Prupe.4G077500_v2.0.a1

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0000181
Physical Location & Seq
Forward (+)
3773310 .. 3775270
1961 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G077500.1

Sequence Viewer

Length: 594 bp
ATGGACCTCGTCTCATCTTTGGAGTGCCTGAAATTGGATTCCCAGTCGGAGGTGCTCCATAAGGATGGCGGGGGAAAGGACCTTTTATCACCGGATATGGTCTCCCTCAACTGCGATACGCCAATAATCGGTAGCAAGGCTGAAGAACAAAAGGCTGCAAAACAATGCCTTGAAAAACCTTCGACTTCTTTTAAACTGCACTGGAACCCTTCTACAATTCCCATTTTTGGTATCAAGGCTGATGCACCAAAGGATAAGAGTTCTATTGGTGAATGTTTGTATTGTTTAAAGGTGGGTGATCACATTTCACGATTGTGCCCTTACAAATCTGATGTCCCAAAGAATGCCATTGTTGGCAGTGGTTGTGCGGTCCTTTGCAAGGTGTGCGGCTGCCGCTTTAAAGGCTCATGTTGTGCCGAGTGTGGCATAACCCAAGGACGTGCAATCTTCATGAATTGTTCATTATGTGAGAAGCAAGGTGAACACATGAATTATGAGTGCCCGACCCTCAAGAAGAAACATTATCCTAGTTTTTGTAATTGCGACCCTTACATGGGGCTTACTGTCCCTTCTTTTTCATTTCAGAGTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

198

Amino Acids

21.45

Weight (kDa)

7.8

Isoelectric Point (pI)

49.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000181)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 69, 368, 387, 394
AcuI CTGAAG 1 cut(s) 162
AfiI CCNNNNNNNGG 7 cut(s) 34, 49, 128, 227, 379, 553, 554
AgsI TTSAA 1 cut(s) 173
AjiI CACGTC 1 cut(s) 440
AleI CACNNNNGTG 1 cut(s) 313
Alw21I GWGCWC 1 cut(s) 57
Alw26I GTCTC 2 cut(s) 16, 106
ApeKI GCWGC 2 cut(s) 155, 390
ArsI GACNNNNNNTTYG 2 cut(s) 318, 350
AspS9I GGNCC 3 cut(s) 4, 79, 370
AsuHPI GGTGA 4 cut(s) 81, 281, 308, 491
AvaII GGWCC 3 cut(s) 4, 79, 370
BaeGI GKGCMC 2 cut(s) 320, 503
Bbv12I GWGCWC 1 cut(s) 57
BbvI GCAGC 2 cut(s) 142, 377
BccI CCATC 1 cut(s) 59
BclI TGATCA 1 cut(s) 298
BcoDI GTCTC 2 cut(s) 16, 106
BfaI CTAG 1 cut(s) 528
BisI GCNGC 4 cut(s) 156, 388, 391, 394
BlsI GCNGC 4 cut(s) 157, 389, 392, 395
Bme18I GGWCC 3 cut(s) 4, 79, 370
BmgBI CACGTC 1 cut(s) 440
BmgT120I GGNCC 3 cut(s) 4, 79, 370
BmiI GGNNCC 1 cut(s) 206
BmrI ACTGGG 1 cut(s) 37
BmsI GCATC 1 cut(s) 232
BmuI ACTGGG 1 cut(s) 37
BpuEI CTTGAG 1 cut(s) 494
BsaI GGTCTC 1 cut(s) 106
BsaJI CCNNGG 1 cut(s) 433
BsaWI WCCGGW 1 cut(s) 91
Bsc4I CCNNNNNNNGG 7 cut(s) 34, 49, 128, 227, 379, 553, 554
Bse1I ACTGG 2 cut(s) 43, 206
BseDI CCNNGG 1 cut(s) 433
BseGI GGATG 1 cut(s) 70
BseLI CCNNNNNNNGG 7 cut(s) 34, 49, 128, 227, 379, 553, 554
BseNI ACTGG 2 cut(s) 43, 206
BseSI GKGCMC 2 cut(s) 320, 503
BseXI GCAGC 2 cut(s) 142, 377
BsgI GTGCAG 1 cut(s) 182
BsiHKAI GWGCWC 1 cut(s) 57
BsiSI CCGG 1 cut(s) 92
BslFI GGGAC 2 cut(s) 320, 551
BslI CCNNNNNNNGG 7 cut(s) 34, 49, 128, 227, 379, 553, 554
BsmAI GTCTC 2 cut(s) 16, 106
BsmBI CGTCTC 1 cut(s) 16
BsmFI GGGAC 2 cut(s) 320, 551
BsmI GAATGC 1 cut(s) 349
Bso31I GGTCTC 1 cut(s) 106
Bsp1286I GDGCHC 3 cut(s) 57, 320, 503
Bsp143I GATC 1 cut(s) 298
BspACI CCGC 4 cut(s) 69, 368, 387, 394
BspHI TCATGA 1 cut(s) 450
BspLI GGNNCC 1 cut(s) 206
BspTNI GGTCTC 1 cut(s) 106
BsrI ACTGG 2 cut(s) 43, 206
BssECI CCNNGG 1 cut(s) 433
BssMI GATC 1 cut(s) 298
BssT1I CCWWGG 1 cut(s) 433
Bst4CI ACNGT 1 cut(s) 565
BstAPI GCANNNNNTGC 1 cut(s) 384
BstENI CCTNNNNNAGG 1 cut(s) 377
BstF5I GGATG 1 cut(s) 70
BstKTI GATC 1 cut(s) 301
BstMAI GTCTC 2 cut(s) 16, 106
BstMBI GATC 1 cut(s) 298
BstMWI GCNNNNNNNGC 3 cut(s) 384, 393, 402
BstSLI GKGCMC 2 cut(s) 320, 503
BstV1I GCAGC 2 cut(s) 142, 377
BstXI CCANNNNNNTGG 1 cut(s) 65
BtrI CACGTC 1 cut(s) 440
BtsCI GGATG 1 cut(s) 70
BtsI GCAGTG 1 cut(s) 364
BtsIMutI CAGTG 2 cut(s) 199, 364
CciI TCATGA 1 cut(s) 450
Cfr13I GGNCC 3 cut(s) 4, 79, 370
CviAII CATG 4 cut(s) 408, 451, 487, 553
CviJI RGCY 6 cut(s) 140, 155, 239, 390, 405, 559
CviKI_1 RGCY 6 cut(s) 140, 155, 239, 390, 405, 559
DpnI GATC 1 cut(s) 300
DpnII GATC 1 cut(s) 298
DraI TTTAAA 3 cut(s) 193, 288, 400
Eco130I CCWWGG 1 cut(s) 433
Eco31I GGTCTC 1 cut(s) 106
Eco47I GGWCC 3 cut(s) 4, 79, 370
Eco57I CTGAAG 1 cut(s) 162
EcoNI CCTNNNNNAGG 1 cut(s) 377
EcoO109I RGGNCCY 1 cut(s) 79
EcoT14I CCWWGG 1 cut(s) 433
ErhI CCWWGG 1 cut(s) 433
Esp3I CGTCTC 1 cut(s) 16
FaeI CATG 4 cut(s) 411, 454, 490, 556
FaiI YATR 9 cut(s) 60, 98, 409, 428, 452, 466, 488, 495, 554
FaqI GGGAC 2 cut(s) 320, 551
FatI CATG 4 cut(s) 407, 450, 486, 552
FauI CCCGC 1 cut(s) 62
FbaI TGATCA 1 cut(s) 298
Fnu4HI GCNGC 4 cut(s) 156, 388, 391, 394
FokI GGATG 1 cut(s) 77
Fsp4HI GCNGC 4 cut(s) 156, 388, 391, 394
FspBI CTAG 1 cut(s) 528
GluI GCNGC 4 cut(s) 156, 388, 391, 394
HapII CCGG 1 cut(s) 92
Hin1II CATG 4 cut(s) 411, 454, 490, 556
HinfI GANTC 1 cut(s) 38
HpaII CCGG 1 cut(s) 92
HphI GGTGA 4 cut(s) 81, 281, 308, 491
Hpy166II GTNNAC 1 cut(s) 482
Hpy188I TCNGA 3 cut(s) 49, 331, 585
Hpy188III TCNNGA 3 cut(s) 309, 451, 511
Hpy8I GTNNAC 1 cut(s) 482
HpyAV CCTTC 3 cut(s) 189, 219, 579
HpyCH4III ACNGT 1 cut(s) 565
HpyCH4IV ACGT 1 cut(s) 439
HpyCH4V TGCA 5 cut(s) 158, 199, 245, 378, 443
HpyF10VI GCNNNNNNNGC 3 cut(s) 384, 393, 402
HpySE526I ACGT 1 cut(s) 439
Hsp92II CATG 4 cut(s) 411, 454, 490, 556
Ksp22I TGATCA 1 cut(s) 298
Kzo9I GATC 1 cut(s) 298
LmnI GCTCC 1 cut(s) 60
LpnPI CCDG 4 cut(s) 41, 56, 105, 187
Lsp1109I GCAGC 2 cut(s) 142, 377
LweI GCATC 1 cut(s) 232
MaeI CTAG 1 cut(s) 528
MaeII ACGT 1 cut(s) 439
MalI GATC 1 cut(s) 300
MboI GATC 1 cut(s) 298
MboII GAAGA 3 cut(s) 155, 439, 526
MhlI GDGCHC 3 cut(s) 57, 320, 503
MluCI AATT 5 cut(s) 32, 216, 454, 490, 538
MmeI TCCRAC 1 cut(s) 27
MnlI CCTC 4 cut(s) 17, 43, 116, 518
MseI TTAA 3 cut(s) 192, 287, 399
MslI CAYNNNNRTG 2 cut(s) 63, 313
MspI CCGG 1 cut(s) 92
Mva1269I GAATGC 1 cut(s) 349
MwoI GCNNNNNNNGC 3 cut(s) 384, 393, 402
NdeII GATC 1 cut(s) 298
NlaIII CATG 4 cut(s) 411, 454, 490, 556
NlaIV GGNNCC 1 cut(s) 206
NmeAIII GCCGAG 1 cut(s) 442
OliI CACNNNNGTG 1 cut(s) 313
PagI TCATGA 1 cut(s) 450
PctI GAATGC 1 cut(s) 349
PfeI GAWTC 1 cut(s) 38
PflFI GACNNNGTC 1 cut(s) 8
PkrI GCNGC 4 cut(s) 157, 389, 392, 395
PpuMI RGGWCCY 1 cut(s) 79
Psp5II RGGWCCY 1 cut(s) 79
PspN4I GGNNCC 1 cut(s) 206
PspPI GGNCC 3 cut(s) 4, 79, 370
PspPPI RGGWCCY 1 cut(s) 79
PsyI GACNNNGTC 1 cut(s) 8
RseI CAYNNNNRTG 2 cut(s) 63, 313
SaqAI TTAA 3 cut(s) 192, 287, 399
SatI GCNGC 4 cut(s) 156, 388, 391, 394
Sau3AI GATC 1 cut(s) 298
Sau96I GGNCC 3 cut(s) 4, 79, 370
SduI GDGCHC 3 cut(s) 57, 320, 503
SetI ASST 8 cut(s) 9, 54, 84, 181, 294, 384, 442, 481
SfaNI GCATC 1 cut(s) 232
SinI GGWCC 3 cut(s) 4, 79, 370
SmiMI CAYNNNNRTG 2 cut(s) 63, 313
SmlI CTYRAG 1 cut(s) 509
SmoI CTYRAG 1 cut(s) 509
Sse9I AATT 5 cut(s) 32, 216, 454, 490, 538
SsiI CCGC 4 cut(s) 69, 368, 387, 394
SspMI CTAG 1 cut(s) 528
StyI CCWWGG 1 cut(s) 433
TaaI ACNGT 1 cut(s) 565
TaiI ACGT 1 cut(s) 442
TaqI TCGA 1 cut(s) 182
TasI AATT 5 cut(s) 32, 216, 454, 490, 538
TauI GCSGC 2 cut(s) 390, 396
TfiI GAWTC 1 cut(s) 38
Tru1I TTAA 3 cut(s) 192, 287, 399
Tru9I TTAA 3 cut(s) 192, 287, 399
TscAI CASTG 2 cut(s) 206, 364
TseI GCWGC 2 cut(s) 155, 390
TspDTI ATGAA 5 cut(s) 439, 450, 467, 503, 567
TspRI CASTG 2 cut(s) 206, 364
Tth111I GACNNNGTC 1 cut(s) 8
VpaK11BI GGWCC 3 cut(s) 4, 79, 370
XagI CCTNNNNNAGG 1 cut(s) 377
XspI CTAG 1 cut(s) 528
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.