Rh3AG083900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0000181
Physical Location & Seq
Reverse (-)
6775904 .. 6790406
14503 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG083900.1

Sequence Viewer

Length: 432 bp
ATGGAGGTGGCGAGGTCATCGGAATGTTTCCAAAGGCAGGACCTGGCCGTCGTCCCCAGGCCTGATGCCACCAAGGCGGAAGAGCCAAAGGCTCGATGGCCTTATATCAGCAAGTTACCTGATGGTAGGACGATCATAATCTCAAAGATGAACCCACCTACTGAGCGTCCTTGCGCCGCTTATACCAAGACGCGCCCTGATGATCCTGGTACTTTCTCTCAAAAATCAAAGCTCCGTGTCACTGGTCGGCCCATCCCTCGTCCGGCAGTCACTGGCCAAACTCGATGCCCGTACCTTGATCTTCTCCCAAAGAATGCAACTGTTAGCAGTGGCTGTGACGTAGTTTGTACGGGTTGTAATCGTTCATTCGTTTGTTTTCAGGGGGCTGCTAGCTGTAACCAAGACGCTGGTCGTGCTGAGCTCAGGTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

143

Amino Acids

15.69

Weight (kDa)

9.28

Isoelectric Point (pI)

54.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000181)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 47
AccII CGCG 1 cut(s) 193
AciI CCGC 2 cut(s) 77, 177
AclWI GGATC 1 cut(s) 197
AcoI YGGCCR 2 cut(s) 45, 274
AfaI GTAC 3 cut(s) 211, 293, 349
AfiI CCNNNNNNNGG 2 cut(s) 37, 262
AjnI CCWGG 3 cut(s) 42, 56, 205
AluBI AGCT 3 cut(s) 232, 393, 421
AluI AGCT 3 cut(s) 232, 393, 421
Alw21I GWGCWC 1 cut(s) 423
AlwI GGATC 1 cut(s) 197
AlwNI CAGNNNCTG 3 cut(s) 43, 272, 333
AoxI GGCC 5 cut(s) 45, 59, 98, 248, 274
ApeKI GCWGC 1 cut(s) 386
AspLEI GCGC 2 cut(s) 176, 195
AspS9I GGNCC 2 cut(s) 40, 249
AsuNHI GCTAGC 1 cut(s) 389
AvaII GGWCC 1 cut(s) 40
BalI TGGCCA 1 cut(s) 276
BanII GRGCYC 1 cut(s) 423
Bbv12I GWGCWC 1 cut(s) 423
BbvI GCAGC 1 cut(s) 373
BccI CCATC 3 cut(s) 90, 116, 260
BceAI ACGGC 1 cut(s) 32
BciT130I CCWGG 3 cut(s) 44, 58, 207
BfaI CTAG 1 cut(s) 390
BglI GCCNNNNNGGC 1 cut(s) 74
BisI GCNGC 2 cut(s) 177, 387
BlpI GCTNAGC 1 cut(s) 417
BlsI GCNGC 2 cut(s) 178, 388
Bme1390I CCNGG 3 cut(s) 44, 58, 207
Bme18I GGWCC 1 cut(s) 40
BmgT120I GGNCC 2 cut(s) 40, 249
BmrFI CCNGG 3 cut(s) 44, 58, 207
BmsI GCATC 2 cut(s) 55, 275
BmtI GCTAGC 1 cut(s) 393
BoxI GACNNNNGTC 1 cut(s) 408
Bpu10I CCTNAGC 1 cut(s) 422
Bpu1102I GCTNAGC 1 cut(s) 417
BsaBI GATNNNNATC 1 cut(s) 137
BsaJI CCNNGG 2 cut(s) 56, 72
Bsc4I CCNNNNNNNGG 2 cut(s) 37, 262
Bse1I ACTGG 2 cut(s) 247, 277
Bse8I GATNNNNATC 1 cut(s) 137
BseBI CCWGG 3 cut(s) 44, 58, 207
BseDI CCNNGG 2 cut(s) 56, 72
BseGI GGATG 1 cut(s) 252
BseJI GATNNNNATC 1 cut(s) 137
BseLI CCNNNNNNNGG 2 cut(s) 37, 262
BseMII CTCAG 2 cut(s) 153, 408
BseNI ACTGG 2 cut(s) 247, 277
BseXI GCAGC 1 cut(s) 373
Bsh1236I CGCG 1 cut(s) 193
BshFI GGCC 5 cut(s) 47, 61, 100, 250, 276
BsiHKAI GWGCWC 1 cut(s) 423
BsiSI CCGG 1 cut(s) 263
BslFI GGGAC 1 cut(s) 38
BslI CCNNNNNNNGG 2 cut(s) 37, 262
BsmFI GGGAC 1 cut(s) 38
BsmI GAATGC 1 cut(s) 319
BsnI GGCC 5 cut(s) 47, 61, 100, 250, 276
Bsp1286I GDGCHC 1 cut(s) 423
Bsp143I GATC 3 cut(s) 132, 202, 298
Bsp1720I GCTNAGC 1 cut(s) 417
BspACI CCGC 2 cut(s) 77, 177
BspANI GGCC 5 cut(s) 47, 61, 100, 250, 276
BspCNI CTCAG 2 cut(s) 154, 409
BspFNI CGCG 1 cut(s) 193
BspOI GCTAGC 1 cut(s) 393
BspPI GGATC 1 cut(s) 197
BspQI GCTCTTC 1 cut(s) 75
BsrI ACTGG 2 cut(s) 247, 277
BssECI CCNNGG 2 cut(s) 56, 72
BssMI GATC 3 cut(s) 132, 202, 298
BssT1I CCWWGG 1 cut(s) 72
Bst2UI CCWGG 3 cut(s) 44, 58, 207
Bst4CI ACNGT 1 cut(s) 322
Bst6I CTCTTC 1 cut(s) 75
BstC8I GCNNGC 1 cut(s) 391
BstDEI CTNAG 3 cut(s) 162, 417, 422
BstF5I GGATG 1 cut(s) 252
BstFNI CGCG 1 cut(s) 193
BstHHI GCGC 2 cut(s) 176, 195
BstKTI GATC 3 cut(s) 135, 205, 301
BstMBI GATC 3 cut(s) 132, 202, 298
BstMWI GCNNNNNNNGC 2 cut(s) 74, 413
BstNI CCWGG 3 cut(s) 44, 58, 207
BstPAI GACNNNNGTC 1 cut(s) 408
BstSCI CCNGG 3 cut(s) 42, 56, 205
BstUI CGCG 1 cut(s) 193
BstV1I GCAGC 1 cut(s) 373
BstXI CCANNNNNNTGG 1 cut(s) 407
BsuRI GGCC 5 cut(s) 47, 61, 100, 250, 276
BtsCI GGATG 1 cut(s) 252
BtsI GCAGTG 1 cut(s) 334
BtsIMutI CAGTG 3 cut(s) 240, 270, 334
Cac8I GCNNGC 1 cut(s) 391
CaiI CAGNNNCTG 3 cut(s) 43, 272, 333
CfoI GCGC 2 cut(s) 176, 195
Cfr13I GGNCC 2 cut(s) 40, 249
CseI GACGC 3 cut(s) 155, 199, 413
Csp6I GTAC 3 cut(s) 210, 292, 348
CviQI GTAC 3 cut(s) 210, 292, 348
DdeI CTNAG 3 cut(s) 162, 417, 422
DpnI GATC 3 cut(s) 134, 204, 300
DpnII GATC 3 cut(s) 132, 202, 298
DrdI GACNNNNNNGTC 1 cut(s) 47
DseDI GACNNNNNNGTC 1 cut(s) 47
EaeI YGGCCR 2 cut(s) 45, 274
Eam1104I CTCTTC 1 cut(s) 75
EarI CTCTTC 1 cut(s) 75
EciI GGCGGA 1 cut(s) 92
Ecl136II GAGCTC 1 cut(s) 421
Eco130I CCWWGG 1 cut(s) 72
Eco147I AGGCCT 1 cut(s) 61
Eco24I GRGCYC 1 cut(s) 423
Eco47I GGWCC 1 cut(s) 40
Eco53kI GAGCTC 1 cut(s) 421
EcoICRI GAGCTC 1 cut(s) 421
EcoO109I RGGNCCY 1 cut(s) 40
EcoRII CCWGG 3 cut(s) 42, 56, 205
EcoT14I CCWWGG 1 cut(s) 72
EcoT38I GRGCYC 1 cut(s) 423
ErhI CCWWGG 1 cut(s) 72
FaiI YATR 4 cut(s) 105, 137, 183, 430
FaqI GGGAC 1 cut(s) 38
Fnu4HI GCNGC 2 cut(s) 177, 387
FokI GGATG 1 cut(s) 239
FriOI GRGCYC 1 cut(s) 423
Fsp4HI GCNGC 2 cut(s) 177, 387
FspBI CTAG 1 cut(s) 390
GlaI GCGC 2 cut(s) 175, 194
GluI GCNGC 2 cut(s) 177, 387
HaeIII GGCC 5 cut(s) 47, 61, 100, 250, 276
HapII CCGG 1 cut(s) 263
HgaI GACGC 3 cut(s) 155, 199, 413
HhaI GCGC 2 cut(s) 176, 195
Hin6I GCGC 2 cut(s) 174, 193
HinP1I GCGC 2 cut(s) 174, 193
HpaII CCGG 1 cut(s) 263
Hpy188I TCNGA 1 cut(s) 22
Hpy99I CGWCG 1 cut(s) 53
HpyCH4III ACNGT 1 cut(s) 322
HpyCH4IV ACGT 1 cut(s) 339
HpyCH4V TGCA 1 cut(s) 317
HpyF10VI GCNNNNNNNGC 2 cut(s) 74, 413
HpyF3I CTNAG 3 cut(s) 162, 417, 422
HpySE526I ACGT 1 cut(s) 339
HspAI GCGC 2 cut(s) 174, 193
Kzo9I GATC 3 cut(s) 132, 202, 298
LguI GCTCTTC 1 cut(s) 75
LmnI GCTCC 1 cut(s) 237
Lsp1109I GCAGC 1 cut(s) 373
LweI GCATC 2 cut(s) 55, 275
MaeI CTAG 1 cut(s) 390
MaeII ACGT 1 cut(s) 339
MaeIII GTNAC 5 cut(s) 114, 238, 268, 335, 395
MalI GATC 3 cut(s) 134, 204, 300
MboI GATC 3 cut(s) 132, 202, 298
MboII GAAGA 2 cut(s) 92, 293
MhlI GDGCHC 1 cut(s) 423
MlsI TGGCCA 1 cut(s) 276
MluNI TGGCCA 1 cut(s) 276
MnlI CCTC 2 cut(s) 6, 267
Mox20I TGGCCA 1 cut(s) 276
MscI TGGCCA 1 cut(s) 276
MslI CAYNNNNRTG 1 cut(s) 22
Msp20I TGGCCA 1 cut(s) 276
MspI CCGG 1 cut(s) 263
MspR9I CCNGG 3 cut(s) 44, 58, 207
Mva1269I GAATGC 1 cut(s) 319
MvaI CCWGG 3 cut(s) 44, 58, 207
MvnI CGCG 1 cut(s) 193
MwoI GCNNNNNNNGC 2 cut(s) 74, 413
NdeII GATC 3 cut(s) 132, 202, 298
NheI GCTAGC 1 cut(s) 389
NmuCI GTSAC 3 cut(s) 238, 268, 335
PceI AGGCCT 1 cut(s) 61
PciSI GCTCTTC 1 cut(s) 75
PctI GAATGC 1 cut(s) 319
PkrI GCNGC 2 cut(s) 178, 388
PpuMI RGGWCCY 1 cut(s) 40
PshAI GACNNNNGTC 1 cut(s) 408
Psp124BI GAGCTC 1 cut(s) 423
Psp5II RGGWCCY 1 cut(s) 40
Psp6I CCWGG 3 cut(s) 42, 56, 205
PspGI CCWGG 3 cut(s) 42, 56, 205
PspPI GGNCC 2 cut(s) 40, 249
PspPPI RGGWCCY 1 cut(s) 40
PstNI CAGNNNCTG 3 cut(s) 43, 272, 333
RsaI GTAC 3 cut(s) 211, 293, 349
RsaNI GTAC 3 cut(s) 210, 292, 348
RseI CAYNNNNRTG 1 cut(s) 22
SacI GAGCTC 1 cut(s) 423
SapI GCTCTTC 1 cut(s) 75
SatI GCNGC 2 cut(s) 177, 387
Sau3AI GATC 3 cut(s) 132, 202, 298
Sau96I GGNCC 2 cut(s) 40, 249
ScrFI CCNGG 3 cut(s) 44, 58, 207
SduI GDGCHC 1 cut(s) 423
SfaNI GCATC 2 cut(s) 55, 275
SinI GGWCC 1 cut(s) 40
SmiMI CAYNNNNRTG 1 cut(s) 22
SseBI AGGCCT 1 cut(s) 61
SsiI CCGC 2 cut(s) 77, 177
SspMI CTAG 1 cut(s) 390
SstI GAGCTC 1 cut(s) 423
StuI AGGCCT 1 cut(s) 61
StyD4I CCNGG 3 cut(s) 42, 56, 205
StyI CCWWGG 1 cut(s) 72
TaaI ACNGT 1 cut(s) 322
TaiI ACGT 1 cut(s) 342
TaqI TCGA 2 cut(s) 94, 283
TauI GCSGC 1 cut(s) 179
TscAI CASTG 3 cut(s) 247, 277, 334
TseFI GTSAC 3 cut(s) 238, 268, 335
TseI GCWGC 1 cut(s) 386
Tsp45I GTSAC 3 cut(s) 238, 268, 335
TspDTI ATGAA 2 cut(s) 164, 354
TspGWI ACGGA 1 cut(s) 224
TspRI CASTG 3 cut(s) 247, 277, 334
VpaK11BI GGWCC 1 cut(s) 40
XcmI CCANNNNNNNNNTGG 1 cut(s) 93
XspI CTAG 1 cut(s) 390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.