461, 483, 541
Mva1269I GAATGC 1 cut(s) 185
MvaI CCWGG 2 cut(s) 483, 541
MwoI GCNNNNNNNGC 1 cut(s) 576
NciI CCSGG 1 cut(s) 461
NdeI CATATG 1 cut(s) 581
NdeII GATC 4 cut(s) 24, 61, 549, 631
NheI GCTAGC 1 cut(s) 286
NlaIII CATG 1 cut(s) 263
NlaIV GGNNCC 2 cut(s) 328, 621
NmuCI GTSAC 1 cut(s) 53
NsiI ATGCAT 1 cut(s) 493
PasI CCCWGGG 1 cut(s) 540
PctI GAATGC 1 cut(s) 185
PfeI GAWTC 1 cut(s) 200
PfoI TCCNGGA 1 cut(s) 459
PkrI GCNGC 2 cut(s) 19, 88
Ple19I CGATCG 2 cut(s) 552, 634
Psp6I CCWGG 2 cut(s) 481, 539
PspGI CCWGG 2 cut(s) 481, 539
PspN4I GGNNCC 2 cut(s) 328, 621
PspPI GGNCC 1 cut(s) 479
PstNI CAGNNNCTG 1 cut(s) 540
PvuI CGATCG 2 cut(s) 552, 634
RgaI GCGATCGC 1 cut(s) 552
RsaI GTAC 4 cut(s) 328, 443, 621, 649
RsaNI GTAC 4 cut(s) 327, 442, 620, 648
SaqAI TTAA 1 cut(s) 72
SatI GCNGC 2 cut(s) 18, 87
Sau3AI GATC 4 cut(s) 24, 61, 549, 631
Sau96I GGNCC 1 cut(s) 479
ScrFI CCNGG 3 cut(s) 461, 483, 541
SduI GDGCHC 2 cut(s) 423, 592
SetI ASST 8 cut(s) 91, 144, 288, 355, 447, 484, 519, 621
SfaAI GCGATCGC 1 cut(s) 552
SgfI GCGATCGC 1 cut(s) 552
SinI GGWCC 1 cut(s) 479
Sse9I AATT 4 cut(s) 74, 112, 298, 331
SsiI CCGC 1 cut(s) 97
SspMI CTAG 3 cut(s) 287, 368, 670
StyD4I CCNGG 3 cut(s) 459, 481, 539
StyI CCWWGG 1 cut(s) 291
TaaI ACNGT 1 cut(s) 152
TaqI TCGA 2 cut(s) 27, 47
TasI AATT 4 cut(s) 74, 112, 298, 331
TatI WGTACW 1 cut(s) 647
TfiI GAWTC 1 cut(s) 200
Tru1I TTAA 1 cut(s) 72
Tru9I TTAA 1 cut(s) 72
TseFI GTSAC 1 cut(s) 53
TseI GCWGC 2 cut(s) 17, 86
Tsp45I GTSAC 1 cut(s) 53
TspDTI ATGAA 3 cut(s) 228, 276, 390
VneI GTGCAC 1 cut(s) 588
VpaK11BI GGWCC 1 cut(s) 479
XapI RAATTY 2 cut(s) 112, 298
XcmI CCANNNNNNNNNTGG 1 cut(s) 298
XspI CTAG 3 cut(s) 287, 368, 670
Zsp2I ATGCAT 1 cut(s) 493
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.