Rh2BG628900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000181
Physical Location & Seq
Forward (+)
85083373 .. 85083783
411 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG628900.1

Sequence Viewer

Length: 411 bp
ATGTCTCTCGAAATACCAGTCATCTCCGATGGCCGCTCTTCACTGGAGAAGAAGGCCCGATCTGGAGAGATCGATGTGGAAGACCCAGATTCAGACTACTCAGATGGATCAGAAGAAGAAATTAAACATTGTGAAGTTTGTATGAAGGACGAGGAACACTGGTCATATGATTGCCCGTACTTGGACTATATTCCAAACCCGGAGGACACACCTGTTGGCGAGGGCTATACCATAGTTTGCATCCACTGCAATCAGAATCAGTTGAAACATGGCCACCCTGATGGAAGCTGGGTAGGACGTGCAACAAGAAATCCTTTTGATTCGAGTTTGATAATTAAAAAGCCTGGTGTGACATATCACGAGTGTGATGATGACGATGAAGTATATCTTGATTGGGAGAGTACTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

136

Amino Acids

15.45

Weight (kDa)

4.3

Isoelectric Point (pI)

47.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000181)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 36
AciI CCGC 1 cut(s) 34
AclWI GGATC 1 cut(s) 115
AcoI YGGCCR 2 cut(s) 31, 271
AfaI GTAC 2 cut(s) 179, 403
AfiI CCNNNNNNNGG 1 cut(s) 181
AgsI TTSAA 1 cut(s) 265
AjiI CACGTC 1 cut(s) 299
AjnI CCWGG 1 cut(s) 343
AleI CACNNNNGTG 1 cut(s) 363
AluBI AGCT 1 cut(s) 288
AluI AGCT 1 cut(s) 288
Alw26I GTCTC 1 cut(s) 9
AlwI GGATC 1 cut(s) 115
AoxI GGCC 3 cut(s) 31, 54, 271
ArsI GACNNNNNNTTYG 1 cut(s) 35
AspS9I GGNCC 1 cut(s) 55
AsuC2I CCSGG 1 cut(s) 200
BalI TGGCCA 1 cut(s) 273
BauI CACGAG 1 cut(s) 359
BbsI GAAGAC 1 cut(s) 87
BccI CCATC 3 cut(s) 23, 98, 275
BciT130I CCWGG 1 cut(s) 345
BcnI CCSGG 1 cut(s) 200
BcoDI GTCTC 1 cut(s) 9
BisI GCNGC 1 cut(s) 34
BlsI GCNGC 1 cut(s) 35
BmcAI AGTACT 1 cut(s) 403
Bme1390I CCNGG 2 cut(s) 200, 345
BmgBI CACGTC 1 cut(s) 299
BmgT120I GGNCC 1 cut(s) 55
BmrFI CCNGG 2 cut(s) 200, 345
BmsI GCATC 1 cut(s) 249
BpiI GAAGAC 1 cut(s) 87
BpmI CTGGAG 2 cut(s) 65, 84
BpuMI CCSGG 1 cut(s) 200
Bsa29I ATCGAT 1 cut(s) 72
Bsc4I CCNNNNNNNGG 1 cut(s) 181
Bse1I ACTGG 3 cut(s) 17, 48, 164
BseBI CCWGG 1 cut(s) 345
BseCI ATCGAT 1 cut(s) 72
BseGI GGATG 1 cut(s) 240
BseLI CCNNNNNNNGG 1 cut(s) 181
BseMII CTCAG 1 cut(s) 114
BseNI ACTGG 3 cut(s) 17, 48, 164
BseYI CCCAGC 1 cut(s) 288
BshFI GGCC 3 cut(s) 33, 56, 273
BshVI ATCGAT 1 cut(s) 72
BsiSI CCGG 1 cut(s) 200
BslI CCNNNNNNNGG 1 cut(s) 181
BsmAI GTCTC 1 cut(s) 9
BsnI GGCC 3 cut(s) 33, 56, 273
Bsp143I GATC 3 cut(s) 59, 69, 107
BspACI CCGC 1 cut(s) 34
BspANI GGCC 3 cut(s) 33, 56, 273
BspCNI CTCAG 1 cut(s) 113
BspDI ATCGAT 1 cut(s) 72
BspPI GGATC 1 cut(s) 115
BspQI GCTCTTC 1 cut(s) 43
BsrBI CCGCTC 1 cut(s) 36
BsrI ACTGG 3 cut(s) 17, 48, 164
BssMI GATC 3 cut(s) 59, 69, 107
BssSI CACGAG 1 cut(s) 359
Bst2BI CACGAG 1 cut(s) 359
Bst2UI CCWGG 1 cut(s) 345
Bst4CI ACNGT 1 cut(s) 406
Bst6I CTCTTC 1 cut(s) 43
BstAPI GCANNNNNTGC 1 cut(s) 246
BstDEI CTNAG 1 cut(s) 100
BstF5I GGATG 1 cut(s) 240
BstKTI GATC 3 cut(s) 62, 72, 110
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 3 cut(s) 59, 69, 107
BstMWI GCNNNNNNNGC 1 cut(s) 246
BstNI CCWGG 1 cut(s) 345
BstSCI CCNGG 2 cut(s) 198, 343
BstV2I GAAGAC 1 cut(s) 87
BstXI CCANNNNNNTGG 1 cut(s) 281
Bsu15I ATCGAT 1 cut(s) 72
BsuRI GGCC 3 cut(s) 33, 56, 273
BsuTUI ATCGAT 1 cut(s) 72
BtrI CACGTC 1 cut(s) 299
BtsCI GGATG 1 cut(s) 240
BtsI GCAGTG 1 cut(s) 244
BtsIMutI CAGTG 3 cut(s) 41, 157, 244
Cfr13I GGNCC 1 cut(s) 55
ClaI ATCGAT 1 cut(s) 72
Csp6I GTAC 2 cut(s) 178, 402
CviAII CATG 1 cut(s) 269
CviJI RGCY 6 cut(s) 33, 56, 225, 273, 288, 343
CviKI_1 RGCY 6 cut(s) 33, 56, 225, 273, 288, 343
CviQI GTAC 2 cut(s) 178, 402
DdeI CTNAG 1 cut(s) 100
DpnI GATC 3 cut(s) 61, 71, 109
DpnII GATC 3 cut(s) 59, 69, 107
EaeI YGGCCR 2 cut(s) 31, 271
Eam1104I CTCTTC 1 cut(s) 43
EarI CTCTTC 1 cut(s) 43
EcoRII CCWGG 1 cut(s) 343
FaeI CATG 1 cut(s) 272
FaiI YATR 9 cut(s) 143, 166, 168, 189, 228, 233, 270, 355, 385
FalI AAGNNNNNCTT 4 cut(s) 298, 330, 372, 404
FatI CATG 1 cut(s) 268
FauNDI CATATG 1 cut(s) 166
Fnu4HI GCNGC 1 cut(s) 34
FokI GGATG 1 cut(s) 227
Fsp4HI GCNGC 1 cut(s) 34
GluI GCNGC 1 cut(s) 34
GsaI CCCAGC 1 cut(s) 292
GsuI CTGGAG 2 cut(s) 65, 84
HaeIII GGCC 3 cut(s) 33, 56, 273
HapII CCGG 1 cut(s) 200
Hin1II CATG 1 cut(s) 272
HinfI GANTC 3 cut(s) 89, 256, 320
HpaII CCGG 1 cut(s) 200
Hpy188I TCNGA 5 cut(s) 28, 94, 103, 112, 255
Hpy188III TCNNGA 4 cut(s) 8, 63, 359, 389
HpyAV CCTTC 2 cut(s) 46, 139
HpyCH4III ACNGT 1 cut(s) 406
HpyCH4IV ACGT 1 cut(s) 298
HpyCH4V TGCA 3 cut(s) 240, 249, 302
HpyF10VI GCNNNNNNNGC 1 cut(s) 246
HpyF3I CTNAG 1 cut(s) 100
HpySE526I ACGT 1 cut(s) 298
Hsp92II CATG 1 cut(s) 272
Kzo9I GATC 3 cut(s) 59, 69, 107
LguI GCTCTTC 1 cut(s) 43
LweI GCATC 1 cut(s) 249
MaeII ACGT 1 cut(s) 298
MaeIII GTNAC 1 cut(s) 349
MalI GATC 3 cut(s) 61, 71, 109
MbiI CCGCTC 1 cut(s) 36
MboI GATC 3 cut(s) 59, 69, 107
MboII GAAGA 5 cut(s) 30, 61, 92, 125, 128
MlsI TGGCCA 1 cut(s) 273
MluCI AATT 2 cut(s) 120, 333
MluNI TGGCCA 1 cut(s) 273
MnlI CCTC 3 cut(s) 145, 196, 214
Mox20I TGGCCA 1 cut(s) 273
MscI TGGCCA 1 cut(s) 273
MseI TTAA 2 cut(s) 123, 336
MslI CAYNNNNRTG 2 cut(s) 279, 363
Msp20I TGGCCA 1 cut(s) 273
MspI CCGG 1 cut(s) 200
MspR9I CCNGG 2 cut(s) 200, 345
MvaI CCWGG 1 cut(s) 345
MwoI GCNNNNNNNGC 1 cut(s) 246
NciI CCSGG 1 cut(s) 200
NdeI CATATG 1 cut(s) 166
NdeII GATC 3 cut(s) 59, 69, 107
NlaIII CATG 1 cut(s) 272
NmuCI GTSAC 1 cut(s) 349
OliI CACNNNNGTG 1 cut(s) 363
PciSI GCTCTTC 1 cut(s) 43
PfeI GAWTC 3 cut(s) 89, 256, 320
PkrI GCNGC 1 cut(s) 35
Psp6I CCWGG 1 cut(s) 343
PspFI CCCAGC 1 cut(s) 288
PspGI CCWGG 1 cut(s) 343
PspPI GGNCC 1 cut(s) 55
RsaI GTAC 2 cut(s) 179, 403
RsaNI GTAC 2 cut(s) 178, 402
RseI CAYNNNNRTG 2 cut(s) 279, 363
SapI GCTCTTC 1 cut(s) 43
SaqAI TTAA 2 cut(s) 123, 336
SatI GCNGC 1 cut(s) 34
Sau3AI GATC 3 cut(s) 59, 69, 107
Sau96I GGNCC 1 cut(s) 55
ScaI AGTACT 1 cut(s) 403
ScrFI CCNGG 2 cut(s) 200, 345
SetI ASST 3 cut(s) 214, 290, 301
SfaNI GCATC 1 cut(s) 249
SmiMI CAYNNNNRTG 2 cut(s) 279, 363
Sse9I AATT 2 cut(s) 120, 333
SsiI CCGC 1 cut(s) 34
StyD4I CCNGG 2 cut(s) 198, 343
TaaI ACNGT 1 cut(s) 406
TaiI ACGT 1 cut(s) 301
TaqI TCGA 3 cut(s) 9, 72, 323
TasI AATT 2 cut(s) 120, 333
TatI WGTACW 1 cut(s) 401
TauI GCSGC 1 cut(s) 36
TfiI GAWTC 3 cut(s) 89, 256, 320
Tru1I TTAA 2 cut(s) 123, 336
Tru9I TTAA 2 cut(s) 123, 336
TscAI CASTG 3 cut(s) 48, 164, 251
TseFI GTSAC 1 cut(s) 349
Tsp45I GTSAC 1 cut(s) 349
TspDTI ATGAA 2 cut(s) 158, 393
TspRI CASTG 3 cut(s) 48, 164, 251
ZrmI AGTACT 1 cut(s) 403
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.