Rroxscaffold_1G00063310

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000181
Physical Location & Seq
Reverse (-)
85198707 .. 85202415
3709 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00063310.1

Sequence Viewer

Length: 558 bp
ATGTCTCTGTGCGACGAAAACAACGTGACGGACCTCTCTGCTTTCCGATTGGCGGTGCAAGGCGCCTTCAACCCCGATAGTGCCAAGTTTGTGCCTACCCTCAGGCCATGTGAACCTGGTGCTTTAGATCGTGTGTCACTCCGCCTTCGTATGGCAAACACTGGCGGTTCTCCTGGTCCTCTTATGTCAGACAGGCCTCAAAGGAGGGTATACTTAGGCGGCTCTCCTGATGGGGCAGAAGGTGGATGTTTGATTTGTTCCTTGGATGAACACCCTTCATCTGTATGTCCGTACAAGGCTCAAATCCCAAAGAACGCAACTGTTGGCAGGGGTTGCGACGTAGTTTGTAAGGTTTGTGATGGTTTGTTTTCAGGGCGTTGTTGTAATCAAGATTCAGGGCGTGCTAGGCTCAAGTTTTGTAATGGCTGTTTAAAGTATGGCGAACACTGGTTACATGAGTGCCCTCAGAAGTCTGTTGTTATGATGCTCGGTCCTCCTAGTTACTTAACTGCACCTGATCCTAGCGCTGGATATTTGAGGAAAGAAAGTGTTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

185

Amino Acids

19.87

Weight (kDa)

8.22

Isoelectric Point (pI)

44.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000181)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 62
AccI GTMKAC 1 cut(s) 210
AciI CCGC 4 cut(s) 53, 142, 165, 219
AclWI GGATC 1 cut(s) 512
AcyI GRCGYC 1 cut(s) 63
AfaI GTAC 1 cut(s) 293
AfeI AGCGCT 1 cut(s) 526
AfiI CCNNNNNNNGG 3 cut(s) 52, 151, 527
AgsI TTSAA 1 cut(s) 70
AjnI CCWGG 2 cut(s) 115, 172
Alw26I GTCTC 1 cut(s) 9
AlwI GGATC 1 cut(s) 512
Aor51HI AGCGCT 1 cut(s) 526
AoxI GGCC 2 cut(s) 104, 194
AspLEI GCGC 2 cut(s) 65, 527
AspS9I GGNCC 3 cut(s) 31, 176, 491
AvaII GGWCC 3 cut(s) 31, 176, 491
AxyI CCTNAGG 1 cut(s) 101
BaeGI GKGCMC 1 cut(s) 464
BanI GGYRCC 1 cut(s) 62
BccI CCATC 2 cut(s) 224, 353
BciT130I CCWGG 2 cut(s) 117, 174
BcoDI GTCTC 1 cut(s) 9
BfaI CTAG 3 cut(s) 405, 498, 522
BfoI RGCGCY 2 cut(s) 66, 528
BisI GCNGC 1 cut(s) 220
BlsI GCNGC 1 cut(s) 221
Bme1390I CCNGG 2 cut(s) 117, 174
Bme18I GGWCC 3 cut(s) 31, 176, 491
BmgT120I GGNCC 3 cut(s) 31, 176, 491
BmiI GGNNCC 1 cut(s) 64
BmrFI CCNGG 2 cut(s) 117, 174
BmsI GCATC 1 cut(s) 474
BpuEI CTTGAG 1 cut(s) 395
BsaHI GRCGYC 1 cut(s) 63
BsaJI CCNNGG 1 cut(s) 261
Bsc4I CCNNNNNNNGG 3 cut(s) 52, 151, 527
Bse1I ACTGG 2 cut(s) 166, 452
Bse21I CCTNAGG 1 cut(s) 101
BseBI CCWGG 2 cut(s) 117, 174
BseDI CCNNGG 1 cut(s) 261
BseGI GGATG 2 cut(s) 251, 271
BseLI CCNNNNNNNGG 3 cut(s) 52, 151, 527
BseMII CTCAG 2 cut(s) 115, 479
BseNI ACTGG 2 cut(s) 166, 452
BseSI GKGCMC 1 cut(s) 464
BsgI GTGCAG 1 cut(s) 495
BshFI GGCC 2 cut(s) 106, 196
BshNI GGYRCC 1 cut(s) 62
BslI CCNNNNNNNGG 3 cut(s) 52, 151, 527
BsmAI GTCTC 1 cut(s) 9
BsnI GGCC 2 cut(s) 106, 196
Bsp1286I GDGCHC 1 cut(s) 464
Bsp143I GATC 2 cut(s) 127, 517
BspACI CCGC 4 cut(s) 53, 142, 165, 219
BspANI GGCC 2 cut(s) 106, 196
BspCNI CTCAG 2 cut(s) 114, 478
BspLI GGNNCC 1 cut(s) 64
BspPI GGATC 1 cut(s) 512
BspT107I GGYRCC 1 cut(s) 62
BsrI ACTGG 2 cut(s) 166, 452
BssECI CCNNGG 1 cut(s) 261
BssMI GATC 2 cut(s) 127, 517
BssNAI GTATAC 1 cut(s) 211
BssNI GRCGYC 1 cut(s) 63
BssT1I CCWWGG 1 cut(s) 261
Bst1107I GTATAC 1 cut(s) 211
Bst2UI CCWGG 2 cut(s) 117, 174
Bst4CI ACNGT 1 cut(s) 322
BstACI GRCGYC 1 cut(s) 63
BstAPI GCANNNNNTGC 1 cut(s) 333
BstC8I GCNNGC 1 cut(s) 402
BstDEI CTNAG 3 cut(s) 101, 214, 465
BstF5I GGATG 2 cut(s) 251, 271
BstH2I RGCGCY 2 cut(s) 66, 528
BstHHI GCGC 2 cut(s) 65, 527
BstKTI GATC 2 cut(s) 130, 520
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 2 cut(s) 127, 517
BstMWI GCNNNNNNNGC 2 cut(s) 333, 406
BstNI CCWGG 2 cut(s) 117, 174
BstSCI CCNGG 2 cut(s) 115, 172
BstSLI GKGCMC 1 cut(s) 464
BstZ17I GTATAC 1 cut(s) 211
Bsu36I CCTNAGG 1 cut(s) 101
BsuRI GGCC 2 cut(s) 106, 196
BtsCI GGATG 2 cut(s) 251, 271
BtsIMutI CAGTG 2 cut(s) 159, 445
Cac8I GCNNGC 1 cut(s) 402
CfoI GCGC 2 cut(s) 65, 527
Cfr13I GGNCC 3 cut(s) 31, 176, 491
CsiI ACCWGGT 1 cut(s) 115
Csp6I GTAC 1 cut(s) 292
CviAII CATG 2 cut(s) 108, 455
CviJI RGCY 6 cut(s) 106, 196, 222, 299, 409, 426
CviKI_1 RGCY 6 cut(s) 106, 196, 222, 299, 409, 426
CviQI GTAC 1 cut(s) 292
DdeI CTNAG 3 cut(s) 101, 214, 465
DinI GGCGCC 1 cut(s) 64
DpnI GATC 2 cut(s) 129, 519
DpnII GATC 2 cut(s) 127, 517
DraI TTTAAA 1 cut(s) 432
EciI GGCGGA 1 cut(s) 131
Eco130I CCWWGG 1 cut(s) 261
Eco147I AGGCCT 1 cut(s) 196
Eco47I GGWCC 3 cut(s) 31, 176, 491
Eco47III AGCGCT 1 cut(s) 526
Eco81I CCTNAGG 1 cut(s) 101
EcoRII CCWGG 2 cut(s) 115, 172
EcoT14I CCWWGG 1 cut(s) 261
EgeI GGCGCC 1 cut(s) 64
EheI GGCGCC 1 cut(s) 64
ErhI CCWWGG 1 cut(s) 261
FaeI CATG 2 cut(s) 111, 458
FaiI YATR 8 cut(s) 109, 152, 185, 211, 286, 438, 456, 482
FatI CATG 2 cut(s) 107, 454
FblI GTMKAC 1 cut(s) 210
Fnu4HI GCNGC 1 cut(s) 220
FokI GGATG 2 cut(s) 258, 278
Fsp4HI GCNGC 1 cut(s) 220
FspBI CTAG 3 cut(s) 405, 498, 522
GlaI GCGC 2 cut(s) 64, 526
GluI GCNGC 1 cut(s) 220
HaeII RGCGCY 2 cut(s) 66, 528
HaeIII GGCC 2 cut(s) 106, 196
HhaI GCGC 2 cut(s) 65, 527
Hin1I GRCGYC 1 cut(s) 63
Hin1II CATG 2 cut(s) 111, 458
Hin6I GCGC 2 cut(s) 63, 525
HinP1I GCGC 2 cut(s) 63, 525
HinfI GANTC 1 cut(s) 392
Hpy166II GTNNAC 2 cut(s) 113, 211
Hpy188I TCNGA 3 cut(s) 47, 190, 468
Hpy188III TCNNGA 2 cut(s) 227, 389
Hpy8I GTNNAC 2 cut(s) 113, 211
Hpy99I CGWCG 2 cut(s) 17, 341
HpyAV CCTTC 4 cut(s) 76, 155, 233, 285
HpyCH4III ACNGT 1 cut(s) 322
HpyCH4IV ACGT 2 cut(s) 24, 339
HpyCH4V TGCA 2 cut(s) 58, 512
HpyF10VI GCNNNNNNNGC 2 cut(s) 333, 406
HpyF3I CTNAG 3 cut(s) 101, 214, 465
HpySE526I ACGT 2 cut(s) 24, 339
Hsp92I GRCGYC 1 cut(s) 63
Hsp92II CATG 2 cut(s) 111, 458
HspAI GCGC 2 cut(s) 63, 525
KasI GGCGCC 1 cut(s) 62
Kzo9I GATC 2 cut(s) 127, 517
LweI GCATC 1 cut(s) 474
MabI ACCWGGT 1 cut(s) 115
MaeI CTAG 3 cut(s) 405, 498, 522
MaeII ACGT 2 cut(s) 24, 339
MaeIII GTNAC 4 cut(s) 25, 135, 450, 500
MalI GATC 2 cut(s) 129, 519
MboI GATC 2 cut(s) 127, 517
MhlI GDGCHC 1 cut(s) 464
Mly113I GGCGCC 1 cut(s) 63
MnlI CCTC 8 cut(s) 44, 110, 189, 198, 207, 474, 504, 531
MseI TTAA 2 cut(s) 431, 506
MslI CAYNNNNRTG 1 cut(s) 283
MspR9I CCNGG 2 cut(s) 117, 174
MvaI CCWGG 2 cut(s) 117, 174
MwoI GCNNNNNNNGC 2 cut(s) 333, 406
NarI GGCGCC 1 cut(s) 63
NdeII GATC 2 cut(s) 127, 517
NlaIII CATG 2 cut(s) 111, 458
NlaIV GGNNCC 1 cut(s) 64
NmuCI GTSAC 2 cut(s) 25, 135
PceI AGGCCT 1 cut(s) 196
PcsI WCGNNNNNNNCGW 1 cut(s) 21
PfeI GAWTC 1 cut(s) 392
PkrI GCNGC 1 cut(s) 221
PluTI GGCGCC 1 cut(s) 66
Psp6I CCWGG 2 cut(s) 115, 172
PspGI CCWGG 2 cut(s) 115, 172
PspN4I GGNNCC 1 cut(s) 64
PspPI GGNCC 3 cut(s) 31, 176, 491
PsrI GAACNNNNNNTAC 2 cut(s) 435, 467
RsaI GTAC 1 cut(s) 293
RsaNI GTAC 1 cut(s) 292
RseI CAYNNNNRTG 1 cut(s) 283
SaqAI TTAA 2 cut(s) 431, 506
SatI GCNGC 1 cut(s) 220
Sau3AI GATC 2 cut(s) 127, 517
Sau96I GGNCC 3 cut(s) 31, 176, 491
ScrFI CCNGG 2 cut(s) 117, 174
SduI GDGCHC 1 cut(s) 464
SetI ASST 7 cut(s) 27, 36, 118, 244, 342, 354, 517
SexAI ACCWGGT 1 cut(s) 115
SfaNI GCATC 1 cut(s) 474
SfoI GGCGCC 1 cut(s) 64
SinI GGWCC 3 cut(s) 31, 176, 491
SmiMI CAYNNNNRTG 1 cut(s) 283
SmlI CTYRAG 1 cut(s) 410
SmoI CTYRAG 1 cut(s) 410
SseBI AGGCCT 1 cut(s) 196
SsiI CCGC 4 cut(s) 53, 142, 165, 219
SspDI GGCGCC 1 cut(s) 62
SspMI CTAG 3 cut(s) 405, 498, 522
StuI AGGCCT 1 cut(s) 196
StyD4I CCNGG 2 cut(s) 115, 172
StyI CCWWGG 1 cut(s) 261
TaaI ACNGT 1 cut(s) 322
TaiI ACGT 2 cut(s) 27, 342
TaqII GACCGA 1 cut(s) 479
TauI GCSGC 1 cut(s) 222
TfiI GAWTC 1 cut(s) 392
Tru1I TTAA 2 cut(s) 431, 506
Tru9I TTAA 2 cut(s) 431, 506
TscAI CASTG 2 cut(s) 166, 452
TseFI GTSAC 2 cut(s) 25, 135
Tsp45I GTSAC 2 cut(s) 25, 135
TspDTI ATGAA 2 cut(s) 267, 282
TspGWI ACGGA 2 cut(s) 44, 279
TspRI CASTG 2 cut(s) 166, 452
VpaK11BI GGWCC 3 cut(s) 31, 176, 491
XmiI GTMKAC 1 cut(s) 210
XspI CTAG 3 cut(s) 405, 498, 522
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.