MD08G1122200.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0000181
Physical Location & Seq
Forward (+)
11234521 .. 11246291
11771 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1122200.v1.1.491

Sequence Viewer

Length: 516 bp
ATGGAGTGGCCTCCGTTGAACGAGATCGATGCGAACGTCCAGATGCAGAACCCTAATGACGAAGCCATGTTCGACGAAGCAACCATGGTCGATGATGATGAAGTAATGGGCAAATCTACTAAAGCAACCCTCAAACCAAAACCAAGTTGGTTCGATGATGATGATGATGACTGCATTGGGCAGAATCCTAACGATGAAGGTGAAGGTATACAAAACGCGATTGGAGACCCAATGGCTCGACTCCAATTGCGAAAAAAACGTAATTACTGTGAAGTTTGTTGTGAGGAAGTTGAGGACCACAAGAGTTACAATTGCCCGTACTTTGTTTTGGTCCCAAAGGGCGCTCGTGTTGGCGAACACTGTGATATAGTTTGCACAGAATGTGGTGAGCAAGTTTCTAAGCACGAAGGTGAGCTTAATGTGCACTATGAAGGACGTGCTATTTTGAAGTACTGTCATCGGTGTCAGGATTACCGTAGCCACTGGACTGAAGAATGTGAGTCGATGCGAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

172

Amino Acids

19.71

Weight (kDa)

4.59

Isoelectric Point (pI)

37.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000181)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 208
AccII CGCG 1 cut(s) 218
AcuI CTGAAG 1 cut(s) 510
AfaI GTAC 2 cut(s) 320, 452
AgsI TTSAA 2 cut(s) 19, 448
AjiI CACGTC 1 cut(s) 437
AleI CACNNNNGTG 1 cut(s) 408
AluBI AGCT 1 cut(s) 415
AluI AGCT 1 cut(s) 415
Alw21I GWGCWC 1 cut(s) 426
Alw26I GTCTC 1 cut(s) 219
Alw44I GTGCAC 1 cut(s) 422
AoxI GGCC 1 cut(s) 8
ApaLI GTGCAC 1 cut(s) 422
AspLEI GCGC 1 cut(s) 344
AspS9I GGNCC 2 cut(s) 295, 331
AsuHPI GGTGA 3 cut(s) 212, 398, 422
AvaII GGWCC 2 cut(s) 295, 331
BaeGI GKGCMC 1 cut(s) 426
BauI CACGAG 1 cut(s) 345
Bbv12I GWGCWC 1 cut(s) 426
BcgI CGANNNNNNTGC 2 cut(s) 11, 45
BcoDI GTCTC 1 cut(s) 219
BfoI RGCGCY 1 cut(s) 345
BmcAI AGTACT 1 cut(s) 452
Bme18I GGWCC 2 cut(s) 295, 331
BmgBI CACGTC 1 cut(s) 437
BmgT120I GGNCC 2 cut(s) 295, 331
BmiI GGNNCC 1 cut(s) 333
BmsI GCATC 3 cut(s) 19, 33, 495
Bsa29I ATCGAT 1 cut(s) 27
BsaI GGTCTC 1 cut(s) 219
BsaJI CCNNGG 1 cut(s) 84
Bse1I ACTGG 1 cut(s) 488
BseCI ATCGAT 1 cut(s) 27
BseDI CCNNGG 1 cut(s) 84
BseNI ACTGG 1 cut(s) 488
BseSI GKGCMC 1 cut(s) 426
Bsh1236I CGCG 1 cut(s) 218
BshFI GGCC 1 cut(s) 10
BshVI ATCGAT 1 cut(s) 27
BsiHKAI GWGCWC 1 cut(s) 426
BslFI GGGAC 1 cut(s) 317
BsmAI GTCTC 1 cut(s) 219
BsmFI GGGAC 1 cut(s) 317
BsnI GGCC 1 cut(s) 10
Bso31I GGTCTC 1 cut(s) 219
Bsp1286I GDGCHC 1 cut(s) 426
Bsp143I GATC 1 cut(s) 24
Bsp19I CCATGG 1 cut(s) 84
BspANI GGCC 1 cut(s) 10
BspDI ATCGAT 1 cut(s) 27
BspFNI CGCG 1 cut(s) 218
BspLI GGNNCC 1 cut(s) 333
BspTNI GGTCTC 1 cut(s) 219
BsrI ACTGG 1 cut(s) 488
BssECI CCNNGG 1 cut(s) 84
BssMI GATC 1 cut(s) 24
BssNAI GTATAC 1 cut(s) 209
BssSI CACGAG 1 cut(s) 345
BssT1I CCWWGG 1 cut(s) 84
Bst1107I GTATAC 1 cut(s) 209
Bst2BI CACGAG 1 cut(s) 345
Bst4CI ACNGT 4 cut(s) 269, 362, 455, 476
BstDEI CTNAG 1 cut(s) 399
BstDSI CCRYGG 1 cut(s) 84
BstFNI CGCG 1 cut(s) 218
BstH2I RGCGCY 1 cut(s) 345
BstHHI GCGC 1 cut(s) 344
BstKTI GATC 1 cut(s) 27
BstMAI GTCTC 1 cut(s) 219
BstMBI GATC 1 cut(s) 24
BstMWI GCNNNNNNNGC 1 cut(s) 421
BstSLI GKGCMC 1 cut(s) 426
BstUI CGCG 1 cut(s) 218
BstZ17I GTATAC 1 cut(s) 209
Bsu15I ATCGAT 1 cut(s) 27
BsuRI GGCC 1 cut(s) 10
BsuTUI ATCGAT 1 cut(s) 27
BtgI CCRYGG 1 cut(s) 84
BtrI CACGTC 1 cut(s) 437
BtsIMutI CAGTG 2 cut(s) 358, 481
CfoI GCGC 1 cut(s) 344
Cfr13I GGNCC 2 cut(s) 295, 331
ClaI ATCGAT 1 cut(s) 27
Csp6I GTAC 2 cut(s) 319, 451
CviAII CATG 2 cut(s) 67, 85
CviJI RGCY 5 cut(s) 10, 65, 236, 415, 480
CviKI_1 RGCY 5 cut(s) 10, 65, 236, 415, 480
CviQI GTAC 2 cut(s) 319, 451
DdeI CTNAG 1 cut(s) 399
DpnI GATC 1 cut(s) 26
DpnII GATC 1 cut(s) 24
Eco130I CCWWGG 1 cut(s) 84
Eco31I GGTCTC 1 cut(s) 219
Eco47I GGWCC 2 cut(s) 295, 331
Eco57I CTGAAG 1 cut(s) 510
EcoT14I CCWWGG 1 cut(s) 84
ErhI CCWWGG 1 cut(s) 84
FaeI CATG 2 cut(s) 70, 88
FaiI YATR 5 cut(s) 68, 86, 209, 368, 429
FalI AAGNNNNNCTT 2 cut(s) 399, 431
FaqI GGGAC 1 cut(s) 317
FatI CATG 2 cut(s) 66, 84
FblI GTMKAC 1 cut(s) 208
GlaI GCGC 1 cut(s) 343
HaeII RGCGCY 1 cut(s) 345
HaeIII GGCC 1 cut(s) 10
HhaI GCGC 1 cut(s) 344
Hin1II CATG 2 cut(s) 70, 88
Hin6I GCGC 1 cut(s) 342
HinP1I GCGC 1 cut(s) 342
HinfI GANTC 3 cut(s) 184, 240, 500
HphI GGTGA 3 cut(s) 212, 398, 422
Hpy166II GTNNAC 2 cut(s) 209, 424
Hpy188III TCNNGA 2 cut(s) 40, 467
Hpy8I GTNNAC 2 cut(s) 209, 424
Hpy99I CGWCG 1 cut(s) 77
HpyAV CCTTC 4 cut(s) 191, 197, 401, 425
HpyCH4III ACNGT 4 cut(s) 269, 362, 455, 476
HpyCH4IV ACGT 3 cut(s) 36, 259, 436
HpyCH4V TGCA 4 cut(s) 46, 174, 375, 424
HpyF10VI GCNNNNNNNGC 1 cut(s) 421
HpyF3I CTNAG 1 cut(s) 399
HpySE526I ACGT 3 cut(s) 36, 259, 436
Hsp92II CATG 2 cut(s) 70, 88
HspAI GCGC 1 cut(s) 342
Kzo9I GATC 1 cut(s) 24
LpnPI CCDG 3 cut(s) 53, 452, 469
LweI GCATC 3 cut(s) 19, 33, 495
MaeII ACGT 3 cut(s) 36, 259, 436
MaeIII GTNAC 1 cut(s) 305
MalI GATC 1 cut(s) 26
MboI GATC 1 cut(s) 24
MboII GAAGA 1 cut(s) 503
MfeI CAATTG 2 cut(s) 245, 310
MhlI GDGCHC 1 cut(s) 426
MluCI AATT 3 cut(s) 245, 262, 310
MlyI GAGTC 2 cut(s) 234, 509
MnlI CCTC 4 cut(s) 21, 140, 277, 286
MseI TTAA 1 cut(s) 417
MslI CAYNNNNRTG 1 cut(s) 408
MunI CAATTG 2 cut(s) 245, 310
MvnI CGCG 1 cut(s) 218
MwoI GCNNNNNNNGC 1 cut(s) 421
NcoI CCATGG 1 cut(s) 84
NdeII GATC 1 cut(s) 24
NlaIII CATG 2 cut(s) 70, 88
NlaIV GGNNCC 1 cut(s) 333
OliI CACNNNNGTG 1 cut(s) 408
PcsI WCGNNNNNNNCGW 1 cut(s) 33
PfeI GAWTC 1 cut(s) 184
PleI GAGTC 2 cut(s) 234, 508
PpsI GAGTC 2 cut(s) 234, 508
PspN4I GGNNCC 1 cut(s) 333
PspPI GGNCC 2 cut(s) 295, 331
RsaI GTAC 2 cut(s) 320, 452
RsaNI GTAC 2 cut(s) 319, 451
RseI CAYNNNNRTG 1 cut(s) 408
SaqAI TTAA 1 cut(s) 417
Sau3AI GATC 1 cut(s) 24
Sau96I GGNCC 2 cut(s) 295, 331
ScaI AGTACT 1 cut(s) 452
SchI GAGTC 2 cut(s) 234, 509
SduI GDGCHC 1 cut(s) 426
SetI ASST 7 cut(s) 39, 202, 208, 262, 412, 417, 439
SfaNI GCATC 3 cut(s) 19, 33, 495
SinI GGWCC 2 cut(s) 295, 331
SmiMI CAYNNNNRTG 1 cut(s) 408
Sse9I AATT 3 cut(s) 245, 262, 310
StyI CCWWGG 1 cut(s) 84
TaaI ACNGT 4 cut(s) 269, 362, 455, 476
TaiI ACGT 3 cut(s) 39, 262, 439
TaqI TCGA 6 cut(s) 27, 72, 90, 153, 238, 503
TasI AATT 3 cut(s) 245, 262, 310
TatI WGTACW 1 cut(s) 450
TfiI GAWTC 1 cut(s) 184
Tru1I TTAA 1 cut(s) 417
Tru9I TTAA 1 cut(s) 417
TscAI CASTG 2 cut(s) 365, 488
TspDTI ATGAA 3 cut(s) 114, 210, 444
TspRI CASTG 2 cut(s) 365, 488
VneI GTGCAC 1 cut(s) 422
VpaK11BI GGWCC 2 cut(s) 295, 331
XcmI CCANNNNNNNNNTGG 1 cut(s) 144
XmiI GTMKAC 1 cut(s) 208
ZrmI AGTACT 1 cut(s) 452
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.