MD05G1007600.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0000181
Physical Location & Seq
Reverse (-)
1790457 .. 1791581
1125 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1007600.v1.1.491

Sequence Viewer

Length: 585 bp
ATGATCTGCCGGACTTTGAGATCCGCTCCCGTGGTCGGCCGCGTACAGGAATGCGTTGCCATGTTCCGCCGCGCAATCGGTGGAGAAGTAGAAGCCCACGCGAAAGCCAAGTCAGAATCGGTTCAGGGGCATAATCGAAAGAAGAAAGGGCACAAGGACTTGGAAGCAGAATTAGCAGCAGCAAAACTTAGATATGGTCCTTGTGGAGTTTGTGGAAAGGACAAAGACCACACGAGTGCTGGTTGCCCTTACGTGATAAATATCCCAAACCCTCTGGAGGTAACTCTTGTTGACGGTAGGTATGGAATAGTTTGTGATTGTTGTGCTCAGCCGGGGGGCCACCCTACTCGCCGGGGCTGGACAGGACGTGCTACTCTCAAGTTGTGTACCTATTGTATGGTATTGGGTGAGCACTGGACTACAGATTGCCCGTGCGTTGAGCCCCAACAACGTGAGAAATGGAGAAAAGAAATGAGAGAGGATGATATTTTGGGAGAGGAGCCCAAGAAAGAAGAATTTCTGGACTTAGAGGCATATTTGAGGGACTTGCGAATGATGGCTGAGTTAAAACCATATGACGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

195

Amino Acids

21.78

Weight (kDa)

7.95

Isoelectric Point (pI)

39.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000181)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 26
AccII CGCG 3 cut(s) 42, 72, 101
AciI CCGC 4 cut(s) 24, 40, 67, 70
AclWI GGATC 1 cut(s) 15
AcoI YGGCCR 1 cut(s) 37
AcsI RAATTY 1 cut(s) 515
AfaI GTAC 2 cut(s) 45, 388
AfiI CCNNNNNNNGG 4 cut(s) 35, 46, 277, 578
AjiI CACGTC 1 cut(s) 368
AleI CACNNNNGTG 1 cut(s) 234
Alw21I GWGCWC 2 cut(s) 328, 414
AlwI GGATC 1 cut(s) 15
AoxI GGCC 2 cut(s) 37, 337
ApeKI GCWGC 2 cut(s) 176, 179
ApoI RAATTY 1 cut(s) 515
ArsI GACNNNNNNTTYG 2 cut(s) 95, 127
Asp700I GAANNNNTTC 2 cut(s) 120, 516
AspLEI GCGC 1 cut(s) 74
AspS9I GGNCC 2 cut(s) 197, 337
AsuC2I CCSGG 2 cut(s) 333, 353
AsuHPI GGTGA 1 cut(s) 419
AvaII GGWCC 1 cut(s) 197
BaeGI GKGCMC 1 cut(s) 153
BanII GRGCYC 2 cut(s) 444, 504
BauI CACGAG 1 cut(s) 232
Bbv12I GWGCWC 2 cut(s) 328, 414
BbvI GCAGC 2 cut(s) 188, 191
BccI CCATC 1 cut(s) 550
BcnI CCSGG 2 cut(s) 333, 353
BfmI CTRYAG 1 cut(s) 420
BisI GCNGC 4 cut(s) 40, 70, 177, 180
BlpI GCTNAGC 1 cut(s) 327
BlsI GCNGC 4 cut(s) 41, 71, 178, 181
Bme1390I CCNGG 2 cut(s) 333, 353
Bme18I GGWCC 1 cut(s) 197
BmgBI CACGTC 1 cut(s) 368
BmgT120I GGNCC 2 cut(s) 197, 337
BmiI GGNNCC 2 cut(s) 338, 501
BmrFI CCNGG 2 cut(s) 333, 353
BplI GAGNNNNNCTC 2 cut(s) 10, 42
BpmI CTGGAG 1 cut(s) 296
Bpu1102I GCTNAGC 1 cut(s) 327
BpuEI CTTGAG 1 cut(s) 362
BpuMI CCSGG 2 cut(s) 333, 353
BsaAI YACGTR 1 cut(s) 253
BsaBI GATNNNNATC 1 cut(s) 260
BsaJI CCNNGG 3 cut(s) 30, 332, 352
Bsc4I CCNNNNNNNGG 4 cut(s) 35, 46, 277, 578
Bse1I ACTGG 1 cut(s) 419
Bse8I GATNNNNATC 1 cut(s) 260
BseDI CCNNGG 3 cut(s) 30, 332, 352
BseGI GGATG 1 cut(s) 487
BseJI GATNNNNATC 1 cut(s) 260
BseLI CCNNNNNNNGG 4 cut(s) 35, 46, 277, 578
BseMII CTCAG 2 cut(s) 341, 552
BseNI ACTGG 1 cut(s) 419
BseRI GAGGAG 1 cut(s) 512
BseSI GKGCMC 1 cut(s) 153
BseX3I CGGCCG 1 cut(s) 37
BseXI GCAGC 2 cut(s) 188, 191
Bsh1236I CGCG 3 cut(s) 42, 72, 101
Bsh1285I CGRYCG 1 cut(s) 40
BshFI GGCC 2 cut(s) 39, 339
BsiEI CGRYCG 1 cut(s) 40
BsiHKAI GWGCWC 2 cut(s) 328, 414
BsiSI CCGG 3 cut(s) 10, 332, 352
BslFI GGGAC 1 cut(s) 557
BslI CCNNNNNNNGG 4 cut(s) 35, 46, 277, 578
BsmFI GGGAC 1 cut(s) 557
BsmI GAATGC 1 cut(s) 56
BsnI GGCC 2 cut(s) 39, 339
Bsp1286I GDGCHC 5 cut(s) 153, 328, 414, 444, 504
Bsp143I GATC 2 cut(s) 3, 20
Bsp1720I GCTNAGC 1 cut(s) 327
BspACI CCGC 4 cut(s) 24, 40, 67, 70
BspANI GGCC 2 cut(s) 39, 339
BspCNI CTCAG 2 cut(s) 340, 553
BspFNI CGCG 3 cut(s) 42, 72, 101
BspLI GGNNCC 2 cut(s) 338, 501
BspPI GGATC 1 cut(s) 15
BsrBI CCGCTC 1 cut(s) 26
BsrI ACTGG 1 cut(s) 419
BssECI CCNNGG 3 cut(s) 30, 332, 352
BssMI GATC 2 cut(s) 3, 20
BssSI CACGAG 1 cut(s) 232
Bst2BI CACGAG 1 cut(s) 232
Bst4CI ACNGT 2 cut(s) 296, 581
BstBAI YACGTR 1 cut(s) 253
BstDEI CTNAG 4 cut(s) 188, 327, 526, 561
BstDSI CCRYGG 1 cut(s) 30
BstF5I GGATG 1 cut(s) 487
BstFNI CGCG 3 cut(s) 42, 72, 101
BstHHI GCGC 1 cut(s) 74
BstKTI GATC 2 cut(s) 6, 23
BstMBI GATC 2 cut(s) 3, 20
BstMCI CGRYCG 1 cut(s) 40
BstMWI GCNNNNNNNGC 1 cut(s) 173
BstSCI CCNGG 2 cut(s) 331, 351
BstSFI CTRYAG 1 cut(s) 420
BstSLI GKGCMC 1 cut(s) 153
BstUI CGCG 3 cut(s) 42, 72, 101
BstV1I GCAGC 2 cut(s) 188, 191
BstX2I RGATCY 1 cut(s) 20
BstYI RGATCY 1 cut(s) 20
BstZI CGGCCG 1 cut(s) 37
BsuRI GGCC 2 cut(s) 39, 339
BtgI CCRYGG 1 cut(s) 30
BtrI CACGTC 1 cut(s) 368
BtsCI GGATG 1 cut(s) 487
BtsIMutI CAGTG 1 cut(s) 412
CfoI GCGC 1 cut(s) 74
Cfr13I GGNCC 2 cut(s) 197, 337
Csp6I GTAC 2 cut(s) 44, 387
CviAII CATG 1 cut(s) 61
CviJI RGCY 9 cut(s) 39, 95, 107, 331, 339, 357, 442, 502, 560
CviKI_1 RGCY 9 cut(s) 39, 95, 107, 331, 339, 357, 442, 502, 560
CviQI GTAC 2 cut(s) 44, 387
DdeI CTNAG 4 cut(s) 188, 327, 526, 561
DpnI GATC 2 cut(s) 5, 22
DpnII GATC 2 cut(s) 3, 20
EaeI YGGCCR 1 cut(s) 37
EagI CGGCCG 1 cut(s) 37
EciI GGCGGA 1 cut(s) 56
EclXI CGGCCG 1 cut(s) 37
Eco24I GRGCYC 2 cut(s) 444, 504
Eco47I GGWCC 1 cut(s) 197
Eco52I CGGCCG 1 cut(s) 37
EcoT38I GRGCYC 2 cut(s) 444, 504
FaeI CATG 1 cut(s) 64
FaiI YATR 8 cut(s) 62, 132, 195, 303, 398, 535, 574, 576
FaqI GGGAC 1 cut(s) 557
FatI CATG 1 cut(s) 60
FauNDI CATATG 1 cut(s) 574
Fnu4HI GCNGC 4 cut(s) 40, 70, 177, 180
FokI GGATG 1 cut(s) 494
FriOI GRGCYC 2 cut(s) 444, 504
Fsp4HI GCNGC 4 cut(s) 40, 70, 177, 180
GlaI GCGC 1 cut(s) 73
GluI GCNGC 4 cut(s) 40, 70, 177, 180
GsuI CTGGAG 1 cut(s) 296
HaeIII GGCC 2 cut(s) 39, 339
HapII CCGG 3 cut(s) 10, 332, 352
HhaI GCGC 1 cut(s) 74
Hin1II CATG 1 cut(s) 64
Hin6I GCGC 1 cut(s) 72
HinP1I GCGC 1 cut(s) 72
HincII GTYRAC 1 cut(s) 292
HindII GTYRAC 1 cut(s) 292
HinfI GANTC 1 cut(s) 116
HpaII CCGG 3 cut(s) 10, 332, 352
HphI GGTGA 1 cut(s) 419
Hpy166II GTNNAC 2 cut(s) 292, 387
Hpy188I TCNGA 1 cut(s) 115
Hpy188III TCNNGA 2 cut(s) 275, 521
Hpy8I GTNNAC 2 cut(s) 292, 387
HpyCH4III ACNGT 2 cut(s) 296, 581
HpyCH4IV ACGT 3 cut(s) 252, 367, 451
HpyF10VI GCNNNNNNNGC 1 cut(s) 173
HpyF3I CTNAG 4 cut(s) 188, 327, 526, 561
HpySE526I ACGT 3 cut(s) 252, 367, 451
Hsp92II CATG 1 cut(s) 64
HspAI GCGC 1 cut(s) 72
Kzo9I GATC 2 cut(s) 3, 20
LmnI GCTCC 2 cut(s) 31, 499
Lsp1109I GCAGC 2 cut(s) 188, 191
MaeII ACGT 3 cut(s) 252, 367, 451
MaeIII GTNAC 1 cut(s) 280
MalI GATC 2 cut(s) 5, 22
MbiI CCGCTC 1 cut(s) 26
MboI GATC 2 cut(s) 3, 20
MboII GAAGA 2 cut(s) 154, 524
MflI RGATCY 1 cut(s) 20
MhlI GDGCHC 5 cut(s) 153, 328, 414, 444, 504
MluCI AATT 2 cut(s) 170, 515
MnlI CCTC 6 cut(s) 271, 282, 472, 490, 523, 534
MroXI GAANNNNTTC 2 cut(s) 120, 516
MseI TTAA 1 cut(s) 566
MslI CAYNNNNRTG 1 cut(s) 234
MspI CCGG 3 cut(s) 10, 332, 352
MspR9I CCNGG 2 cut(s) 333, 353
Mva1269I GAATGC 1 cut(s) 56
MvnI CGCG 3 cut(s) 42, 72, 101
MwoI GCNNNNNNNGC 1 cut(s) 173
NciI CCSGG 2 cut(s) 333, 353
NdeI CATATG 1 cut(s) 574
NdeII GATC 2 cut(s) 3, 20
NlaIII CATG 1 cut(s) 64
NlaIV GGNNCC 2 cut(s) 338, 501
OliI CACNNNNGTG 1 cut(s) 234
PctI GAATGC 1 cut(s) 56
PdmI GAANNNNTTC 2 cut(s) 120, 516
PfeI GAWTC 1 cut(s) 116
PkrI GCNGC 4 cut(s) 41, 71, 178, 181
Ppu21I YACGTR 1 cut(s) 253
PspN4I GGNNCC 2 cut(s) 338, 501
PspPI GGNCC 2 cut(s) 197, 337
PsuI RGATCY 1 cut(s) 20
RsaI GTAC 2 cut(s) 45, 388
RsaNI GTAC 2 cut(s) 44, 387
RseI CAYNNNNRTG 1 cut(s) 234
SaqAI TTAA 1 cut(s) 566
SatI GCNGC 4 cut(s) 40, 70, 177, 180
Sau3AI GATC 2 cut(s) 3, 20
Sau96I GGNCC 2 cut(s) 197, 337
ScrFI CCNGG 2 cut(s) 333, 353
SduI GDGCHC 5 cut(s) 153, 328, 414, 444, 504
SetI ASST 6 cut(s) 255, 282, 302, 370, 392, 454
SfcI CTRYAG 1 cut(s) 420
SinI GGWCC 1 cut(s) 197
SmiMI CAYNNNNRTG 1 cut(s) 234
SmlI CTYRAG 1 cut(s) 377
SmoI CTYRAG 1 cut(s) 377
Sse9I AATT 2 cut(s) 170, 515
SsiI CCGC 4 cut(s) 24, 40, 67, 70
StyD4I CCNGG 2 cut(s) 331, 351
TaaI ACNGT 2 cut(s) 296, 581
TaiI ACGT 3 cut(s) 255, 370, 454
TaqI TCGA 1 cut(s) 136
TasI AATT 2 cut(s) 170, 515
TauI GCSGC 2 cut(s) 42, 72
TfiI GAWTC 1 cut(s) 116
Tru1I TTAA 1 cut(s) 566
Tru9I TTAA 1 cut(s) 566
TscAI CASTG 1 cut(s) 419
TseI GCWGC 2 cut(s) 176, 179
TspRI CASTG 1 cut(s) 419
VpaK11BI GGWCC 1 cut(s) 197
XapI RAATTY 1 cut(s) 515
XcmI CCANNNNNNNNNTGG 1 cut(s) 236
XmnI GAANNNNTTC 2 cut(s) 120, 516
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.