Rroxscaffold_2G00096560

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000181
Physical Location & Seq
Forward (+)
17850915 .. 17852545
1631 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00096560.1

Sequence Viewer

Length: 660 bp
ATGTCTCTTGTCGAATCAGAATTCTCCAAGGATCCGAACCCGAACCCGAACCCGAACCCGAACCCGAACCCGAACCCGAACCCGAACCCGTACCTGAACCAAGTCCTGCTGGAGGAGGACGACAAGATCCAGGCTCATGGAAAACACAAGGCTGCTGAAGACTCTCTGTCTCAACTTGAAGTAGAGGAAGTAGAGGAAGAAGATGAAGAAGGAGAAGAAGAAGCAGAAGCAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGAGAAGAAGAATTTGAGTTGTGTGATGTTTGTTTGAAGGACAAGGAACACTGGAAGGATGAATGCCCGTACTTGGTTTGTATCCCAAACCCAATGGAAGTAACTCTTGGCAAAGGTTATTATATGGTTTGTGTGGACTGTAATGTGTCGGGTGGCCACTCTGATATAGTCGGTACACAATGTAATGTGTGGGGTGGCCACCCTGATAGGAGGTGGAAAGGACGTGCTATTGTCAAGGTCTGCGGTATTTGTGCGGGCGTACGCCACTGGTCTGCAGAGTGCCCAAATAAGCACTTATTACAAAAGCAAAAGAGTCTGTTGGAGTGTGCTGCTGAATATCGGTCTTGGTTGGCTACCAAAAAAAATGTCAACCTGCTTGATTTGATGAATCATAACTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

219

Amino Acids

24.86

Weight (kDa)

4.5

Isoelectric Point (pI)

55.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000181)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 639
AciI CCGC 2 cut(s) 501, 512
AclWI GGATC 3 cut(s) 26, 39, 121
AcoI YGGCCR 2 cut(s) 412, 454
AcsI RAATTY 2 cut(s) 20, 269
AcuI CTGAAG 1 cut(s) 177
AfaI GTAC 4 cut(s) 92, 329, 433, 519
AfiI CCNNNNNNNGG 2 cut(s) 112, 331
AgsI TTSAA 2 cut(s) 179, 295
AhdI GACNNNNNGTC 1 cut(s) 166
AjiI CACGTC 1 cut(s) 482
AjnI CCWGG 1 cut(s) 129
AjuI GAANNNNNNNTTGG 2 cut(s) 348, 380
Alw26I GTCTC 2 cut(s) 9, 174
AlwI GGATC 3 cut(s) 26, 39, 121
AoxI GGCC 2 cut(s) 412, 454
ApeKI GCWGC 2 cut(s) 152, 587
ApoI RAATTY 2 cut(s) 20, 269
ArsI GACNNNNNNTTYG 2 cut(s) 609, 641
BaeGI GKGCMC 1 cut(s) 542
BalI TGGCCA 2 cut(s) 414, 456
BamHI GGATCC 1 cut(s) 31
BbsI GAAGAC 1 cut(s) 165
BbvI GCAGC 2 cut(s) 139, 574
BciT130I CCWGG 1 cut(s) 131
BciVI GTATCC 1 cut(s) 350
BcoDI GTCTC 2 cut(s) 9, 174
BfaI CTAG 1 cut(s) 658
BfmI CTRYAG 1 cut(s) 531
BfuAI ACCTGC 1 cut(s) 639
BfuI GTATCC 1 cut(s) 350
BisI GCNGC 2 cut(s) 153, 588
BlsI GCNGC 2 cut(s) 154, 589
Bme1390I CCNGG 1 cut(s) 131
BmeRI GACNNNNNGTC 1 cut(s) 166
BmgBI CACGTC 1 cut(s) 482
BmiI GGNNCC 1 cut(s) 33
BmrFI CCNGG 1 cut(s) 131
BpiI GAAGAC 1 cut(s) 165
BpmI CTGGAG 1 cut(s) 131
BsaJI CCNNGG 1 cut(s) 27
Bsc4I CCNNNNNNNGG 2 cut(s) 112, 331
Bse1I ACTGG 2 cut(s) 314, 530
BseBI CCWGG 1 cut(s) 131
BseDI CCNNGG 1 cut(s) 27
BseGI GGATG 1 cut(s) 322
BseLI CCNNNNNNNGG 2 cut(s) 112, 331
BseNI ACTGG 2 cut(s) 314, 530
BseRI GAGGAG 1 cut(s) 128
BseSI GKGCMC 1 cut(s) 542
BseXI GCAGC 2 cut(s) 139, 574
BshFI GGCC 2 cut(s) 414, 456
BsiWI CGTACG 1 cut(s) 517
BslI CCNNNNNNNGG 2 cut(s) 112, 331
BsmAI GTCTC 2 cut(s) 9, 174
BsmI GAATGC 1 cut(s) 326
BsnI GGCC 2 cut(s) 414, 456
Bsp1286I GDGCHC 1 cut(s) 542
Bsp143I GATC 2 cut(s) 31, 126
BspACI CCGC 2 cut(s) 501, 512
BspANI GGCC 2 cut(s) 414, 456
BspLI GGNNCC 1 cut(s) 33
BspMAI CTGCAG 1 cut(s) 535
BspMI ACCTGC 1 cut(s) 639
BspPI GGATC 3 cut(s) 26, 39, 121
BsrI ACTGG 2 cut(s) 314, 530
BssECI CCNNGG 1 cut(s) 27
BssMI GATC 2 cut(s) 31, 126
BssT1I CCWWGG 1 cut(s) 27
Bst2UI CCWGG 1 cut(s) 131
Bst4CI ACNGT 1 cut(s) 398
BstC8I GCNNGC 1 cut(s) 514
BstENI CCTNNNNNAGG 1 cut(s) 110
BstF5I GGATG 1 cut(s) 322
BstKTI GATC 2 cut(s) 34, 129
BstMAI GTCTC 2 cut(s) 9, 174
BstMBI GATC 2 cut(s) 31, 126
BstNI CCWGG 1 cut(s) 131
BstSCI CCNGG 1 cut(s) 129
BstSFI CTRYAG 1 cut(s) 531
BstSLI GKGCMC 1 cut(s) 542
BstV1I GCAGC 2 cut(s) 139, 574
BstV2I GAAGAC 1 cut(s) 165
BstX2I RGATCY 2 cut(s) 31, 126
BstXI CCANNNNNNTGG 1 cut(s) 137
BstYI RGATCY 2 cut(s) 31, 126
BsuI GTATCC 1 cut(s) 350
BsuRI GGCC 2 cut(s) 414, 456
BtrI CACGTC 1 cut(s) 482
BtsCI GGATG 1 cut(s) 322
BtsIMutI CAGTG 2 cut(s) 307, 523
BveI ACCTGC 1 cut(s) 639
Cac8I GCNNGC 1 cut(s) 514
Csp6I GTAC 4 cut(s) 91, 328, 432, 518
CviAII CATG 1 cut(s) 137
CviJI RGCY 5 cut(s) 134, 152, 414, 456, 611
CviKI_1 RGCY 5 cut(s) 134, 152, 414, 456, 611
CviQI GTAC 4 cut(s) 91, 328, 432, 518
DpnI GATC 2 cut(s) 33, 128
DpnII GATC 2 cut(s) 31, 126
DriI GACNNNNNGTC 1 cut(s) 166
EaeI YGGCCR 2 cut(s) 412, 454
Eam1105I GACNNNNNGTC 1 cut(s) 166
Eco130I CCWWGG 1 cut(s) 27
Eco57I CTGAAG 1 cut(s) 177
EcoNI CCTNNNNNAGG 1 cut(s) 110
EcoRI GAATTC 1 cut(s) 20
EcoRII CCWGG 1 cut(s) 129
EcoT14I CCWWGG 1 cut(s) 27
ErhI CCWWGG 1 cut(s) 27
FaeI CATG 1 cut(s) 140
FaiI YATR 5 cut(s) 138, 381, 383, 425, 651
FalI AAGNNNNNCTT 2 cut(s) 348, 380
FatI CATG 1 cut(s) 136
FauI CCCGC 1 cut(s) 505
Fnu4HI GCNGC 2 cut(s) 153, 588
FokI GGATG 1 cut(s) 329
Fsp4HI GCNGC 2 cut(s) 153, 588
FspBI CTAG 1 cut(s) 658
GluI GCNGC 2 cut(s) 153, 588
GsuI CTGGAG 1 cut(s) 131
HaeIII GGCC 2 cut(s) 414, 456
Hin1II CATG 1 cut(s) 140
HincII GTYRAC 1 cut(s) 628
HindII GTYRAC 1 cut(s) 628
HinfI GANTC 4 cut(s) 14, 161, 571, 646
Hpy166II GTNNAC 3 cut(s) 394, 434, 628
Hpy188I TCNGA 3 cut(s) 19, 36, 421
Hpy8I GTNNAC 3 cut(s) 394, 434, 628
HpyAV CCTTC 4 cut(s) 203, 251, 289, 307
HpyCH4III ACNGT 1 cut(s) 398
HpyCH4IV ACGT 1 cut(s) 481
HpyCH4V TGCA 1 cut(s) 533
HpySE526I ACGT 1 cut(s) 481
Hsp92II CATG 1 cut(s) 140
Kzo9I GATC 2 cut(s) 31, 126
LpnPI CCDG 9 cut(s) 95, 107, 116, 119, 143, 295, 474, 511, 644
Lsp1109I GCAGC 2 cut(s) 139, 574
MaeI CTAG 1 cut(s) 658
MaeII ACGT 1 cut(s) 481
MaeIII GTNAC 1 cut(s) 358
MalI GATC 2 cut(s) 33, 128
MboI GATC 2 cut(s) 31, 126
MflI RGATCY 2 cut(s) 31, 126
MhlI GDGCHC 1 cut(s) 542
MlsI TGGCCA 2 cut(s) 414, 456
MluCI AATT 2 cut(s) 20, 269
MluNI TGGCCA 2 cut(s) 414, 456
MlyI GAGTC 2 cut(s) 155, 580
MmeI TCCRAC 1 cut(s) 558
MnlI CCTC 5 cut(s) 106, 109, 178, 187, 462
Mox20I TGGCCA 2 cut(s) 414, 456
MscI TGGCCA 2 cut(s) 414, 456
Msp20I TGGCCA 2 cut(s) 414, 456
MspR9I CCNGG 1 cut(s) 131
Mva1269I GAATGC 1 cut(s) 326
MvaI CCWGG 1 cut(s) 131
NdeII GATC 2 cut(s) 31, 126
NlaIII CATG 1 cut(s) 140
NlaIV GGNNCC 1 cut(s) 33
PctI GAATGC 1 cut(s) 326
PfeI GAWTC 2 cut(s) 14, 646
Pfl23II CGTACG 1 cut(s) 517
PkrI GCNGC 2 cut(s) 154, 589
PleI GAGTC 2 cut(s) 155, 579
PpsI GAGTC 2 cut(s) 155, 579
Psp6I CCWGG 1 cut(s) 129
PspGI CCWGG 1 cut(s) 129
PspLI CGTACG 1 cut(s) 517
PspN4I GGNNCC 1 cut(s) 33
PstI CTGCAG 1 cut(s) 535
PsuI RGATCY 2 cut(s) 31, 126
RsaI GTAC 4 cut(s) 92, 329, 433, 519
RsaNI GTAC 4 cut(s) 91, 328, 432, 518
SatI GCNGC 2 cut(s) 153, 588
Sau3AI GATC 2 cut(s) 31, 126
SchI GAGTC 2 cut(s) 155, 580
ScrFI CCNGG 1 cut(s) 131
SduI GDGCHC 1 cut(s) 542
SetI ASST 6 cut(s) 96, 376, 473, 484, 498, 633
SfcI CTRYAG 1 cut(s) 531
Sse9I AATT 2 cut(s) 20, 269
SsiI CCGC 2 cut(s) 501, 512
SspMI CTAG 1 cut(s) 658
StyD4I CCNGG 1 cut(s) 129
StyI CCWWGG 1 cut(s) 27
TaaI ACNGT 1 cut(s) 398
TaiI ACGT 1 cut(s) 484
TaqI TCGA 1 cut(s) 12
TaqII GACCGA 1 cut(s) 588
TasI AATT 2 cut(s) 20, 269
TfiI GAWTC 2 cut(s) 14, 646
TscAI CASTG 2 cut(s) 314, 530
TseI GCWGC 2 cut(s) 152, 587
TspDTI ATGAA 3 cut(s) 219, 333, 659
TspRI CASTG 2 cut(s) 314, 530
XagI CCTNNNNNAGG 1 cut(s) 110
XapI RAATTY 2 cut(s) 20, 269
XspI CTAG 1 cut(s) 658
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.