FvH4_6g48801

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000181
Physical Location & Seq
Forward (+)
36678092 .. 36678489
398 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g48801.t1

Sequence Viewer

Length: 291 bp
ATGGATCCGAGACCGACTTTCGGCGGCGCCGCCGGGGCAGCTCCGGCTGGATGTCATGACATCAAACAGGTGCTCTATGAGTCCTCTAAGAAATCAGAGATTTCGGACCAAGAATTACAAGAGATATTTGCAAAGCCGAACATGGGTGCTGATCCTAACAAAAAATTGTCTGAAGAAGATGCCCGAGCCCTAAGGAATATCATGGATGGTTGGAAAGTTAGAGGAGAGGTGCTTAAATTGCCTTCCCAGGAATCCCAAGAGAAGATGTTTATAACGGAATTTGAAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

97

Amino Acids

10.7

Weight (kDa)

5.18

Isoelectric Point (pI)

67.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000181)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 272
AccB1I GGYRCC 1 cut(s) 26
AciI CCGC 2 cut(s) 24, 30
AclWI GGATC 2 cut(s) 12, 146
AcsI RAATTY 1 cut(s) 278
AcuI CTGAAG 1 cut(s) 192
AcyI GRCGYC 1 cut(s) 27
AfiI CCNNNNNNNGG 2 cut(s) 20, 143
AgsI TTSAA 1 cut(s) 284
AjnI CCWGG 1 cut(s) 246
AluBI AGCT 1 cut(s) 41
AluI AGCT 1 cut(s) 41
Alw21I GWGCWC 1 cut(s) 75
Alw26I GTCTC 1 cut(s) 4
AlwI GGATC 2 cut(s) 12, 146
Ama87I CYCGRG 1 cut(s) 183
ApeKI GCWGC 1 cut(s) 38
ApoI RAATTY 1 cut(s) 278
AspLEI GCGC 1 cut(s) 29
AspS9I GGNCC 1 cut(s) 106
AsuC2I CCSGG 1 cut(s) 34
AvaI CYCGRG 1 cut(s) 183
AvaII GGWCC 1 cut(s) 106
AxyI CCTNAGG 1 cut(s) 191
BamHI GGATCC 1 cut(s) 4
BanI GGYRCC 1 cut(s) 26
BanII GRGCYC 1 cut(s) 190
Bbv12I GWGCWC 1 cut(s) 75
BbvI GCAGC 1 cut(s) 50
BccI CCATC 1 cut(s) 200
BciT130I CCWGG 1 cut(s) 248
BcnI CCSGG 1 cut(s) 34
BcoDI GTCTC 1 cut(s) 4
BfoI RGCGCY 1 cut(s) 30
BglI GCCNNNNNGGC 1 cut(s) 35
BisI GCNGC 3 cut(s) 25, 30, 39
BlsI GCNGC 3 cut(s) 26, 31, 40
Bme1390I CCNGG 2 cut(s) 34, 248
Bme18I GGWCC 1 cut(s) 106
BmeT110I CYCGRG 1 cut(s) 183
BmgT120I GGNCC 1 cut(s) 106
BmiI GGNNCC 2 cut(s) 6, 28
BmrFI CCNGG 2 cut(s) 34, 248
BmsI GCATC 1 cut(s) 169
BpuMI CCSGG 1 cut(s) 34
BsaHI GRCGYC 1 cut(s) 27
BsaI GGTCTC 1 cut(s) 4
BsaJI CCNNGG 2 cut(s) 33, 246
Bsc4I CCNNNNNNNGG 2 cut(s) 20, 143
Bse21I CCTNAGG 1 cut(s) 191
BseBI CCWGG 1 cut(s) 248
BseDI CCNNGG 2 cut(s) 33, 246
BseGI GGATG 2 cut(s) 56, 211
BseLI CCNNNNNNNGG 2 cut(s) 20, 143
BseRI GAGGAG 1 cut(s) 237
BseXI GCAGC 1 cut(s) 50
BshNI GGYRCC 1 cut(s) 26
BsiHKAI GWGCWC 1 cut(s) 75
BsiHKCI CYCGRG 1 cut(s) 183
BsiSI CCGG 2 cut(s) 33, 44
BslI CCNNNNNNNGG 2 cut(s) 20, 143
BsmAI GTCTC 1 cut(s) 4
Bso31I GGTCTC 1 cut(s) 4
BsoBI CYCGRG 1 cut(s) 183
Bsp1286I GDGCHC 2 cut(s) 75, 190
Bsp143I GATC 2 cut(s) 4, 151
BspACI CCGC 2 cut(s) 24, 30
BspHI TCATGA 1 cut(s) 55
BspLI GGNNCC 2 cut(s) 6, 28
BspPI GGATC 2 cut(s) 12, 146
BspT107I GGYRCC 1 cut(s) 26
BspTNI GGTCTC 1 cut(s) 4
BssECI CCNNGG 2 cut(s) 33, 246
BssMI GATC 2 cut(s) 4, 151
BssNI GRCGYC 1 cut(s) 27
Bst2UI CCWGG 1 cut(s) 248
BstACI GRCGYC 1 cut(s) 27
BstDEI CTNAG 2 cut(s) 87, 191
BstF5I GGATG 2 cut(s) 56, 211
BstH2I RGCGCY 1 cut(s) 30
BstHHI GCGC 1 cut(s) 29
BstKTI GATC 2 cut(s) 7, 154
BstMAI GTCTC 1 cut(s) 4
BstMBI GATC 2 cut(s) 4, 151
BstMWI GCNNNNNNNGC 4 cut(s) 35, 38, 44, 238
BstNI CCWGG 1 cut(s) 248
BstSCI CCNGG 2 cut(s) 32, 246
BstV1I GCAGC 1 cut(s) 50
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
Bsu36I CCTNAGG 1 cut(s) 191
BtsCI GGATG 2 cut(s) 56, 211
CciI TCATGA 1 cut(s) 55
CfoI GCGC 1 cut(s) 29
Cfr13I GGNCC 1 cut(s) 106
CviAII CATG 3 cut(s) 56, 142, 202
CviJI RGCY 4 cut(s) 41, 47, 136, 188
CviKI_1 RGCY 4 cut(s) 41, 47, 136, 188
DdeI CTNAG 2 cut(s) 87, 191
DinI GGCGCC 1 cut(s) 28
DpnI GATC 2 cut(s) 6, 153
DpnII GATC 2 cut(s) 4, 151
Eco24I GRGCYC 1 cut(s) 190
Eco31I GGTCTC 1 cut(s) 4
Eco47I GGWCC 1 cut(s) 106
Eco57I CTGAAG 1 cut(s) 192
Eco81I CCTNAGG 1 cut(s) 191
Eco88I CYCGRG 1 cut(s) 183
EcoRII CCWGG 1 cut(s) 246
EcoT38I GRGCYC 1 cut(s) 190
EgeI GGCGCC 1 cut(s) 28
EheI GGCGCC 1 cut(s) 28
FaeI CATG 3 cut(s) 59, 145, 205
FaiI YATR 5 cut(s) 57, 78, 143, 203, 272
FatI CATG 3 cut(s) 55, 141, 201
Fnu4HI GCNGC 3 cut(s) 25, 30, 39
FokI GGATG 2 cut(s) 63, 218
FriOI GRGCYC 1 cut(s) 190
Fsp4HI GCNGC 3 cut(s) 25, 30, 39
GlaI GCGC 1 cut(s) 28
GluI GCNGC 3 cut(s) 25, 30, 39
HaeII RGCGCY 1 cut(s) 30
HapII CCGG 2 cut(s) 33, 44
HhaI GCGC 1 cut(s) 29
Hin1I GRCGYC 1 cut(s) 27
Hin1II CATG 3 cut(s) 59, 145, 205
Hin6I GCGC 1 cut(s) 27
HinP1I GCGC 1 cut(s) 27
HinfI GANTC 2 cut(s) 80, 251
HpaII CCGG 2 cut(s) 33, 44
Hpy188I TCNGA 4 cut(s) 9, 97, 106, 172
Hpy188III TCNNGA 1 cut(s) 56
HpyAV CCTTC 1 cut(s) 252
HpyCH4V TGCA 1 cut(s) 131
HpyF10VI GCNNNNNNNGC 4 cut(s) 35, 38, 44, 238
HpyF3I CTNAG 2 cut(s) 87, 191
Hsp92I GRCGYC 1 cut(s) 27
Hsp92II CATG 3 cut(s) 59, 145, 205
HspAI GCGC 1 cut(s) 27
KasI GGCGCC 1 cut(s) 26
Kzo9I GATC 2 cut(s) 4, 151
LmnI GCTCC 1 cut(s) 46
LpnPI CCDG 6 cut(s) 33, 46, 53, 57, 233, 260
Lsp1109I GCAGC 1 cut(s) 50
LweI GCATC 1 cut(s) 169
MalI GATC 2 cut(s) 6, 153
MboI GATC 2 cut(s) 4, 151
MboII GAAGA 3 cut(s) 185, 188, 274
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 2 cut(s) 75, 190
MluCI AATT 4 cut(s) 113, 164, 236, 278
Mly113I GGCGCC 1 cut(s) 27
MlyI GAGTC 1 cut(s) 89
MmeI TCCRAC 1 cut(s) 191
MnlI CCTC 3 cut(s) 94, 215, 220
MseI TTAA 1 cut(s) 234
MspI CCGG 2 cut(s) 33, 44
MspR9I CCNGG 2 cut(s) 34, 248
MvaI CCWGG 1 cut(s) 248
MwoI GCNNNNNNNGC 4 cut(s) 35, 38, 44, 238
NarI GGCGCC 1 cut(s) 27
NciI CCSGG 1 cut(s) 34
NdeII GATC 2 cut(s) 4, 151
NlaIII CATG 3 cut(s) 59, 145, 205
NlaIV GGNNCC 2 cut(s) 6, 28
PagI TCATGA 1 cut(s) 55
PfeI GAWTC 1 cut(s) 251
PkrI GCNGC 3 cut(s) 26, 31, 40
PleI GAGTC 1 cut(s) 88
PluTI GGCGCC 1 cut(s) 30
PpsI GAGTC 1 cut(s) 88
PsiI TTATAA 1 cut(s) 272
Psp6I CCWGG 1 cut(s) 246
PspGI CCWGG 1 cut(s) 246
PspN4I GGNNCC 2 cut(s) 6, 28
PspPI GGNCC 1 cut(s) 106
PsuI RGATCY 1 cut(s) 4
SaqAI TTAA 1 cut(s) 234
SatI GCNGC 3 cut(s) 25, 30, 39
Sau3AI GATC 2 cut(s) 4, 151
Sau96I GGNCC 1 cut(s) 106
SchI GAGTC 1 cut(s) 89
ScrFI CCNGG 2 cut(s) 34, 248
SduI GDGCHC 2 cut(s) 75, 190
SetI ASST 3 cut(s) 43, 72, 231
SfaNI GCATC 1 cut(s) 169
SfoI GGCGCC 1 cut(s) 28
SinI GGWCC 1 cut(s) 106
Sse9I AATT 4 cut(s) 113, 164, 236, 278
SsiI CCGC 2 cut(s) 24, 30
SspDI GGCGCC 1 cut(s) 26
StyD4I CCNGG 2 cut(s) 32, 246
TaqII GACCGA 1 cut(s) 28
TasI AATT 4 cut(s) 113, 164, 236, 278
TauI GCSGC 2 cut(s) 27, 32
TfiI GAWTC 1 cut(s) 251
Tru1I TTAA 1 cut(s) 234
Tru9I TTAA 1 cut(s) 234
TseI GCWGC 1 cut(s) 38
TspGWI ACGGA 1 cut(s) 290
VpaK11BI GGWCC 1 cut(s) 106
XapI RAATTY 1 cut(s) 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.