Rroxscaffold_7G00214840

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000181
Physical Location & Seq
Reverse (-)
65487171 .. 65488795
1625 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00214840.1

Sequence Viewer

Length: 453 bp
ATGGATTACCACCAGATAGGGTCTCATGGTACCGCTGAGTTTGTTGAACTAGACTCGACTCCTCTCCGGAGATTGTGGCCCTCAGATATGTACCGGATAAGTAAAGCTGGTCAAGAAGAAGACGATGACTCTTCGTCATCAGAAGACGAAGTATTTGAGCCCTGTGAGGTTTGTTTGAAGGATAATGCACACTGGAAGTTTGATTGCCCGTACCTGGTTTGTATCCCAAACGCAAAGGACGTGCCTCTTGGCAATGGCTATGATTTATTTTGTAAGAGATGTCCTAGGTTGGGTGTCCATGCAGCTCACGGCTGGAAAGGACGTGCCATTATGAAGAATTGTGGAGTTTGTCACGAGTATGGTCAACACTGGAGTTCAGGGTGCCCAAAACGTCCTAATCCAAAGCCATCTGGTCTTCTGCTAAGTAAGCTGAGAGGAGAACCTGAGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

150

Amino Acids

16.89

Weight (kDa)

5.78

Isoelectric Point (pI)

48.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000181)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 29
AccB1I GGYRCC 2 cut(s) 29, 381
AccIII TCCGGA 1 cut(s) 66
AciI CCGC 1 cut(s) 33
AfaI GTAC 3 cut(s) 31, 92, 212
AfiI CCNNNNNNNGG 2 cut(s) 214, 290
AgsI TTSAA 2 cut(s) 47, 178
AhdI GACNNNNNGTC 1 cut(s) 133
AjiI CACGTC 2 cut(s) 241, 323
AjnI CCWGG 1 cut(s) 213
AluBI AGCT 3 cut(s) 107, 305, 430
AluI AGCT 3 cut(s) 107, 305, 430
Alw26I GTCTC 1 cut(s) 27
Aor13HI TCCGGA 1 cut(s) 66
AoxI GGCC 1 cut(s) 77
ApeKI GCWGC 1 cut(s) 302
ArsI GACNNNNNNTTYG 2 cut(s) 137, 169
Asp718I GGTACC 1 cut(s) 29
AspA2I CCTAGG 1 cut(s) 284
AspS9I GGNCC 1 cut(s) 78
AvrII CCTAGG 1 cut(s) 284
AxyI CCTNAGG 1 cut(s) 444
BaeGI GKGCMC 1 cut(s) 386
BanI GGYRCC 2 cut(s) 29, 381
BanII GRGCYC 1 cut(s) 162
BauI CACGAG 1 cut(s) 353
BbsI GAAGAC 3 cut(s) 126, 150, 407
BbvI GCAGC 1 cut(s) 314
BccI CCATC 1 cut(s) 415
BceAI ACGGC 1 cut(s) 325
BciT130I CCWGG 1 cut(s) 215
BciVI GTATCC 1 cut(s) 233
BcoDI GTCTC 1 cut(s) 27
BfaI CTAG 2 cut(s) 50, 285
BfuI GTATCC 1 cut(s) 233
BisI GCNGC 1 cut(s) 303
BlnI CCTAGG 1 cut(s) 284
BlsI GCNGC 1 cut(s) 304
Bme1390I CCNGG 1 cut(s) 215
BmeRI GACNNNNNGTC 1 cut(s) 133
BmgBI CACGTC 2 cut(s) 241, 323
BmgT120I GGNCC 1 cut(s) 78
BmiI GGNNCC 2 cut(s) 31, 383
BmrFI CCNGG 1 cut(s) 215
BpiI GAAGAC 3 cut(s) 126, 150, 407
BpmI CTGGAG 1 cut(s) 391
BsaI GGTCTC 1 cut(s) 27
BsaJI CCNNGG 1 cut(s) 284
BsaWI WCCGGW 2 cut(s) 66, 93
Bsc4I CCNNNNNNNGG 2 cut(s) 214, 290
Bse1I ACTGG 2 cut(s) 197, 374
Bse21I CCTNAGG 1 cut(s) 444
Bse3DI GCAATG 1 cut(s) 259
BseAI TCCGGA 1 cut(s) 66
BseBI CCWGG 1 cut(s) 215
BseDI CCNNGG 1 cut(s) 284
BseLI CCNNNNNNNGG 2 cut(s) 214, 290
BseMI GCAATG 1 cut(s) 259
BseMII CTCAG 4 cut(s) 27, 96, 422, 435
BseNI ACTGG 2 cut(s) 197, 374
BseRI GAGGAG 2 cut(s) 51, 450
BseSI GKGCMC 1 cut(s) 386
BseXI GCAGC 1 cut(s) 314
BshFI GGCC 1 cut(s) 79
BshNI GGYRCC 2 cut(s) 29, 381
BsiSI CCGG 2 cut(s) 67, 94
BslI CCNNNNNNNGG 2 cut(s) 214, 290
BsmAI GTCTC 1 cut(s) 27
BsnI GGCC 1 cut(s) 79
Bso31I GGTCTC 1 cut(s) 27
Bsp1286I GDGCHC 2 cut(s) 162, 386
Bsp13I TCCGGA 1 cut(s) 66
BspACI CCGC 1 cut(s) 33
BspANI GGCC 1 cut(s) 79
BspCNI CTCAG 4 cut(s) 28, 95, 423, 436
BspEI TCCGGA 1 cut(s) 66
BspLI GGNNCC 2 cut(s) 31, 383
BspT107I GGYRCC 2 cut(s) 29, 381
BspTNI GGTCTC 1 cut(s) 27
BsrDI GCAATG 1 cut(s) 259
BsrI ACTGG 2 cut(s) 197, 374
BssECI CCNNGG 1 cut(s) 284
BssSI CACGAG 1 cut(s) 353
BssT1I CCWWGG 1 cut(s) 284
Bst2BI CACGAG 1 cut(s) 353
Bst2UI CCWGG 1 cut(s) 215
Bst6I CTCTTC 1 cut(s) 136
BstDEI CTNAG 5 cut(s) 36, 82, 422, 431, 444
BstMAI GTCTC 1 cut(s) 27
BstMWI GCNNNNNNNGC 1 cut(s) 427
BstNI CCWGG 1 cut(s) 215
BstSCI CCNGG 1 cut(s) 213
BstSLI GKGCMC 1 cut(s) 386
BstV1I GCAGC 1 cut(s) 314
BstV2I GAAGAC 3 cut(s) 126, 150, 407
Bsu36I CCTNAGG 1 cut(s) 444
BsuI GTATCC 1 cut(s) 233
BsuRI GGCC 1 cut(s) 79
BtrI CACGTC 2 cut(s) 241, 323
BtsIMutI CAGTG 2 cut(s) 190, 367
Cfr13I GGNCC 1 cut(s) 78
CsiI ACCWGGT 1 cut(s) 213
Csp6I GTAC 3 cut(s) 30, 91, 211
CviAII CATG 2 cut(s) 26, 299
CviJI RGCY 8 cut(s) 79, 107, 160, 258, 305, 312, 406, 430
CviKI_1 RGCY 8 cut(s) 79, 107, 160, 258, 305, 312, 406, 430
CviQI GTAC 3 cut(s) 30, 91, 211
DdeI CTNAG 5 cut(s) 36, 82, 422, 431, 444
DriI GACNNNNNGTC 1 cut(s) 133
Eam1104I CTCTTC 1 cut(s) 136
Eam1105I GACNNNNNGTC 1 cut(s) 133
EarI CTCTTC 1 cut(s) 136
Eco130I CCWWGG 1 cut(s) 284
Eco24I GRGCYC 1 cut(s) 162
Eco31I GGTCTC 1 cut(s) 27
Eco81I CCTNAGG 1 cut(s) 444
EcoRII CCWGG 1 cut(s) 213
EcoT14I CCWWGG 1 cut(s) 284
EcoT38I GRGCYC 1 cut(s) 162
ErhI CCWWGG 1 cut(s) 284
FaeI CATG 2 cut(s) 29, 302
FaiI YATR 6 cut(s) 27, 89, 261, 300, 332, 360
FatI CATG 2 cut(s) 25, 298
Fnu4HI GCNGC 1 cut(s) 303
FriOI GRGCYC 1 cut(s) 162
Fsp4HI GCNGC 1 cut(s) 303
FspBI CTAG 2 cut(s) 50, 285
GluI GCNGC 1 cut(s) 303
GsuI CTGGAG 1 cut(s) 391
HaeIII GGCC 1 cut(s) 79
HapII CCGG 2 cut(s) 67, 94
Hin1II CATG 2 cut(s) 29, 302
HincII GTYRAC 1 cut(s) 365
HindII GTYRAC 1 cut(s) 365
HinfI GANTC 3 cut(s) 53, 58, 128
HpaII CCGG 2 cut(s) 67, 94
Hpy166II GTNNAC 1 cut(s) 365
Hpy188I TCNGA 2 cut(s) 85, 142
Hpy188III TCNNGA 3 cut(s) 67, 113, 353
Hpy8I GTNNAC 1 cut(s) 365
HpyAV CCTTC 1 cut(s) 172
HpyCH4IV ACGT 3 cut(s) 240, 322, 391
HpyCH4V TGCA 2 cut(s) 188, 302
HpyF10VI GCNNNNNNNGC 1 cut(s) 427
HpyF3I CTNAG 5 cut(s) 36, 82, 422, 431, 444
HpySE526I ACGT 3 cut(s) 240, 322, 391
Hsp92II CATG 2 cut(s) 29, 302
Kpn2I TCCGGA 1 cut(s) 66
KpnI GGTACC 1 cut(s) 33
Lsp1109I GCAGC 1 cut(s) 314
MabI ACCWGGT 1 cut(s) 213
MaeI CTAG 2 cut(s) 50, 285
MaeII ACGT 3 cut(s) 240, 322, 391
MaeIII GTNAC 1 cut(s) 350
MboII GAAGA 6 cut(s) 123, 128, 131, 155, 346, 407
MhlI GDGCHC 2 cut(s) 162, 386
MluCI AATT 1 cut(s) 337
MlyI GAGTC 3 cut(s) 47, 52, 122
MnlI CCTC 6 cut(s) 72, 91, 160, 255, 428, 439
MroI TCCGGA 1 cut(s) 66
MseI TTAA 1 cut(s) 451
MslI CAYNNNNRTG 1 cut(s) 357
MspA1I CMGCKG 1 cut(s) 35
MspI CCGG 2 cut(s) 67, 94
MspR9I CCNGG 1 cut(s) 215
MvaI CCWGG 1 cut(s) 215
MwoI GCNNNNNNNGC 1 cut(s) 427
NlaIII CATG 2 cut(s) 29, 302
NlaIV GGNNCC 2 cut(s) 31, 383
NmuCI GTSAC 1 cut(s) 350
PcsI WCGNNNNNNNCGW 1 cut(s) 237
PkrI GCNGC 1 cut(s) 304
PleI GAGTC 3 cut(s) 47, 52, 122
PpsI GAGTC 3 cut(s) 47, 52, 122
Psp6I CCWGG 1 cut(s) 213
PspGI CCWGG 1 cut(s) 213
PspN4I GGNNCC 2 cut(s) 31, 383
PspPI GGNCC 1 cut(s) 78
RsaI GTAC 3 cut(s) 31, 92, 212
RsaNI GTAC 3 cut(s) 30, 91, 211
RseI CAYNNNNRTG 1 cut(s) 357
SaqAI TTAA 1 cut(s) 451
SatI GCNGC 1 cut(s) 303
Sau96I GGNCC 1 cut(s) 78
SchI GAGTC 3 cut(s) 47, 52, 122
ScrFI CCNGG 1 cut(s) 215
SduI GDGCHC 2 cut(s) 162, 386
SexAI ACCWGGT 1 cut(s) 213
SmiMI CAYNNNNRTG 1 cut(s) 357
Sse9I AATT 1 cut(s) 337
SsiI CCGC 1 cut(s) 33
SspMI CTAG 2 cut(s) 50, 285
StyD4I CCNGG 1 cut(s) 213
StyI CCWWGG 1 cut(s) 284
TaiI ACGT 3 cut(s) 243, 325, 394
TaqI TCGA 1 cut(s) 56
TasI AATT 1 cut(s) 337
Tru1I TTAA 1 cut(s) 451
Tru9I TTAA 1 cut(s) 451
TscAI CASTG 2 cut(s) 197, 374
TseFI GTSAC 1 cut(s) 350
TseI GCWGC 1 cut(s) 302
Tsp45I GTSAC 1 cut(s) 350
TspDTI ATGAA 1 cut(s) 347
TspRI CASTG 2 cut(s) 197, 374
XmaJI CCTAGG 1 cut(s) 284
XspI CTAG 2 cut(s) 50, 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.