Rorug05G0173700

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000181
Physical Location & Seq
Reverse (-)
16188228 .. 16189713
1486 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0173700.1

Sequence Viewer

Length: 486 bp
ATGACGAAGTTAAGGAAGCTGAACCGAACCACGGCTCATCGCATATCCATGCTGAGGACGATGGTGTCGCAGTTGGTGAAGCACGAGCGCATTGAAACCACGGTTGCCAAGGCAAAAGAGGTTCGACGTCAGGCTGATAGAATGGTGCAGCTTGGAAAAGATGGTTCACTCTGTGCAGCGAGGCGTGCTGCTGCTTTTGTGCGTGGGGATGATGTAATTCACAAGCTATTTACAGAACTGGCCTATCGGTACAAAGATCGGGTAGGTGGATATACAAGACTGCTTCGGACACGTATACGAGTTGGTGATGCTGCACCCATGGCCTATATTGAGTTCATTGACAGAGAAAATGAGCTCAGAGAATCAAAACCACCGGCCCCTCAACCACCACCACCAAGAGTTCCCTTGGATCCTTGGGCAAGATCCAAGCTCTGCAAGCAGTTTGCACCCCCTAAAGAAGATAAAAACAAGAGCTCCGAGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

161

Amino Acids

18.52

Weight (kDa)

10.37

Isoelectric Point (pI)

47.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L17 PF01196 17 - 113 2.9e-35 Ribosomal protein L17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000181)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 64
AatII GACGTC 1 cut(s) 130
AccI GTMKAC 1 cut(s) 295
AclWI GGATC 3 cut(s) 404, 417, 417
AcyI GRCGYC 1 cut(s) 127
AdeI CACNNNGTG 1 cut(s) 173
AfaI GTAC 1 cut(s) 251
AfiI CCNNNNNNNGG 2 cut(s) 31, 54
AflIII ACRYGT 1 cut(s) 290
AgsI TTSAA 1 cut(s) 95
AluBI AGCT 6 cut(s) 19, 151, 226, 355, 430, 474
AluI AGCT 6 cut(s) 19, 151, 226, 355, 430, 474
Alw21I GWGCWC 2 cut(s) 357, 476
AlwI GGATC 3 cut(s) 404, 417, 417
AoxI GGCC 3 cut(s) 240, 321, 375
ApeKI GCWGC 5 cut(s) 148, 176, 188, 191, 311
AspLEI GCGC 1 cut(s) 90
AspS9I GGNCC 1 cut(s) 376
AsuHPI GGTGA 2 cut(s) 88, 317
BamHI GGATCC 1 cut(s) 409
BanII GRGCYC 2 cut(s) 357, 476
BauI CACGAG 1 cut(s) 83
Bbv12I GWGCWC 2 cut(s) 357, 476
BbvCI CCTCAGC 1 cut(s) 53
BbvI GCAGC 5 cut(s) 160, 175, 178, 188, 298
BccI CCATC 2 cut(s) 55, 155
BceAI ACGGC 1 cut(s) 48
BisI GCNGC 5 cut(s) 149, 177, 189, 192, 312
BlsI GCNGC 5 cut(s) 150, 178, 190, 193, 313
BmgT120I GGNCC 1 cut(s) 376
BmiI GGNNCC 2 cut(s) 378, 411
BmsI GCATC 1 cut(s) 298
Bpu10I CCTNAGC 1 cut(s) 53
BsaAI YACGTR 1 cut(s) 293
BsaHI GRCGYC 1 cut(s) 127
BsaJI CCNNGG 6 cut(s) 30, 99, 108, 318, 405, 413
BsaXI ACNNNNNCTCC 1 cut(s) 458
Bsc4I CCNNNNNNNGG 2 cut(s) 31, 54
Bse118I RCCGGY 1 cut(s) 373
Bse1I ACTGG 1 cut(s) 243
BseDI CCNNGG 6 cut(s) 30, 99, 108, 318, 405, 413
BseGI GGATG 1 cut(s) 214
BseLI CCNNNNNNNGG 2 cut(s) 31, 54
BseMII CTCAG 2 cut(s) 44, 370
BseNI ACTGG 1 cut(s) 243
BseXI GCAGC 5 cut(s) 160, 175, 178, 188, 298
BsgI GTGCAG 3 cut(s) 167, 195, 297
BshFI GGCC 3 cut(s) 242, 323, 377
BsiHKAI GWGCWC 2 cut(s) 357, 476
BsiSI CCGG 1 cut(s) 374
BslI CCNNNNNNNGG 2 cut(s) 31, 54
BsnI GGCC 3 cut(s) 242, 323, 377
Bsp1286I GDGCHC 2 cut(s) 357, 476
Bsp143I GATC 3 cut(s) 256, 409, 422
Bsp19I CCATGG 1 cut(s) 318
BspANI GGCC 3 cut(s) 242, 323, 377
BspCNI CTCAG 2 cut(s) 45, 369
BspLI GGNNCC 2 cut(s) 378, 411
BspPI GGATC 3 cut(s) 404, 417, 417
BsrFI RCCGGY 1 cut(s) 373
BsrI ACTGG 1 cut(s) 243
BssAI RCCGGY 1 cut(s) 373
BssECI CCNNGG 6 cut(s) 30, 99, 108, 318, 405, 413
BssMI GATC 3 cut(s) 256, 409, 422
BssNAI GTATAC 1 cut(s) 296
BssNI GRCGYC 1 cut(s) 127
BssSI CACGAG 1 cut(s) 83
BssT1I CCWWGG 4 cut(s) 108, 318, 405, 413
Bst1107I GTATAC 1 cut(s) 296
Bst2BI CACGAG 1 cut(s) 83
Bst4CI ACNGT 1 cut(s) 103
BstACI GRCGYC 1 cut(s) 127
BstBAI YACGTR 1 cut(s) 293
BstC8I GCNNGC 2 cut(s) 186, 437
BstDEI CTNAG 2 cut(s) 53, 356
BstDSI CCRYGG 3 cut(s) 30, 99, 318
BstF5I GGATG 1 cut(s) 214
BstHHI GCGC 1 cut(s) 90
BstKTI GATC 3 cut(s) 259, 412, 425
BstMBI GATC 3 cut(s) 256, 409, 422
BstMWI GCNNNNNNNGC 3 cut(s) 185, 320, 436
BstV1I GCAGC 5 cut(s) 160, 175, 178, 188, 298
BstX2I RGATCY 2 cut(s) 409, 422
BstYI RGATCY 2 cut(s) 409, 422
BstZ17I GTATAC 1 cut(s) 296
BsuRI GGCC 3 cut(s) 242, 323, 377
BtgI CCRYGG 3 cut(s) 30, 99, 318
BtgZI GCGATG 1 cut(s) 23
BtsCI GGATG 1 cut(s) 214
Cac8I GCNNGC 2 cut(s) 186, 437
CfoI GCGC 1 cut(s) 90
Cfr10I RCCGGY 1 cut(s) 373
Cfr13I GGNCC 1 cut(s) 376
Csp6I GTAC 1 cut(s) 250
CviAII CATG 2 cut(s) 49, 319
CviQI GTAC 1 cut(s) 250
DdeI CTNAG 2 cut(s) 53, 356
DpnI GATC 3 cut(s) 258, 411, 424
DpnII GATC 3 cut(s) 256, 409, 422
DraIII CACNNNGTG 1 cut(s) 173
DrdI GACNNNNNNGTC 1 cut(s) 64
DseDI GACNNNNNNGTC 1 cut(s) 64
Ecl136II GAGCTC 2 cut(s) 355, 474
Eco130I CCWWGG 4 cut(s) 108, 318, 405, 413
Eco24I GRGCYC 2 cut(s) 357, 476
Eco53kI GAGCTC 2 cut(s) 355, 474
EcoICRI GAGCTC 2 cut(s) 355, 474
EcoT14I CCWWGG 4 cut(s) 108, 318, 405, 413
EcoT38I GRGCYC 2 cut(s) 357, 476
ErhI CCWWGG 4 cut(s) 108, 318, 405, 413
FaeI CATG 2 cut(s) 52, 322
FaiI YATR 6 cut(s) 44, 50, 273, 296, 320, 327
FatI CATG 2 cut(s) 48, 318
FblI GTMKAC 1 cut(s) 295
Fnu4HI GCNGC 5 cut(s) 149, 177, 189, 192, 312
FokI GGATG 1 cut(s) 221
FriOI GRGCYC 2 cut(s) 357, 476
Fsp4HI GCNGC 5 cut(s) 149, 177, 189, 192, 312
GlaI GCGC 1 cut(s) 89
GluI GCNGC 5 cut(s) 149, 177, 189, 192, 312
HaeIII GGCC 3 cut(s) 242, 323, 377
HapII CCGG 1 cut(s) 374
HhaI GCGC 1 cut(s) 90
Hin1I GRCGYC 1 cut(s) 127
Hin1II CATG 2 cut(s) 52, 322
Hin6I GCGC 1 cut(s) 88
HinP1I GCGC 1 cut(s) 88
HinfI GANTC 1 cut(s) 362
HpaII CCGG 1 cut(s) 374
HphI GGTGA 2 cut(s) 88, 317
Hpy166II GTNNAC 2 cut(s) 167, 296
Hpy188I TCNGA 3 cut(s) 288, 359, 478
Hpy8I GTNNAC 2 cut(s) 167, 296
Hpy99I CGWCG 1 cut(s) 129
HpyCH4III ACNGT 1 cut(s) 103
HpyCH4IV ACGT 2 cut(s) 127, 292
HpyCH4V TGCA 5 cut(s) 148, 176, 314, 435, 446
HpyF10VI GCNNNNNNNGC 3 cut(s) 185, 320, 436
HpyF3I CTNAG 2 cut(s) 53, 356
HpySE526I ACGT 2 cut(s) 127, 292
Hsp92I GRCGYC 1 cut(s) 127
Hsp92II CATG 2 cut(s) 52, 322
HspAI GCGC 1 cut(s) 88
Kzo9I GATC 3 cut(s) 256, 409, 422
LmnI GCTCC 1 cut(s) 479
LpnPI CCDG 3 cut(s) 116, 224, 387
Lsp1109I GCAGC 5 cut(s) 160, 175, 178, 188, 298
LweI GCATC 1 cut(s) 298
MaeII ACGT 2 cut(s) 127, 292
MalI GATC 3 cut(s) 258, 411, 424
MboI GATC 3 cut(s) 256, 409, 422
MboII GAAGA 1 cut(s) 470
MflI RGATCY 2 cut(s) 409, 422
MhlI GDGCHC 2 cut(s) 357, 476
MluCI AATT 1 cut(s) 216
MnlI CCTC 4 cut(s) 48, 112, 174, 390
MseI TTAA 1 cut(s) 11
MslI CAYNNNNRTG 1 cut(s) 47
MspI CCGG 1 cut(s) 374
MwoI GCNNNNNNNGC 3 cut(s) 185, 320, 436
NcoI CCATGG 1 cut(s) 318
NdeII GATC 3 cut(s) 256, 409, 422
NlaIII CATG 2 cut(s) 52, 322
NlaIV GGNNCC 2 cut(s) 378, 411
PfeI GAWTC 1 cut(s) 362
PkrI GCNGC 5 cut(s) 150, 178, 190, 193, 313
Ppu21I YACGTR 1 cut(s) 293
Psp124BI GAGCTC 2 cut(s) 357, 476
PspN4I GGNNCC 2 cut(s) 378, 411
PspPI GGNCC 1 cut(s) 376
PsuI RGATCY 2 cut(s) 409, 422
RsaI GTAC 1 cut(s) 251
RsaNI GTAC 1 cut(s) 250
RseI CAYNNNNRTG 1 cut(s) 47
SacI GAGCTC 2 cut(s) 357, 476
SaqAI TTAA 1 cut(s) 11
SatI GCNGC 5 cut(s) 149, 177, 189, 192, 312
Sau3AI GATC 3 cut(s) 256, 409, 422
Sau96I GGNCC 1 cut(s) 376
SduI GDGCHC 2 cut(s) 357, 476
SfaNI GCATC 1 cut(s) 298
SmiMI CAYNNNNRTG 1 cut(s) 47
Sse9I AATT 1 cut(s) 216
SstI GAGCTC 2 cut(s) 357, 476
StyI CCWWGG 4 cut(s) 108, 318, 405, 413
TaaI ACNGT 1 cut(s) 103
TaiI ACGT 2 cut(s) 130, 295
TaqI TCGA 1 cut(s) 124
TasI AATT 1 cut(s) 216
TfiI GAWTC 1 cut(s) 362
Tru1I TTAA 1 cut(s) 11
Tru9I TTAA 1 cut(s) 11
TseI GCWGC 5 cut(s) 148, 176, 188, 191, 311
TspDTI ATGAA 1 cut(s) 325
XmiI GTMKAC 1 cut(s) 295
ZraI GACGTC 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.