Rh5DG098300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000181
Physical Location & Seq
Reverse (-)
8984646 .. 8988528
3883 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG098300.1

Sequence Viewer

Length: 519 bp
ATGTCTCTCGGCGACGAAAACAACATGATGGACCTCTCTGCTTTCCGATTGGCGGCGGTGCGAGGCTCCTTCAACCCCGATGGTACCAAGTTTGTGCCTATCTTCAGGCCATTAGAACCTGGTGCTTTAGATCGTGTGTCACTCCTCCGTCATATGGCGAACATTGGACCAATGACACCCATTGTTCAGACTCTACGCCCGGTCCGCCCTCCTGAAGGTAGATGTTTGATTTGTTCATTGGATGAACACACTTCATCTGAATGCCCGTACAACACTGAAGTCCCAAAGAACGCAATTGTTGGCAGTGGCTGTGACGTATTTTGTAAGGTTTGTGATTATTTGTTTTCTGAGCGCTGTTGTAACCAAAATTCAGGGCGTGCGAAGCTCAAGTATTGTAATTTATGTTCAAGCTACGGCGAACACTGGCACGTACTGTGCCCACGCAGATCTGGTGAATATGTGCTCAATCCTCCTGGTCACTTAACTAAATATGCTCGGAGGAACAAAAGTGGTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

172

Amino Acids

19.17

Weight (kDa)

8.66

Isoelectric Point (pI)

47.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000181)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 83
AccB1I GGYRCC 1 cut(s) 83
AciI CCGC 3 cut(s) 53, 56, 205
AcsI RAATTY 1 cut(s) 367
AcuI CTGAAG 3 cut(s) 88, 234, 297
AfaI GTAC 3 cut(s) 85, 269, 432
AfeI AGCGCT 1 cut(s) 353
AfiI CCNNNNNNNGG 3 cut(s) 52, 154, 215
AgsI TTSAA 2 cut(s) 73, 408
AjnI CCWGG 2 cut(s) 118, 472
AluBI AGCT 2 cut(s) 385, 411
AluI AGCT 2 cut(s) 385, 411
Alw21I GWGCWC 1 cut(s) 465
Alw26I GTCTC 1 cut(s) 9
AlwNI CAGNNNCTG 1 cut(s) 309
Aor51HI AGCGCT 1 cut(s) 353
AoxI GGCC 1 cut(s) 107
ApoI RAATTY 1 cut(s) 367
Asp718I GGTACC 1 cut(s) 83
AspLEI GCGC 1 cut(s) 354
AspS9I GGNCC 3 cut(s) 31, 167, 202
AsuC2I CCSGG 1 cut(s) 200
AsuHPI GGTGA 1 cut(s) 464
AvaII GGWCC 3 cut(s) 31, 167, 202
BaeGI GKGCMC 1 cut(s) 440
BanI GGYRCC 1 cut(s) 83
Bbv12I GWGCWC 1 cut(s) 465
BccI CCATC 2 cut(s) 22, 74
BceAI ACGGC 1 cut(s) 430
BciT130I CCWGG 2 cut(s) 120, 474
BcnI CCSGG 1 cut(s) 200
BcoDI GTCTC 1 cut(s) 9
BfoI RGCGCY 1 cut(s) 355
BglII AGATCT 1 cut(s) 446
BisI GCNGC 1 cut(s) 54
BlsI GCNGC 1 cut(s) 55
Bme1390I CCNGG 3 cut(s) 120, 200, 474
Bme18I GGWCC 3 cut(s) 31, 167, 202
BmgT120I GGNCC 3 cut(s) 31, 167, 202
BmiI GGNNCC 2 cut(s) 67, 85
BmrFI CCNGG 3 cut(s) 120, 200, 474
BpuEI CTTGAG 1 cut(s) 371
BpuMI CCSGG 1 cut(s) 200
BsaAI YACGTR 1 cut(s) 430
Bsc4I CCNNNNNNNGG 3 cut(s) 52, 154, 215
Bse1I ACTGG 1 cut(s) 428
BseBI CCWGG 2 cut(s) 120, 474
BseGI GGATG 1 cut(s) 247
BseLI CCNNNNNNNGG 3 cut(s) 52, 154, 215
BseMII CTCAG 1 cut(s) 339
BseNI ACTGG 1 cut(s) 428
BseRI GAGGAG 1 cut(s) 134
BseSI GKGCMC 1 cut(s) 440
BshFI GGCC 1 cut(s) 109
BshNI GGYRCC 1 cut(s) 83
BsiHKAI GWGCWC 1 cut(s) 465
BsiSI CCGG 1 cut(s) 200
BslFI GGGAC 1 cut(s) 266
BslI CCNNNNNNNGG 3 cut(s) 52, 154, 215
BsmAI GTCTC 1 cut(s) 9
BsmFI GGGAC 1 cut(s) 266
BsmI GAATGC 1 cut(s) 266
BsnI GGCC 1 cut(s) 109
Bsp1286I GDGCHC 2 cut(s) 440, 465
Bsp143I GATC 2 cut(s) 130, 446
BspACI CCGC 3 cut(s) 53, 56, 205
BspANI GGCC 1 cut(s) 109
BspCNI CTCAG 1 cut(s) 340
BspLI GGNNCC 2 cut(s) 67, 85
BspT107I GGYRCC 1 cut(s) 83
BsrI ACTGG 1 cut(s) 428
BssMI GATC 2 cut(s) 130, 446
Bst2UI CCWGG 2 cut(s) 120, 474
Bst4CI ACNGT 1 cut(s) 435
BstBAI YACGTR 1 cut(s) 430
BstC8I GCNNGC 1 cut(s) 378
BstDEI CTNAG 1 cut(s) 348
BstENI CCTNNNNNAGG 1 cut(s) 213
BstF5I GGATG 1 cut(s) 247
BstH2I RGCGCY 1 cut(s) 355
BstHHI GCGC 1 cut(s) 354
BstKTI GATC 2 cut(s) 133, 449
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 2 cut(s) 130, 446
BstMWI GCNNNNNNNGC 2 cut(s) 204, 382
BstNI CCWGG 2 cut(s) 120, 474
BstSCI CCNGG 3 cut(s) 118, 198, 472
BstSLI GKGCMC 1 cut(s) 440
BstX2I RGATCY 1 cut(s) 446
BstYI RGATCY 1 cut(s) 446
BsuRI GGCC 1 cut(s) 109
BtsCI GGATG 1 cut(s) 247
BtsI GCAGTG 1 cut(s) 310
BtsIMutI CAGTG 3 cut(s) 273, 310, 421
Cac8I GCNNGC 1 cut(s) 378
CaiI CAGNNNCTG 1 cut(s) 309
CfoI GCGC 1 cut(s) 354
Cfr13I GGNCC 3 cut(s) 31, 167, 202
CpoI CGGWCCG 1 cut(s) 202
CsiI ACCWGGT 1 cut(s) 118
Csp6I GTAC 3 cut(s) 84, 268, 431
CspI CGGWCCG 1 cut(s) 202
CviAII CATG 1 cut(s) 25
CviJI RGCY 5 cut(s) 66, 109, 309, 385, 411
CviKI_1 RGCY 5 cut(s) 66, 109, 309, 385, 411
CviQI GTAC 3 cut(s) 84, 268, 431
DdeI CTNAG 1 cut(s) 348
DpnI GATC 2 cut(s) 132, 448
DpnII GATC 2 cut(s) 130, 446
EciI GGCGGA 1 cut(s) 194
Eco47I GGWCC 3 cut(s) 31, 167, 202
Eco47III AGCGCT 1 cut(s) 353
Eco57I CTGAAG 3 cut(s) 88, 234, 297
EcoNI CCTNNNNNAGG 1 cut(s) 213
EcoRII CCWGG 2 cut(s) 118, 472
FaeI CATG 1 cut(s) 28
FaiI YATR 6 cut(s) 26, 153, 155, 403, 459, 492
FaqI GGGAC 1 cut(s) 266
FatI CATG 1 cut(s) 24
FauNDI CATATG 1 cut(s) 153
Fnu4HI GCNGC 1 cut(s) 54
FokI GGATG 1 cut(s) 254
Fsp4HI GCNGC 1 cut(s) 54
GlaI GCGC 1 cut(s) 353
GluI GCNGC 1 cut(s) 54
HaeII RGCGCY 1 cut(s) 355
HaeIII GGCC 1 cut(s) 109
HapII CCGG 1 cut(s) 200
HhaI GCGC 1 cut(s) 354
Hin1II CATG 1 cut(s) 28
Hin6I GCGC 1 cut(s) 352
HinP1I GCGC 1 cut(s) 352
HinfI GANTC 1 cut(s) 190
HpaII CCGG 1 cut(s) 200
HphI GGTGA 1 cut(s) 464
Hpy188I TCNGA 5 cut(s) 47, 189, 259, 349, 498
Hpy188III TCNNGA 1 cut(s) 212
Hpy99I CGWCG 1 cut(s) 17
HpyAV CCTTC 2 cut(s) 79, 209
HpyCH4III ACNGT 1 cut(s) 435
HpyCH4IV ACGT 2 cut(s) 315, 429
HpyF10VI GCNNNNNNNGC 2 cut(s) 204, 382
HpyF3I CTNAG 1 cut(s) 348
HpySE526I ACGT 2 cut(s) 315, 429
Hsp92II CATG 1 cut(s) 28
HspAI GCGC 1 cut(s) 352
KpnI GGTACC 1 cut(s) 87
Kzo9I GATC 2 cut(s) 130, 446
LmnI GCTCC 1 cut(s) 71
MabI ACCWGGT 1 cut(s) 118
MaeII ACGT 2 cut(s) 315, 429
MaeIII GTNAC 4 cut(s) 138, 311, 359, 476
MalI GATC 2 cut(s) 132, 448
MboI GATC 2 cut(s) 130, 446
MboII GAAGA 1 cut(s) 94
MfeI CAATTG 1 cut(s) 294
MflI RGATCY 1 cut(s) 446
MhlI GDGCHC 2 cut(s) 440, 465
MluCI AATT 3 cut(s) 294, 367, 397
MlyI GAGTC 1 cut(s) 184
MnlI CCTC 6 cut(s) 44, 56, 155, 219, 480, 492
MseI TTAA 1 cut(s) 482
MslI CAYNNNNRTG 1 cut(s) 259
MspI CCGG 1 cut(s) 200
MspR9I CCNGG 3 cut(s) 120, 200, 474
MunI CAATTG 1 cut(s) 294
Mva1269I GAATGC 1 cut(s) 266
MvaI CCWGG 2 cut(s) 120, 474
MwoI GCNNNNNNNGC 2 cut(s) 204, 382
NciI CCSGG 1 cut(s) 200
NdeI CATATG 1 cut(s) 153
NdeII GATC 2 cut(s) 130, 446
NlaIII CATG 1 cut(s) 28
NlaIV GGNNCC 2 cut(s) 67, 85
NmuCI GTSAC 3 cut(s) 138, 311, 476
PctI GAATGC 1 cut(s) 266
PkrI GCNGC 1 cut(s) 55
PleI GAGTC 1 cut(s) 184
PpsI GAGTC 1 cut(s) 184
Ppu21I YACGTR 1 cut(s) 430
Psp6I CCWGG 2 cut(s) 118, 472
PspGI CCWGG 2 cut(s) 118, 472
PspN4I GGNNCC 2 cut(s) 67, 85
PspPI GGNCC 3 cut(s) 31, 167, 202
PsrI GAACNNNNNNTAC 2 cut(s) 388, 420
PstNI CAGNNNCTG 1 cut(s) 309
PsuI RGATCY 1 cut(s) 446
RsaI GTAC 3 cut(s) 85, 269, 432
RsaNI GTAC 3 cut(s) 84, 268, 431
RseI CAYNNNNRTG 1 cut(s) 259
Rsr2I CGGWCCG 1 cut(s) 202
RsrII CGGWCCG 1 cut(s) 202
SaqAI TTAA 1 cut(s) 482
SatI GCNGC 1 cut(s) 54
Sau3AI GATC 2 cut(s) 130, 446
Sau96I GGNCC 3 cut(s) 31, 167, 202
SchI GAGTC 1 cut(s) 184
ScrFI CCNGG 3 cut(s) 120, 200, 474
SduI GDGCHC 2 cut(s) 440, 465
SetI ASST 8 cut(s) 36, 121, 220, 318, 330, 387, 413, 432
SexAI ACCWGGT 1 cut(s) 118
SinI GGWCC 3 cut(s) 31, 167, 202
SmiMI CAYNNNNRTG 1 cut(s) 259
SmlI CTYRAG 1 cut(s) 386
SmoI CTYRAG 1 cut(s) 386
Sse9I AATT 3 cut(s) 294, 367, 397
SsiI CCGC 3 cut(s) 53, 56, 205
StyD4I CCNGG 3 cut(s) 118, 198, 472
TaaI ACNGT 1 cut(s) 435
TaiI ACGT 2 cut(s) 318, 432
TasI AATT 3 cut(s) 294, 367, 397
TauI GCSGC 1 cut(s) 56
Tru1I TTAA 1 cut(s) 482
Tru9I TTAA 1 cut(s) 482
TscAI CASTG 3 cut(s) 280, 310, 428
TseFI GTSAC 3 cut(s) 138, 311, 476
Tsp45I GTSAC 3 cut(s) 138, 311, 476
TspDTI ATGAA 3 cut(s) 225, 243, 258
TspGWI ACGGA 1 cut(s) 137
TspRI CASTG 3 cut(s) 280, 310, 428
VpaK11BI GGWCC 3 cut(s) 31, 167, 202
XagI CCTNNNNNAGG 1 cut(s) 213
XapI RAATTY 1 cut(s) 367
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.