FvH4_4g04530

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000181
Physical Location & Seq
Forward (+)
3871691 .. 3872711
1021 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g04530.t1

Sequence Viewer

Length: 432 bp
ATGTCTCTCGATATACCATTCATCTTCGATGAAGATCTGAAGCCCCGATCGGGAGGGATGCATGTGGAAGACCCAGAGACGGATGGATCAGAAGAAGTGAAAATGAAAGATTGCAGAGTTTGTACGAAGGAGAACGTGGATCACATGTCATATGAATGCCCTTACTTGGAGTGTATTCCAGATCCCAAGGACACACCTGTTGGGGAGGCCTATATGATAGTTTGCGCCCACTGCGGTTTGTCGAAACATGGGCACCAGGATGGAACCTGGCAAGGACGCGCGATATTTTATTTTCGTAAGTCTAGTTTATTCGTTCGACAGCCTGATGATGCTAACGACCAAGTTGTGGGGGAACATCATGCTACTTCGGAAACAATGGATCCTTGTAGGATTCCATTTGGTATTCCGAAAGCCTGGTGTGGTACATCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

144

Amino Acids

16.1

Weight (kDa)

4.91

Isoelectric Point (pI)

45.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000181)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 252
AccB7I CCANNNNNTGG 1 cut(s) 346
AccII CGCG 2 cut(s) 279, 281
AciI CCGC 1 cut(s) 234
AclWI GGATC 5 cut(s) 94, 147, 176, 374, 387
AcuI CTGAAG 1 cut(s) 59
AfaI GTAC 2 cut(s) 124, 424
AfiI CCNNNNNNNGG 4 cut(s) 50, 79, 166, 346
AflIII ACRYGT 1 cut(s) 144
AjnI CCWGG 3 cut(s) 255, 266, 413
Alw26I GTCTC 2 cut(s) 9, 71
AlwI GGATC 5 cut(s) 94, 147, 176, 374, 387
AoxI GGCC 1 cut(s) 207
AspLEI GCGC 2 cut(s) 227, 281
BaeGI GKGCMC 1 cut(s) 255
BamHI GGATCC 1 cut(s) 379
BanI GGYRCC 1 cut(s) 252
BbsI GAAGAC 1 cut(s) 75
BccI CCATC 2 cut(s) 77, 254
BciT130I CCWGG 3 cut(s) 257, 268, 415
BcoDI GTCTC 2 cut(s) 9, 71
BfaI CTAG 1 cut(s) 303
BglII AGATCT 1 cut(s) 34
Bme1390I CCNGG 3 cut(s) 257, 268, 415
BmiI GGNNCC 3 cut(s) 254, 265, 381
BmrFI CCNGG 3 cut(s) 257, 268, 415
BmsI GCATC 2 cut(s) 48, 319
BpiI GAAGAC 1 cut(s) 75
BsaBI GATNNNNATC 1 cut(s) 33
BsaJI CCNNGG 1 cut(s) 186
Bsc4I CCNNNNNNNGG 4 cut(s) 50, 79, 166, 346
Bse8I GATNNNNATC 1 cut(s) 33
BseBI CCWGG 3 cut(s) 257, 268, 415
BseDI CCNNGG 1 cut(s) 186
BseGI GGATG 3 cut(s) 63, 88, 265
BseJI GATNNNNATC 1 cut(s) 33
BseLI CCNNNNNNNGG 4 cut(s) 50, 79, 166, 346
BseSI GKGCMC 1 cut(s) 255
Bsh1236I CGCG 2 cut(s) 279, 281
Bsh1285I CGRYCG 1 cut(s) 50
BshFI GGCC 1 cut(s) 209
BshNI GGYRCC 1 cut(s) 252
BsiEI CGRYCG 1 cut(s) 50
BslI CCNNNNNNNGG 4 cut(s) 50, 79, 166, 346
BsmAI GTCTC 2 cut(s) 9, 71
BsmBI CGTCTC 1 cut(s) 71
BsmI GAATGC 1 cut(s) 161
BsnI GGCC 1 cut(s) 209
Bsp1286I GDGCHC 1 cut(s) 255
Bsp143I GATC 6 cut(s) 34, 47, 86, 139, 181, 379
BspACI CCGC 1 cut(s) 234
BspANI GGCC 1 cut(s) 209
BspFNI CGCG 2 cut(s) 279, 281
BspLI GGNNCC 3 cut(s) 254, 265, 381
BspPI GGATC 5 cut(s) 94, 147, 176, 374, 387
BspT107I GGYRCC 1 cut(s) 252
BssECI CCNNGG 1 cut(s) 186
BssMI GATC 6 cut(s) 34, 47, 86, 139, 181, 379
BssT1I CCWWGG 1 cut(s) 186
Bst2UI CCWGG 3 cut(s) 257, 268, 415
BstF5I GGATG 3 cut(s) 63, 88, 265
BstFNI CGCG 2 cut(s) 279, 281
BstHHI GCGC 2 cut(s) 227, 281
BstKTI GATC 6 cut(s) 37, 50, 89, 142, 184, 382
BstMAI GTCTC 2 cut(s) 9, 71
BstMBI GATC 6 cut(s) 34, 47, 86, 139, 181, 379
BstMCI CGRYCG 1 cut(s) 50
BstMWI GCNNNNNNNGC 1 cut(s) 231
BstNI CCWGG 3 cut(s) 257, 268, 415
BstNSI RCATGY 2 cut(s) 65, 148
BstSCI CCNGG 3 cut(s) 255, 266, 413
BstSLI GKGCMC 1 cut(s) 255
BstUI CGCG 2 cut(s) 279, 281
BstV2I GAAGAC 1 cut(s) 75
BstX2I RGATCY 3 cut(s) 34, 181, 379
BstYI RGATCY 3 cut(s) 34, 181, 379
BsuRI GGCC 1 cut(s) 209
BtsCI GGATG 3 cut(s) 63, 88, 265
BtsI GCAGTG 1 cut(s) 229
BtsIMutI CAGTG 1 cut(s) 229
CfoI GCGC 2 cut(s) 227, 281
CseI GACGC 1 cut(s) 285
Csp6I GTAC 2 cut(s) 123, 423
CviAII CATG 4 cut(s) 62, 145, 248, 359
CviJI RGCY 4 cut(s) 43, 209, 322, 413
CviKI_1 RGCY 4 cut(s) 43, 209, 322, 413
CviQI GTAC 2 cut(s) 123, 423
DpnI GATC 6 cut(s) 36, 49, 88, 141, 183, 381
DpnII GATC 6 cut(s) 34, 47, 86, 139, 181, 379
Eco130I CCWWGG 1 cut(s) 186
Eco147I AGGCCT 1 cut(s) 209
Eco57I CTGAAG 1 cut(s) 59
EcoRII CCWGG 3 cut(s) 255, 266, 413
EcoT14I CCWWGG 1 cut(s) 186
EcoT22I ATGCAT 1 cut(s) 63
ErhI CCWWGG 1 cut(s) 186
Esp3I CGTCTC 1 cut(s) 71
FaeI CATG 4 cut(s) 65, 148, 251, 362
FatI CATG 4 cut(s) 61, 144, 247, 358
FauNDI CATATG 1 cut(s) 151
FokI GGATG 3 cut(s) 70, 95, 272
FspBI CTAG 1 cut(s) 303
GlaI GCGC 2 cut(s) 226, 280
HaeIII GGCC 1 cut(s) 209
HgaI GACGC 1 cut(s) 285
HhaI GCGC 2 cut(s) 227, 281
Hin1II CATG 4 cut(s) 65, 148, 251, 362
Hin6I GCGC 2 cut(s) 225, 279
HinP1I GCGC 2 cut(s) 225, 279
HinfI GANTC 1 cut(s) 391
Hpy188I TCNGA 4 cut(s) 39, 91, 370, 408
Hpy188III TCNNGA 3 cut(s) 8, 51, 179
HpyAV CCTTC 1 cut(s) 121
HpyCH4IV ACGT 1 cut(s) 135
HpyCH4V TGCA 2 cut(s) 61, 114
HpyF10VI GCNNNNNNNGC 1 cut(s) 231
HpySE526I ACGT 1 cut(s) 135
Hsp92II CATG 4 cut(s) 65, 148, 251, 362
HspAI GCGC 2 cut(s) 225, 279
Kzo9I GATC 6 cut(s) 34, 47, 86, 139, 181, 379
LweI GCATC 2 cut(s) 48, 319
MaeI CTAG 1 cut(s) 303
MaeII ACGT 1 cut(s) 135
MalI GATC 6 cut(s) 36, 49, 88, 141, 183, 381
MboI GATC 6 cut(s) 34, 47, 86, 139, 181, 379
MboII GAAGA 4 cut(s) 16, 44, 80, 104
MflI RGATCY 3 cut(s) 34, 181, 379
MhlI GDGCHC 1 cut(s) 255
MnlI CCTC 2 cut(s) 47, 199
Mph1103I ATGCAT 1 cut(s) 63
MslI CAYNNNNRTG 2 cut(s) 154, 258
MspR9I CCNGG 3 cut(s) 257, 268, 415
Mva1269I GAATGC 1 cut(s) 161
MvaI CCWGG 3 cut(s) 257, 268, 415
MvnI CGCG 2 cut(s) 279, 281
MwoI GCNNNNNNNGC 1 cut(s) 231
NdeI CATATG 1 cut(s) 151
NdeII GATC 6 cut(s) 34, 47, 86, 139, 181, 379
NlaIII CATG 4 cut(s) 65, 148, 251, 362
NlaIV GGNNCC 3 cut(s) 254, 265, 381
NsiI ATGCAT 1 cut(s) 63
NspI RCATGY 2 cut(s) 65, 148
PceI AGGCCT 1 cut(s) 209
PciI ACATGT 1 cut(s) 144
PctI GAATGC 1 cut(s) 161
PfeI GAWTC 1 cut(s) 391
PflMI CCANNNNNTGG 1 cut(s) 346
Ple19I CGATCG 1 cut(s) 50
PscI ACATGT 1 cut(s) 144
Psp6I CCWGG 3 cut(s) 255, 266, 413
PspGI CCWGG 3 cut(s) 255, 266, 413
PspN4I GGNNCC 3 cut(s) 254, 265, 381
PsuI RGATCY 3 cut(s) 34, 181, 379
PvuI CGATCG 1 cut(s) 50
RsaI GTAC 2 cut(s) 124, 424
RsaNI GTAC 2 cut(s) 123, 423
RseI CAYNNNNRTG 2 cut(s) 154, 258
Sau3AI GATC 6 cut(s) 34, 47, 86, 139, 181, 379
ScrFI CCNGG 3 cut(s) 257, 268, 415
SduI GDGCHC 1 cut(s) 255
SetI ASST 3 cut(s) 138, 199, 269
SfaNI GCATC 2 cut(s) 48, 319
SmiMI CAYNNNNRTG 2 cut(s) 154, 258
SseBI AGGCCT 1 cut(s) 209
SsiI CCGC 1 cut(s) 234
SspMI CTAG 1 cut(s) 303
StuI AGGCCT 1 cut(s) 209
StyD4I CCNGG 3 cut(s) 255, 266, 413
StyI CCWWGG 1 cut(s) 186
TaiI ACGT 1 cut(s) 138
TaqI TCGA 4 cut(s) 9, 27, 242, 316
TfiI GAWTC 1 cut(s) 391
TscAI CASTG 1 cut(s) 236
TspDTI ATGAA 4 cut(s) 10, 45, 119, 168
TspGWI ACGGA 1 cut(s) 95
TspRI CASTG 1 cut(s) 236
Van91I CCANNNNNTGG 1 cut(s) 346
XceI RCATGY 2 cut(s) 65, 148
XspI CTAG 1 cut(s) 303
Zsp2I ATGCAT 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.