pycom07g27750

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0000181
Physical Location & Seq
Forward (+)
27348426 .. 27349018
593 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g27750.1

Sequence Viewer

Length: 489 bp
ATGCAATCACAAATAACAAAATCCCAATATGGTATCAGATATAACAAACAGCCTGGCACCAACGTGGCGTTTGTTCATCCTCTCCACGCCAAGTTTGTCATATGCCTCAACTCGTCGGTAATCTTCACAAGCTCAACCGTAGGCTTATTCTCACGTGCAATTGGAAGGTCTAAAACTGTTTATCTTGTGTGGGTTGATGCATCTTTTGATGAAATGAAAAGGGATCAACTCCTAATCAAAGATGGACGTTATTTTTGTGAAGTCTGTCTTAAGGAAGGCAACCACTTGGATTGCGATTGCCCCAACTTTGTTTTGATCCCCAAGGGCGCTAAAATTGGCACTGGCTATGACATTGTTTGTGCCGACTGTGGCAAAGACCATCAGAACGACTCTGACCACGACTCTGGTGTTTTAGACGAGGACTGGCTAGGACGTGCTATTAGGAAGGTTTGTGATATTTGCGGGGGGGAATATGGCCATTGGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

163

Amino Acids

18.13

Weight (kDa)

6.28

Isoelectric Point (pI)

24.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000181)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 56
AciI CCGC 1 cut(s) 462
AclWI GGATC 2 cut(s) 231, 310
AcoI YGGCCR 1 cut(s) 475
AcvI CACGTG 1 cut(s) 155
AflII CTTAAG 1 cut(s) 269
AjiI CACGTC 1 cut(s) 434
AjnI CCWGG 1 cut(s) 52
AleI CACNNNNGTG 1 cut(s) 62
AluBI AGCT 1 cut(s) 132
AluI AGCT 1 cut(s) 132
AlwI GGATC 2 cut(s) 231, 310
AoxI GGCC 1 cut(s) 475
ArsI GACNNNNNNTTYG 2 cut(s) 237, 269
AspLEI GCGC 1 cut(s) 329
BalI TGGCCA 1 cut(s) 477
BanI GGYRCC 1 cut(s) 56
BbrPI CACGTG 1 cut(s) 155
BccI CCATC 2 cut(s) 236, 387
BciT130I CCWGG 1 cut(s) 54
BfaI CTAG 1 cut(s) 428
BfoI RGCGCY 1 cut(s) 330
BfrI CTTAAG 1 cut(s) 269
Bme1390I CCNGG 1 cut(s) 54
BmgBI CACGTC 1 cut(s) 434
BmiI GGNNCC 1 cut(s) 58
BmrFI CCNGG 1 cut(s) 54
BmsI GCATC 2 cut(s) 187, 209
BsaAI YACGTR 1 cut(s) 155
BsaJI CCNNGG 1 cut(s) 321
Bse1I ACTGG 2 cut(s) 346, 428
BseBI CCWGG 1 cut(s) 54
BseDI CCNNGG 1 cut(s) 321
BseGI GGATG 1 cut(s) 76
BseNI ACTGG 2 cut(s) 346, 428
BshFI GGCC 1 cut(s) 477
BshNI GGYRCC 1 cut(s) 56
BsnI GGCC 1 cut(s) 477
Bsp143I GATC 2 cut(s) 223, 315
BspACI CCGC 1 cut(s) 462
BspANI GGCC 1 cut(s) 477
BspLI GGNNCC 1 cut(s) 58
BspPI GGATC 2 cut(s) 231, 310
BspT107I GGYRCC 1 cut(s) 56
BspTI CTTAAG 1 cut(s) 269
BsrI ACTGG 2 cut(s) 346, 428
BssECI CCNNGG 1 cut(s) 321
BssMI GATC 2 cut(s) 223, 315
BssT1I CCWWGG 1 cut(s) 321
Bst2UI CCWGG 1 cut(s) 54
Bst4CI ACNGT 3 cut(s) 139, 178, 368
BstAFI CTTAAG 1 cut(s) 269
BstBAI YACGTR 1 cut(s) 155
BstF5I GGATG 1 cut(s) 76
BstH2I RGCGCY 1 cut(s) 330
BstHHI GCGC 1 cut(s) 329
BstKTI GATC 2 cut(s) 226, 318
BstMBI GATC 2 cut(s) 223, 315
BstNI CCWGG 1 cut(s) 54
BstSCI CCNGG 1 cut(s) 52
BstXI CCANNNNNNTGG 1 cut(s) 404
BsuRI GGCC 1 cut(s) 477
BtrI CACGTC 1 cut(s) 434
BtsCI GGATG 1 cut(s) 76
BtsIMutI CAGTG 1 cut(s) 339
CfoI GCGC 1 cut(s) 329
CspCI CAANNNNNGTGG 2 cut(s) 272, 307
CviJI RGCY 6 cut(s) 52, 132, 144, 345, 427, 477
CviKI_1 RGCY 6 cut(s) 52, 132, 144, 345, 427, 477
DpnI GATC 2 cut(s) 225, 317
DpnII GATC 2 cut(s) 223, 315
EaeI YGGCCR 1 cut(s) 475
Eco130I CCWWGG 1 cut(s) 321
Eco72I CACGTG 1 cut(s) 155
EcoRII CCWGG 1 cut(s) 52
EcoT14I CCWWGG 1 cut(s) 321
EcoT22I ATGCAT 1 cut(s) 202
ErhI CCWWGG 1 cut(s) 321
FaiI YATR 6 cut(s) 30, 42, 101, 103, 348, 474
FalI AAGNNNNNCTT 2 cut(s) 252, 284
FauI CCCGC 1 cut(s) 455
FauNDI CATATG 1 cut(s) 101
FokI GGATG 1 cut(s) 63
FspBI CTAG 1 cut(s) 428
GlaI GCGC 1 cut(s) 328
HaeII RGCGCY 1 cut(s) 330
HaeIII GGCC 1 cut(s) 477
HhaI GCGC 1 cut(s) 329
Hin6I GCGC 1 cut(s) 327
HinP1I GCGC 1 cut(s) 327
HinfI GANTC 2 cut(s) 389, 401
Hpy188I TCNGA 3 cut(s) 38, 384, 394
Hpy99I CGWCG 1 cut(s) 118
HpyAV CCTTC 3 cut(s) 159, 269, 439
HpyCH4III ACNGT 3 cut(s) 139, 178, 368
HpyCH4IV ACGT 4 cut(s) 63, 154, 247, 433
HpyCH4V TGCA 3 cut(s) 4, 158, 200
HpySE526I ACGT 4 cut(s) 63, 154, 247, 433
HspAI GCGC 1 cut(s) 327
Kzo9I GATC 2 cut(s) 223, 315
LpnPI CCDG 5 cut(s) 39, 66, 327, 390, 409
LweI GCATC 2 cut(s) 187, 209
MaeI CTAG 1 cut(s) 428
MaeII ACGT 4 cut(s) 63, 154, 247, 433
MalI GATC 2 cut(s) 225, 317
MboI GATC 2 cut(s) 223, 315
MboII GAAGA 1 cut(s) 115
MfeI CAATTG 1 cut(s) 159
MlsI TGGCCA 1 cut(s) 477
MluCI AATT 2 cut(s) 159, 333
MluNI TGGCCA 1 cut(s) 477
MlyI GAGTC 2 cut(s) 383, 395
MnlI CCTC 3 cut(s) 90, 116, 412
Mox20I TGGCCA 1 cut(s) 477
Mph1103I ATGCAT 1 cut(s) 202
MscI TGGCCA 1 cut(s) 477
MseI TTAA 1 cut(s) 270
MslI CAYNNNNRTG 1 cut(s) 62
Msp20I TGGCCA 1 cut(s) 477
MspCI CTTAAG 1 cut(s) 269
MspR9I CCNGG 1 cut(s) 54
MunI CAATTG 1 cut(s) 159
MvaI CCWGG 1 cut(s) 54
NdeI CATATG 1 cut(s) 101
NdeII GATC 2 cut(s) 223, 315
NlaIV GGNNCC 1 cut(s) 58
NsiI ATGCAT 1 cut(s) 202
OliI CACNNNNGTG 1 cut(s) 62
PleI GAGTC 2 cut(s) 383, 395
PmaCI CACGTG 1 cut(s) 155
PmlI CACGTG 1 cut(s) 155
PpsI GAGTC 2 cut(s) 383, 395
Ppu21I YACGTR 1 cut(s) 155
Psp6I CCWGG 1 cut(s) 52
PspCI CACGTG 1 cut(s) 155
PspGI CCWGG 1 cut(s) 52
PspN4I GGNNCC 1 cut(s) 58
RseI CAYNNNNRTG 1 cut(s) 62
SaqAI TTAA 1 cut(s) 270
Sau3AI GATC 2 cut(s) 223, 315
SchI GAGTC 2 cut(s) 383, 395
ScrFI CCNGG 1 cut(s) 54
SetI ASST 7 cut(s) 66, 134, 157, 170, 250, 436, 450
SfaNI GCATC 2 cut(s) 187, 209
SmiMI CAYNNNNRTG 1 cut(s) 62
SmlI CTYRAG 1 cut(s) 269
SmoI CTYRAG 1 cut(s) 269
Sse9I AATT 2 cut(s) 159, 333
SsiI CCGC 1 cut(s) 462
SspMI CTAG 1 cut(s) 428
StyD4I CCNGG 1 cut(s) 52
StyI CCWWGG 1 cut(s) 321
TaaI ACNGT 3 cut(s) 139, 178, 368
TaiI ACGT 4 cut(s) 66, 157, 250, 436
TasI AATT 2 cut(s) 159, 333
Tru1I TTAA 1 cut(s) 270
Tru9I TTAA 1 cut(s) 270
TscAI CASTG 1 cut(s) 346
TspDTI ATGAA 3 cut(s) 65, 225, 230
TspRI CASTG 1 cut(s) 346
Vha464I CTTAAG 1 cut(s) 269
XspI CTAG 1 cut(s) 428
Zsp2I ATGCAT 1 cut(s) 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.