Rh2DG509600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000181
Physical Location & Seq
Forward (+)
73396619 .. 73397902
1284 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG509600.1

Sequence Viewer

Length: 594 bp
ATGTCTCTTGTCGAATCAGAATTCTCCAAGGATCCGAACCCGAACCAGGTCCCGCCGGAGGCGGACGACAAGATCCAGACTCATGGAAAAAACAAAGCTGCTGAAGACTCTCTGTCTCAACTTGAAGTAGAGGAGGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGAAGAAGAAGATGATGATGATGATGAAGAAGAAGCAGAAGAAGAAGAAGAAGAATTTGAGATGTGTGATGTTTGTTTGAAGGACAAGGAACACTGGACAGATGAATGCCCATACCTGGTTCGTATCCCAAACCCAATGGAAGTAACTCTTGGCAAAGGTTATTATATGGTTTGTGTGCACTGTAATCTGAGGGGTGGCCACTCTGATATAGTTGGTACACAATGTAAAGTGTGGGGTGACCACCCTGATAGGAGGTGGAAAGGACGTGCTATTGTCAAGGTCTGTGGTATTTGTGAGGGCGTACGCCACTGGTCTGCAGAGTGCCCAAAAAAGCACTTATTACAAAAGCAAAAGAGTCTGTTGGAGTGTGCTGCTGAATATCGGTCGTGGTTGGCTACCAAAAAATGTCAAGCTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

197

Amino Acids

22.75

Weight (kDa)

4.42

Isoelectric Point (pI)

73.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000181)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 53, 62
AclWI GGATC 3 cut(s) 26, 39, 67
AcoI YGGCCR 1 cut(s) 370
AcsI RAATTY 2 cut(s) 20, 227
AcuI CTGAAG 1 cut(s) 123
AfaI GTAC 2 cut(s) 391, 477
AfiI CCNNNNNNNGG 3 cut(s) 46, 58, 289
AgsI TTSAA 2 cut(s) 125, 253
AhdI GACNNNNNGTC 1 cut(s) 112
AjiI CACGTC 1 cut(s) 440
AjnI CCWGG 2 cut(s) 45, 288
AjuI GAANNNNNNNTTGG 2 cut(s) 306, 338
AluBI AGCT 2 cut(s) 98, 587
AluI AGCT 2 cut(s) 98, 587
Alw21I GWGCWC 1 cut(s) 354
Alw26I GTCTC 2 cut(s) 9, 120
Alw44I GTGCAC 1 cut(s) 350
AlwI GGATC 3 cut(s) 26, 39, 67
AoxI GGCC 1 cut(s) 370
ApaLI GTGCAC 1 cut(s) 350
ApeKI GCWGC 3 cut(s) 98, 545, 587
ApoI RAATTY 2 cut(s) 20, 227
AspS9I GGNCC 1 cut(s) 49
AsuHPI GGTGA 1 cut(s) 422
AvaII GGWCC 1 cut(s) 49
BaeGI GKGCMC 2 cut(s) 354, 500
BalI TGGCCA 1 cut(s) 372
BamHI GGATCC 1 cut(s) 31
BbsI GAAGAC 1 cut(s) 111
Bbv12I GWGCWC 1 cut(s) 354
BbvI GCAGC 3 cut(s) 85, 532, 574
BciT130I CCWGG 2 cut(s) 47, 290
BciVI GTATCC 1 cut(s) 308
BcoDI GTCTC 2 cut(s) 9, 120
BfmI CTRYAG 1 cut(s) 489
BfuI GTATCC 1 cut(s) 308
BisI GCNGC 3 cut(s) 99, 546, 588
BlsI GCNGC 3 cut(s) 100, 547, 589
Bme1390I CCNGG 2 cut(s) 47, 290
Bme18I GGWCC 1 cut(s) 49
BmeRI GACNNNNNGTC 1 cut(s) 112
BmgBI CACGTC 1 cut(s) 440
BmgT120I GGNCC 1 cut(s) 49
BmiI GGNNCC 2 cut(s) 33, 51
BmrFI CCNGG 2 cut(s) 47, 290
BpiI GAAGAC 1 cut(s) 111
BsaJI CCNNGG 1 cut(s) 27
Bsc4I CCNNNNNNNGG 3 cut(s) 46, 58, 289
Bse1I ACTGG 2 cut(s) 272, 488
BseBI CCWGG 2 cut(s) 47, 290
BseDI CCNNGG 1 cut(s) 27
BseLI CCNNNNNNNGG 3 cut(s) 46, 58, 289
BseMII CTCAG 1 cut(s) 353
BseNI ACTGG 2 cut(s) 272, 488
BseSI GKGCMC 2 cut(s) 354, 500
BseXI GCAGC 3 cut(s) 85, 532, 574
Bsh1285I CGRYCG 1 cut(s) 560
BshFI GGCC 1 cut(s) 372
BsiEI CGRYCG 1 cut(s) 560
BsiHKAI GWGCWC 1 cut(s) 354
BsiSI CCGG 1 cut(s) 56
BsiWI CGTACG 1 cut(s) 475
BslFI GGGAC 1 cut(s) 35
BslI CCNNNNNNNGG 3 cut(s) 46, 58, 289
BsmAI GTCTC 2 cut(s) 9, 120
BsmFI GGGAC 1 cut(s) 35
BsmI GAATGC 1 cut(s) 284
BsnI GGCC 1 cut(s) 372
Bsp1286I GDGCHC 2 cut(s) 354, 500
Bsp143I GATC 2 cut(s) 31, 72
BspACI CCGC 2 cut(s) 53, 62
BspANI GGCC 1 cut(s) 372
BspCNI CTCAG 1 cut(s) 354
BspLI GGNNCC 2 cut(s) 33, 51
BspMAI CTGCAG 1 cut(s) 493
BspPI GGATC 3 cut(s) 26, 39, 67
BsrI ACTGG 2 cut(s) 272, 488
BssECI CCNNGG 1 cut(s) 27
BssMI GATC 2 cut(s) 31, 72
BssT1I CCWWGG 1 cut(s) 27
Bst2UI CCWGG 2 cut(s) 47, 290
Bst4CI ACNGT 1 cut(s) 356
Bst6I CTCTTC 2 cut(s) 135, 165
BstDEI CTNAG 1 cut(s) 362
BstEII GGTNACC 1 cut(s) 410
BstKTI GATC 2 cut(s) 34, 75
BstMAI GTCTC 2 cut(s) 9, 120
BstMBI GATC 2 cut(s) 31, 72
BstMCI CGRYCG 1 cut(s) 560
BstNI CCWGG 2 cut(s) 47, 290
BstPI GGTNACC 1 cut(s) 410
BstSCI CCNGG 2 cut(s) 45, 288
BstSFI CTRYAG 1 cut(s) 489
BstSLI GKGCMC 2 cut(s) 354, 500
BstV1I GCAGC 3 cut(s) 85, 532, 574
BstV2I GAAGAC 1 cut(s) 111
BstX2I RGATCY 2 cut(s) 31, 72
BstXI CCANNNNNNTGG 1 cut(s) 83
BstYI RGATCY 2 cut(s) 31, 72
BsuI GTATCC 1 cut(s) 308
BsuRI GGCC 1 cut(s) 372
BtrI CACGTC 1 cut(s) 440
BtsIMutI CAGTG 3 cut(s) 265, 352, 481
Cfr13I GGNCC 1 cut(s) 49
CsiI ACCWGGT 2 cut(s) 45, 288
Csp6I GTAC 2 cut(s) 390, 476
CspCI CAANNNNNGTGG 2 cut(s) 439, 474
CviAII CATG 1 cut(s) 83
CviJI RGCY 4 cut(s) 98, 372, 569, 587
CviKI_1 RGCY 4 cut(s) 98, 372, 569, 587
CviQI GTAC 2 cut(s) 390, 476
DdeI CTNAG 1 cut(s) 362
DpnI GATC 2 cut(s) 33, 74
DpnII GATC 2 cut(s) 31, 72
DriI GACNNNNNGTC 1 cut(s) 112
EaeI YGGCCR 1 cut(s) 370
Eam1104I CTCTTC 2 cut(s) 135, 165
Eam1105I GACNNNNNGTC 1 cut(s) 112
EarI CTCTTC 2 cut(s) 135, 165
EciI GGCGGA 1 cut(s) 77
Eco130I CCWWGG 1 cut(s) 27
Eco47I GGWCC 1 cut(s) 49
Eco57I CTGAAG 1 cut(s) 123
Eco91I GGTNACC 1 cut(s) 410
EcoO109I RGGNCCY 1 cut(s) 49
EcoO65I GGTNACC 1 cut(s) 410
EcoRI GAATTC 1 cut(s) 20
EcoRII CCWGG 2 cut(s) 45, 288
EcoT14I CCWWGG 1 cut(s) 27
ErhI CCWWGG 1 cut(s) 27
FaeI CATG 1 cut(s) 86
FaiI YATR 5 cut(s) 84, 286, 339, 341, 383
FalI AAGNNNNNCTT 2 cut(s) 306, 338
FaqI GGGAC 1 cut(s) 35
FatI CATG 1 cut(s) 82
FauI CCCGC 1 cut(s) 60
Fnu4HI GCNGC 3 cut(s) 99, 546, 588
Fsp4HI GCNGC 3 cut(s) 99, 546, 588
GluI GCNGC 3 cut(s) 99, 546, 588
HaeIII GGCC 1 cut(s) 372
HapII CCGG 1 cut(s) 56
Hin1II CATG 1 cut(s) 86
HinfI GANTC 4 cut(s) 14, 79, 107, 529
HpaII CCGG 1 cut(s) 56
HphI GGTGA 1 cut(s) 422
Hpy166II GTNNAC 2 cut(s) 352, 392
Hpy188I TCNGA 4 cut(s) 19, 36, 363, 379
Hpy188III TCNNGA 1 cut(s) 76
Hpy8I GTNNAC 2 cut(s) 352, 392
HpyAV CCTTC 1 cut(s) 247
HpyCH4III ACNGT 1 cut(s) 356
HpyCH4IV ACGT 1 cut(s) 439
HpyCH4V TGCA 2 cut(s) 352, 491
HpyF3I CTNAG 1 cut(s) 362
HpySE526I ACGT 1 cut(s) 439
Hsp92II CATG 1 cut(s) 86
Kzo9I GATC 2 cut(s) 31, 72
LpnPI CCDG 9 cut(s) 32, 59, 69, 89, 253, 275, 302, 432, 469
Lsp1109I GCAGC 3 cut(s) 85, 532, 574
MabI ACCWGGT 2 cut(s) 45, 288
MaeII ACGT 1 cut(s) 439
MaeIII GTNAC 2 cut(s) 316, 410
MalI GATC 2 cut(s) 33, 74
MboI GATC 2 cut(s) 31, 72
MflI RGATCY 2 cut(s) 31, 72
MhlI GDGCHC 2 cut(s) 354, 500
MlsI TGGCCA 1 cut(s) 372
MluCI AATT 2 cut(s) 20, 227
MluNI TGGCCA 1 cut(s) 372
MlyI GAGTC 3 cut(s) 73, 101, 538
MmeI TCCRAC 1 cut(s) 516
Mox20I TGGCCA 1 cut(s) 372
MscI TGGCCA 1 cut(s) 372
Msp20I TGGCCA 1 cut(s) 372
MspI CCGG 1 cut(s) 56
MspR9I CCNGG 2 cut(s) 47, 290
Mva1269I GAATGC 1 cut(s) 284
MvaI CCWGG 2 cut(s) 47, 290
NdeII GATC 2 cut(s) 31, 72
NlaIII CATG 1 cut(s) 86
NlaIV GGNNCC 2 cut(s) 33, 51
NmuCI GTSAC 1 cut(s) 410
PctI GAATGC 1 cut(s) 284
PfeI GAWTC 1 cut(s) 14
Pfl23II CGTACG 1 cut(s) 475
PkrI GCNGC 3 cut(s) 100, 547, 589
PleI GAGTC 3 cut(s) 73, 101, 537
PpsI GAGTC 3 cut(s) 73, 101, 537
PpuMI RGGWCCY 1 cut(s) 49
Psp5II RGGWCCY 1 cut(s) 49
Psp6I CCWGG 2 cut(s) 45, 288
PspEI GGTNACC 1 cut(s) 410
PspGI CCWGG 2 cut(s) 45, 288
PspLI CGTACG 1 cut(s) 475
PspN4I GGNNCC 2 cut(s) 33, 51
PspPI GGNCC 1 cut(s) 49
PspPPI RGGWCCY 1 cut(s) 49
PstI CTGCAG 1 cut(s) 493
PsuI RGATCY 2 cut(s) 31, 72
RsaI GTAC 2 cut(s) 391, 477
RsaNI GTAC 2 cut(s) 390, 476
SatI GCNGC 3 cut(s) 99, 546, 588
Sau3AI GATC 2 cut(s) 31, 72
Sau96I GGNCC 1 cut(s) 49
SchI GAGTC 3 cut(s) 73, 101, 538
ScrFI CCNGG 2 cut(s) 47, 290
SduI GDGCHC 2 cut(s) 354, 500
SetI ASST 8 cut(s) 51, 100, 291, 334, 431, 442, 456, 589
SexAI ACCWGGT 2 cut(s) 45, 288
SfcI CTRYAG 1 cut(s) 489
SinI GGWCC 1 cut(s) 49
Sse9I AATT 2 cut(s) 20, 227
SsiI CCGC 2 cut(s) 53, 62
StyD4I CCNGG 2 cut(s) 45, 288
StyI CCWWGG 1 cut(s) 27
TaaI ACNGT 1 cut(s) 356
TaiI ACGT 1 cut(s) 442
TaqI TCGA 1 cut(s) 12
TaqII GACCGA 1 cut(s) 546
TasI AATT 2 cut(s) 20, 227
TfiI GAWTC 1 cut(s) 14
TscAI CASTG 3 cut(s) 272, 359, 488
TseFI GTSAC 1 cut(s) 410
TseI GCWGC 3 cut(s) 98, 545, 587
Tsp45I GTSAC 1 cut(s) 410
TspDTI ATGAA 2 cut(s) 213, 291
TspRI CASTG 3 cut(s) 272, 359, 488
VneI GTGCAC 1 cut(s) 350
VpaK11BI GGWCC 1 cut(s) 49
XapI RAATTY 2 cut(s) 20, 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.