Prupe.2G227700_v2.0.a1

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000181
Physical Location & Seq
Reverse (-)
25343726 .. 25345338
1613 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G227700.1

Sequence Viewer

Length: 546 bp
ATGGCGCTTGATAACAACTGCTCTGCAAAGGACGACGGCGGCGGGGGAAAGGACCTTTCCCCGCAAGAGAGGGTCGGCTATGACACCGATGAGTCGCTTTGGAATTCAATTTTGAAGTCAAGGGAAAACAAGTCTAAACCACCAATGACTGCAGAGCAAAGGAGGTTTGAAGATCTTATGACTTATTTTGTTAACAACGTGTCACCGAATGTTGACTTTTTGAAGGCCCCGGACCCTCCTATACCCGCCGGTGAATGTAGGTATTGTTTAAAGGTGGATGATCACATTACACAACTGTGCCCCTACAAGTATGATGTCCCAAAGAATGCAATTCTTGGCAAGGGCTGTTCGGTTCAGTGTGTTGTCTGCGGATGTAGGTTTAGAGACTCATGTTGTGCCAAATGCGGCCATACCCGTGGACGTGCAATCCTCATGGATTGTAGAATCTGTGGGAAGTCATATGACCACTGGCCTGATATGTGCCCGCAACGCGATTTGAATTCTTCTTTTACGTGCGACCCTTATACTGGTTATATTTCTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

182

Amino Acids

20.3

Weight (kDa)

6.28

Isoelectric Point (pI)

42.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000181)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 492
AciI CCGC 7 cut(s) 39, 42, 62, 246, 369, 405, 485
AcoI YGGCCR 1 cut(s) 406
AcsI RAATTY 2 cut(s) 103, 499
AfiI CCNNNNNNNGG 1 cut(s) 527
AflIII ACRYGT 1 cut(s) 198
AgsI TTSAA 5 cut(s) 108, 115, 170, 223, 499
AjiI CACGTC 1 cut(s) 422
AleI CACNNNNGTG 1 cut(s) 295
Alw26I GTCTC 1 cut(s) 378
AoxI GGCC 3 cut(s) 225, 406, 470
ApoI RAATTY 2 cut(s) 103, 499
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 3 cut(s) 52, 226, 232
AsuC2I CCSGG 1 cut(s) 230
AsuHPI GGTGA 2 cut(s) 195, 263
AvaII GGWCC 2 cut(s) 52, 232
BaeGI GKGCMC 2 cut(s) 302, 485
BceAI ACGGC 1 cut(s) 52
BclI TGATCA 1 cut(s) 280
BcnI CCSGG 1 cut(s) 230
BcoDI GTCTC 1 cut(s) 378
BfaI CTAG 1 cut(s) 544
BfmI CTRYAG 1 cut(s) 150
BfoI RGCGCY 1 cut(s) 8
BglII AGATCT 1 cut(s) 172
BisI GCNGC 2 cut(s) 40, 406
BlsI GCNGC 2 cut(s) 41, 407
Bme1390I CCNGG 1 cut(s) 230
Bme18I GGWCC 2 cut(s) 52, 232
BmgBI CACGTC 1 cut(s) 422
BmgT120I GGNCC 3 cut(s) 52, 226, 232
BmiI GGNNCC 2 cut(s) 228, 234
BmrFI CCNGG 1 cut(s) 230
BpuMI CCSGG 1 cut(s) 230
BsaAI YACGTR 1 cut(s) 513
BsaJI CCNNGG 2 cut(s) 228, 415
Bsc4I CCNNNNNNNGG 1 cut(s) 527
Bse118I RCCGGY 1 cut(s) 248
Bse1I ACTGG 2 cut(s) 473, 532
BseDI CCNNGG 2 cut(s) 228, 415
BseGI GGATG 2 cut(s) 283, 377
BseLI CCNNNNNNNGG 1 cut(s) 527
BseNI ACTGG 2 cut(s) 473, 532
BseSI GKGCMC 2 cut(s) 302, 485
Bsh1236I CGCG 1 cut(s) 492
BshFI GGCC 3 cut(s) 227, 408, 472
BsiSI CCGG 2 cut(s) 230, 249
BslFI GGGAC 1 cut(s) 302
BslI CCNNNNNNNGG 1 cut(s) 527
BsmAI GTCTC 1 cut(s) 378
BsmFI GGGAC 1 cut(s) 302
BsmI GAATGC 1 cut(s) 331
BsnI GGCC 3 cut(s) 227, 408, 472
Bsp1286I GDGCHC 2 cut(s) 302, 485
Bsp143I GATC 2 cut(s) 172, 280
BspACI CCGC 7 cut(s) 39, 42, 62, 246, 369, 405, 485
BspANI GGCC 3 cut(s) 227, 408, 472
BspFNI CGCG 1 cut(s) 492
BspLI GGNNCC 2 cut(s) 228, 234
BspMAI CTGCAG 1 cut(s) 154
BsrFI RCCGGY 1 cut(s) 248
BsrI ACTGG 2 cut(s) 473, 532
BssAI RCCGGY 1 cut(s) 248
BssECI CCNNGG 2 cut(s) 228, 415
BssMI GATC 2 cut(s) 172, 280
Bst4CI ACNGT 1 cut(s) 297
BstBAI YACGTR 1 cut(s) 513
BstC8I GCNNGC 1 cut(s) 485
BstDSI CCRYGG 1 cut(s) 415
BstF5I GGATG 2 cut(s) 283, 377
BstFNI CGCG 1 cut(s) 492
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 2 cut(s) 175, 283
BstMAI GTCTC 1 cut(s) 378
BstMBI GATC 2 cut(s) 172, 280
BstMWI GCNNNNNNNGC 1 cut(s) 489
BstSCI CCNGG 1 cut(s) 228
BstSFI CTRYAG 1 cut(s) 150
BstSLI GKGCMC 2 cut(s) 302, 485
BstUI CGCG 1 cut(s) 492
BstX2I RGATCY 1 cut(s) 172
BstXI CCANNNNNNTGG 1 cut(s) 416
BstYI RGATCY 1 cut(s) 172
BsuRI GGCC 3 cut(s) 227, 408, 472
BtgI CCRYGG 1 cut(s) 415
BtrI CACGTC 1 cut(s) 422
BtsCI GGATG 2 cut(s) 283, 377
BtsIMutI CAGTG 2 cut(s) 362, 466
Cac8I GCNNGC 1 cut(s) 485
CfoI GCGC 1 cut(s) 7
Cfr10I RCCGGY 1 cut(s) 248
Cfr13I GGNCC 3 cut(s) 52, 226, 232
CviAII CATG 2 cut(s) 390, 433
CviJI RGCY 5 cut(s) 78, 227, 345, 408, 472
CviKI_1 RGCY 5 cut(s) 78, 227, 345, 408, 472
DpnI GATC 2 cut(s) 174, 282
DpnII GATC 2 cut(s) 172, 280
DraI TTTAAA 1 cut(s) 270
EaeI YGGCCR 1 cut(s) 406
Eco47I GGWCC 2 cut(s) 52, 232
EcoO109I RGGNCCY 2 cut(s) 52, 226
EcoRI GAATTC 2 cut(s) 103, 499
FaeI CATG 2 cut(s) 393, 436
FaqI GGGAC 1 cut(s) 302
FatI CATG 2 cut(s) 389, 432
FauI CCCGC 4 cut(s) 35, 69, 253, 492
FauNDI CATATG 1 cut(s) 460
FbaI TGATCA 1 cut(s) 280
Fnu4HI GCNGC 2 cut(s) 40, 406
FokI GGATG 2 cut(s) 290, 384
Fsp4HI GCNGC 2 cut(s) 40, 406
FspBI CTAG 1 cut(s) 544
GlaI GCGC 1 cut(s) 6
GluI GCNGC 2 cut(s) 40, 406
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 3 cut(s) 227, 408, 472
HapII CCGG 2 cut(s) 230, 249
HhaI GCGC 1 cut(s) 7
Hin1II CATG 2 cut(s) 393, 436
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HincII GTYRAC 2 cut(s) 193, 214
HindII GTYRAC 2 cut(s) 193, 214
HinfI GANTC 3 cut(s) 92, 386, 444
HpaI GTTAAC 1 cut(s) 193
HpaII CCGG 2 cut(s) 230, 249
HphI GGTGA 2 cut(s) 195, 263
Hpy166II GTNNAC 3 cut(s) 193, 214, 419
Hpy8I GTNNAC 3 cut(s) 193, 214, 419
Hpy99I CGWCG 1 cut(s) 38
HpyAV CCTTC 1 cut(s) 217
HpyCH4III ACNGT 1 cut(s) 297
HpyCH4IV ACGT 3 cut(s) 198, 421, 512
HpyCH4V TGCA 4 cut(s) 26, 152, 329, 425
HpyF10VI GCNNNNNNNGC 1 cut(s) 489
HpySE526I ACGT 3 cut(s) 198, 421, 512
Hsp92II CATG 2 cut(s) 393, 436
HspAI GCGC 1 cut(s) 5
Ksp22I TGATCA 1 cut(s) 280
KspAI GTTAAC 1 cut(s) 193
Kzo9I GATC 2 cut(s) 172, 280
LpnPI CCDG 5 cut(s) 243, 262, 454, 486, 513
MaeI CTAG 1 cut(s) 544
MaeII ACGT 3 cut(s) 198, 421, 512
MaeIII GTNAC 1 cut(s) 201
MalI GATC 2 cut(s) 174, 282
MboI GATC 2 cut(s) 172, 280
MboII GAAGA 2 cut(s) 182, 495
MflI RGATCY 1 cut(s) 172
MhlI GDGCHC 2 cut(s) 302, 485
MluCI AATT 4 cut(s) 103, 108, 330, 499
MlyI GAGTC 2 cut(s) 101, 380
MnlI CCTC 4 cut(s) 63, 156, 246, 440
MseI TTAA 2 cut(s) 192, 269
MslI CAYNNNNRTG 2 cut(s) 295, 414
MspI CCGG 2 cut(s) 230, 249
MspR9I CCNGG 1 cut(s) 230
Mva1269I GAATGC 1 cut(s) 331
MvnI CGCG 1 cut(s) 492
MwoI GCNNNNNNNGC 1 cut(s) 489
NciI CCSGG 1 cut(s) 230
NdeI CATATG 1 cut(s) 460
NdeII GATC 2 cut(s) 172, 280
NlaIII CATG 2 cut(s) 393, 436
NlaIV GGNNCC 2 cut(s) 228, 234
NmuCI GTSAC 1 cut(s) 201
OliI CACNNNNGTG 1 cut(s) 295
PctI GAATGC 1 cut(s) 331
PfeI GAWTC 1 cut(s) 444
PkrI GCNGC 2 cut(s) 41, 407
PleI GAGTC 2 cut(s) 100, 380
PpsI GAGTC 2 cut(s) 100, 380
Ppu21I YACGTR 1 cut(s) 513
PpuMI RGGWCCY 1 cut(s) 52
Psp5II RGGWCCY 1 cut(s) 52
PspN4I GGNNCC 2 cut(s) 228, 234
PspPI GGNCC 3 cut(s) 52, 226, 232
PspPPI RGGWCCY 1 cut(s) 52
PstI CTGCAG 1 cut(s) 154
PsuI RGATCY 1 cut(s) 172
RseI CAYNNNNRTG 2 cut(s) 295, 414
SaqAI TTAA 2 cut(s) 192, 269
SatI GCNGC 2 cut(s) 40, 406
Sau3AI GATC 2 cut(s) 172, 280
Sau96I GGNCC 3 cut(s) 52, 226, 232
SchI GAGTC 2 cut(s) 101, 380
ScrFI CCNGG 1 cut(s) 230
SduI GDGCHC 2 cut(s) 302, 485
SetI ASST 8 cut(s) 57, 167, 201, 263, 276, 380, 424, 515
SfcI CTRYAG 1 cut(s) 150
SgrAI CRCCGGYG 1 cut(s) 248
SinI GGWCC 2 cut(s) 52, 232
SmiMI CAYNNNNRTG 2 cut(s) 295, 414
Sse9I AATT 4 cut(s) 103, 108, 330, 499
SsiI CCGC 7 cut(s) 39, 42, 62, 246, 369, 405, 485
SspMI CTAG 1 cut(s) 544
StyD4I CCNGG 1 cut(s) 228
TaaI ACNGT 1 cut(s) 297
TaiI ACGT 3 cut(s) 201, 424, 515
TasI AATT 4 cut(s) 103, 108, 330, 499
TauI GCSGC 2 cut(s) 42, 408
TfiI GAWTC 1 cut(s) 444
Tru1I TTAA 2 cut(s) 192, 269
Tru9I TTAA 2 cut(s) 192, 269
TscAI CASTG 2 cut(s) 362, 473
TseFI GTSAC 1 cut(s) 201
Tsp45I GTSAC 1 cut(s) 201
TspRI CASTG 2 cut(s) 362, 473
VpaK11BI GGWCC 2 cut(s) 52, 232
XapI RAATTY 2 cut(s) 103, 499
XspI CTAG 1 cut(s) 544
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.