Rroxscaffold_1G00061700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000181
Physical Location & Seq
Reverse (-)
83768633 .. 83776959
8327 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00061700.1

Sequence Viewer

Length: 423 bp
ATGGATGCTGTCACTTCTCCCCACAAGTGCCCCTGTAATCCTGGTAGCCAGGGTGGCAAGGCCAAAAGACTCAAGTGGACACACCTTGTGCAGGACTACGAAGGCCCCAGTTCTCCTGGCACAAAGGTGGAAGAACCAAGGATTGTCACTCCTCTCCAGAAGCGCCCCAGTAATCCTGGTATCAAGGGCGGCGTGGCCAAAAAACTCAAGTGGTCACACAATGCTATGGATTATGAAGGCTCCAGTTCTCCTGGCACGAAGACGGAAGGACCAAATATCGGTACTTCTTCTCTCCACAAGCTCCGTAGTAATACTGGCACGAAGACGGAAGGACCAAATATTGGCACTTCTTCTCTCCACAAGCTCCGTAGTAATACTAGTATGCTTTATTTTTATTTTAGGGTTTGTGTGAATATTATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

140

Amino Acids

15.18

Weight (kDa)

9.84

Isoelectric Point (pI)

60.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000181)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 341
AciI CCGC 1 cut(s) 189
AcoI YGGCCR 1 cut(s) 195
AdeI CACNNNGTG 1 cut(s) 88
AfaI GTAC 1 cut(s) 283
AfiI CCNNNNNNNGG 3 cut(s) 91, 278, 341
AhlI ACTAGT 1 cut(s) 377
AjnI CCWGG 5 cut(s) 40, 48, 115, 175, 250
AleI CACNNNNGTG 1 cut(s) 125
AluBI AGCT 2 cut(s) 301, 364
AluI AGCT 2 cut(s) 301, 364
AoxI GGCC 3 cut(s) 60, 103, 195
AspLEI GCGC 1 cut(s) 165
AspS9I GGNCC 3 cut(s) 104, 269, 332
AvaII GGWCC 2 cut(s) 269, 332
BaeGI GKGCMC 1 cut(s) 32
BalI TGGCCA 1 cut(s) 197
BbsI GAAGAC 2 cut(s) 266, 329
BciT130I CCWGG 5 cut(s) 42, 50, 117, 177, 252
BcuI ACTAGT 1 cut(s) 377
BfaI CTAG 1 cut(s) 378
BfoI RGCGCY 1 cut(s) 166
BglI GCCNNNNNGGC 1 cut(s) 54
BisI GCNGC 1 cut(s) 190
BlsI GCNGC 1 cut(s) 191
Bme1390I CCNGG 5 cut(s) 42, 50, 117, 177, 252
Bme18I GGWCC 2 cut(s) 269, 332
BmgT120I GGNCC 3 cut(s) 104, 269, 332
BmiI GGNNCC 2 cut(s) 106, 241
BmrFI CCNGG 5 cut(s) 42, 50, 117, 177, 252
BmrI ACTGGG 2 cut(s) 102, 162
BmuI ACTGGG 2 cut(s) 102, 162
BpiI GAAGAC 2 cut(s) 266, 329
BpmI CTGGAG 2 cut(s) 140, 226
BpuEI CTTGAG 2 cut(s) 56, 191
BsaJI CCNNGG 2 cut(s) 49, 137
Bsc4I CCNNNNNNNGG 3 cut(s) 91, 278, 341
Bse1I ACTGG 4 cut(s) 108, 168, 243, 319
BseBI CCWGG 5 cut(s) 42, 50, 117, 177, 252
BseDI CCNNGG 2 cut(s) 49, 137
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 3 cut(s) 91, 278, 341
BseNI ACTGG 4 cut(s) 108, 168, 243, 319
BseRI GAGGAG 1 cut(s) 141
BseSI GKGCMC 1 cut(s) 32
BsgI GTGCAG 1 cut(s) 110
BshFI GGCC 3 cut(s) 62, 105, 197
BslI CCNNNNNNNGG 3 cut(s) 91, 278, 341
BsnI GGCC 3 cut(s) 62, 105, 197
Bsp1286I GDGCHC 1 cut(s) 32
BspACI CCGC 1 cut(s) 189
BspANI GGCC 3 cut(s) 62, 105, 197
BspLI GGNNCC 2 cut(s) 106, 241
BsrI ACTGG 4 cut(s) 108, 168, 243, 319
BssECI CCNNGG 2 cut(s) 49, 137
BssT1I CCWWGG 1 cut(s) 137
Bst2UI CCWGG 5 cut(s) 42, 50, 117, 177, 252
BstENI CCTNNNNNAGG 1 cut(s) 89
BstF5I GGATG 1 cut(s) 10
BstH2I RGCGCY 1 cut(s) 166
BstHHI GCGC 1 cut(s) 165
BstMWI GCNNNNNNNGC 1 cut(s) 54
BstNI CCWGG 5 cut(s) 42, 50, 117, 177, 252
BstSCI CCNGG 5 cut(s) 40, 48, 115, 175, 250
BstSLI GKGCMC 1 cut(s) 32
BstV2I GAAGAC 2 cut(s) 266, 329
BsuRI GGCC 3 cut(s) 62, 105, 197
BtsCI GGATG 1 cut(s) 10
CfoI GCGC 1 cut(s) 165
Cfr13I GGNCC 3 cut(s) 104, 269, 332
Csp6I GTAC 1 cut(s) 282
CviJI RGCY 7 cut(s) 48, 62, 105, 197, 240, 301, 364
CviKI_1 RGCY 7 cut(s) 48, 62, 105, 197, 240, 301, 364
CviQI GTAC 1 cut(s) 282
DraIII CACNNNGTG 1 cut(s) 88
EaeI YGGCCR 1 cut(s) 195
Eco130I CCWWGG 1 cut(s) 137
Eco47I GGWCC 2 cut(s) 269, 332
EcoNI CCTNNNNNAGG 1 cut(s) 89
EcoO109I RGGNCCY 1 cut(s) 104
EcoRII CCWGG 5 cut(s) 40, 48, 115, 175, 250
EcoT14I CCWWGG 1 cut(s) 137
ErhI CCWWGG 1 cut(s) 137
FaiI YATR 3 cut(s) 227, 234, 383
Fnu4HI GCNGC 1 cut(s) 190
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 1 cut(s) 190
FspBI CTAG 1 cut(s) 378
GlaI GCGC 1 cut(s) 164
GluI GCNGC 1 cut(s) 190
GsuI CTGGAG 2 cut(s) 140, 226
HaeII RGCGCY 1 cut(s) 166
HaeIII GGCC 3 cut(s) 62, 105, 197
HhaI GCGC 1 cut(s) 165
Hin6I GCGC 1 cut(s) 163
HinP1I GCGC 1 cut(s) 163
HinfI GANTC 1 cut(s) 69
Hpy166II GTNNAC 1 cut(s) 78
Hpy188III TCNNGA 1 cut(s) 157
Hpy8I GTNNAC 1 cut(s) 78
HpyAV CCTTC 4 cut(s) 95, 230, 260, 323
HpyCH4V TGCA 1 cut(s) 91
HpyF10VI GCNNNNNNNGC 1 cut(s) 54
HspAI GCGC 1 cut(s) 163
LmnI GCTCC 3 cut(s) 245, 306, 369
MaeI CTAG 1 cut(s) 378
MaeIII GTNAC 3 cut(s) 10, 145, 213
MboII GAAGA 5 cut(s) 143, 271, 279, 334, 342
MhlI GDGCHC 1 cut(s) 32
MlsI TGGCCA 1 cut(s) 197
MluNI TGGCCA 1 cut(s) 197
MlyI GAGTC 1 cut(s) 63
MnlI CCTC 1 cut(s) 162
Mox20I TGGCCA 1 cut(s) 197
MscI TGGCCA 1 cut(s) 197
MslI CAYNNNNRTG 1 cut(s) 125
Msp20I TGGCCA 1 cut(s) 197
MspR9I CCNGG 5 cut(s) 42, 50, 117, 177, 252
MvaI CCWGG 5 cut(s) 42, 50, 117, 177, 252
MwoI GCNNNNNNNGC 1 cut(s) 54
NlaIV GGNNCC 2 cut(s) 106, 241
NmuCI GTSAC 3 cut(s) 10, 145, 213
OliI CACNNNNGTG 1 cut(s) 125
PflMI CCANNNNNTGG 1 cut(s) 341
PkrI GCNGC 1 cut(s) 191
PleI GAGTC 1 cut(s) 63
PpsI GAGTC 1 cut(s) 63
Psp6I CCWGG 5 cut(s) 40, 48, 115, 175, 250
PspGI CCWGG 5 cut(s) 40, 48, 115, 175, 250
PspN4I GGNNCC 2 cut(s) 106, 241
PspPI GGNCC 3 cut(s) 104, 269, 332
RsaI GTAC 1 cut(s) 283
RsaNI GTAC 1 cut(s) 282
RseI CAYNNNNRTG 1 cut(s) 125
SatI GCNGC 1 cut(s) 190
Sau96I GGNCC 3 cut(s) 104, 269, 332
SchI GAGTC 1 cut(s) 63
ScrFI CCNGG 5 cut(s) 42, 50, 117, 177, 252
SduI GDGCHC 1 cut(s) 32
SetI ASST 4 cut(s) 87, 129, 303, 366
SinI GGWCC 2 cut(s) 269, 332
SmiMI CAYNNNNRTG 1 cut(s) 125
SmlI CTYRAG 2 cut(s) 71, 206
SmoI CTYRAG 2 cut(s) 71, 206
SpeI ACTAGT 1 cut(s) 377
SsiI CCGC 1 cut(s) 189
SspI AATATT 2 cut(s) 340, 415
SspMI CTAG 1 cut(s) 378
StyD4I CCNGG 5 cut(s) 40, 48, 115, 175, 250
StyI CCWWGG 1 cut(s) 137
TauI GCSGC 1 cut(s) 192
TseFI GTSAC 3 cut(s) 10, 145, 213
Tsp45I GTSAC 3 cut(s) 10, 145, 213
TspDTI ATGAA 1 cut(s) 249
TspGWI ACGGA 4 cut(s) 278, 293, 341, 356
Van91I CCANNNNNTGG 1 cut(s) 341
VpaK11BI GGWCC 2 cut(s) 269, 332
XagI CCTNNNNNAGG 1 cut(s) 89
XspI CTAG 1 cut(s) 378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.