Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0000181

Physical Location & Seq

Genomic Coordinates Reverse (-)

7336829 .. 7348913

Gene Structure 12085 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00339030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGTTTACCAAACGTGTGGCAGGGAGTAAACATAGTCCTATCCAAATACAAGTAACATCACACTTTCAATCGAGCACTTTCAACATCCAAAAAGGACTCACTTCCGCCAACAATCCTTGTCGAGCTAAATCCGAGAGGGACTCTGCTTTTGACAAATTGGAGAGTGGGATCAAGAATGGTAGTGTTTTGTTCTATACTAGGAGCTATGAGTCGGTTTATGTTTTGGGCCGGTGTGAGGGTGATTTGAGCAACAATGATTACGGGGATTGTGCTTCCAAAAAAGCCGATTCCAAGTGTGGTGATTCGATGGTGGGGTCCATGAAAAATATGCACACGGACTCTAAAGACCGTGTGAATAGAGCATTAGCGCCCCCTTTGAAGGCAACCAAAAAACATTCTGTGCTTGCACTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0006810 GO:0008150 GO:0009505 GO:0009506 GO:0009987 GO:0010496 GO:0010497 GO:0016020 GO:0016032 GO:0030054 GO:0030312 GO:0040011 GO:0044000 GO:0044403 GO:0044419 GO:0044464 GO:0044766 GO:0046739 GO:0046794 GO:0051179 GO:0051234 GO:0051701 GO:0051704 GO:0051814 GO:0052126 GO:0052192 GO:0055044 GO:0071944 GO:1902579

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Stress-antifung

Protein Analysis

137

Amino Acids

15.0

Weight (kDa)

9.46

Isoelectric Point (pI)

35.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000181)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica	MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica	Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis	pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis	RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata	RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora	Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa	Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha	Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana	Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	105
AclWI	GGATC	1 cut(s)	176
AfiI	CCNNNNNNNGG	2 cut(s)	235, 379
AflIII	ACRYGT	1 cut(s)	13
AgsI	TTSAA	3 cut(s)	68, 82, 379
AluBI	AGCT	2 cut(s)	125, 204
AluI	AGCT	2 cut(s)	125, 204
Alw21I	GWGCWC	1 cut(s)	77
AlwI	GGATC	1 cut(s)	176
AoxI	GGCC	1 cut(s)	226
ArsI	GACNNNNNNTTYG	2 cut(s)	131, 163
AspLEI	GCGC	1 cut(s)	370
AspS9I	GGNCC	2 cut(s)	226, 315
AsuHPI	GGTGA	2 cut(s)	251, 311
AvaII	GGWCC	1 cut(s)	315
Bbv12I	GWGCWC	1 cut(s)	77
BccI	CCATC	1 cut(s)	301
BfaI	CTAG	1 cut(s)	198
BfmI	CTRYAG	1 cut(s)	410
BfoI	RGCGCY	1 cut(s)	371
Bme18I	GGWCC	1 cut(s)	315
BmgT120I	GGNCC	2 cut(s)	226, 315
BmiI	GGNNCC	1 cut(s)	316
BplI	GAGNNNNNCTC	2 cut(s)	125, 157
Bsc4I	CCNNNNNNNGG	2 cut(s)	235, 379
Bse118I	RCCGGY	1 cut(s)	228
BseGI	GGATG	1 cut(s)	84
BseLI	CCNNNNNNNGG	2 cut(s)	235, 379
BshFI	GGCC	1 cut(s)	228
BsiHKAI	GWGCWC	1 cut(s)	77
BsiSI	CCGG	1 cut(s)	229
BslFI	GGGAC	1 cut(s)	152
BslI	CCNNNNNNNGG	2 cut(s)	235, 379
BsmFI	GGGAC	1 cut(s)	152
BsnI	GGCC	1 cut(s)	228
Bsp1286I	GDGCHC	1 cut(s)	77
Bsp143I	GATC	1 cut(s)	168
BspACI	CCGC	1 cut(s)	105
BspANI	GGCC	1 cut(s)	228
BspLI	GGNNCC	1 cut(s)	316
BspPI	GGATC	1 cut(s)	176
BsrFI	RCCGGY	1 cut(s)	228
BssAI	RCCGGY	1 cut(s)	228
BssMI	GATC	1 cut(s)	168
Bst4CI	ACNGT	2 cut(s)	350, 411
BstC8I	GCNNGC	1 cut(s)	405
BstF5I	GGATG	1 cut(s)	84
BstH2I	RGCGCY	1 cut(s)	371
BstHHI	GCGC	1 cut(s)	370
BstKTI	GATC	1 cut(s)	171
BstMBI	GATC	1 cut(s)	168
BstSFI	CTRYAG	1 cut(s)	410
BstXI	CCANNNNNNTGG	1 cut(s)	16
BsuRI	GGCC	1 cut(s)	228
BtsCI	GGATG	1 cut(s)	84
BtsIMutI	CAGTG	1 cut(s)	407
Cac8I	GCNNGC	1 cut(s)	405
CfoI	GCGC	1 cut(s)	370
Cfr10I	RCCGGY	1 cut(s)	228
Cfr13I	GGNCC	2 cut(s)	226, 315
CviAII	CATG	1 cut(s)	319
CviJI	RGCY	4 cut(s)	125, 204, 228, 284
CviKI_1	RGCY	4 cut(s)	125, 204, 228, 284
DpnI	GATC	1 cut(s)	170
DpnII	GATC	1 cut(s)	168
EciI	GGCGGA	1 cut(s)	94
Eco47I	GGWCC	1 cut(s)	315
FaeI	CATG	1 cut(s)	322
FaiI	YATR	6 cut(s)	33, 195, 207, 219, 320, 329
FaqI	GGGAC	1 cut(s)	152
FatI	CATG	1 cut(s)	318
FokI	GGATG	1 cut(s)	71
FspBI	CTAG	1 cut(s)	198
GlaI	GCGC	1 cut(s)	369
HaeII	RGCGCY	1 cut(s)	371
HaeIII	GGCC	1 cut(s)	228
HapII	CCGG	1 cut(s)	229
HhaI	GCGC	1 cut(s)	370
Hin1II	CATG	1 cut(s)	322
Hin6I	GCGC	1 cut(s)	368
HinP1I	GCGC	1 cut(s)	368
HinfI	GANTC	6 cut(s)	96, 140, 209, 287, 302, 338
HpaII	CCGG	1 cut(s)	229
HphI	GGTGA	2 cut(s)	251, 311
Hpy166II	GTNNAC	2 cut(s)	6, 29
Hpy188I	TCNGA	1 cut(s)	133
Hpy188III	TCNNGA	1 cut(s)	172
Hpy8I	GTNNAC	2 cut(s)	6, 29
HpyAV	CCTTC	1 cut(s)	373
HpyCH4III	ACNGT	2 cut(s)	350, 411
HpyCH4IV	ACGT	1 cut(s)	13
HpyCH4V	TGCA	2 cut(s)	331, 407
HpySE526I	ACGT	1 cut(s)	13
Hsp92II	CATG	1 cut(s)	322
HspAI	GCGC	1 cut(s)	368
Kzo9I	GATC	1 cut(s)	168
LmnI	GCTCC	1 cut(s)	201
LpnPI	CCDG	2 cut(s)	6, 242
MaeI	CTAG	1 cut(s)	198
MaeII	ACGT	1 cut(s)	13
MaeIII	GTNAC	1 cut(s)	52
MalI	GATC	1 cut(s)	170
MboI	GATC	1 cut(s)	168
MhlI	GDGCHC	1 cut(s)	77
MluCI	AATT	1 cut(s)	155
MlyI	GAGTC	4 cut(s)	90, 134, 218, 332
MnlI	CCTC	2 cut(s)	129, 229
MspI	CCGG	1 cut(s)	229
NdeII	GATC	1 cut(s)	168
NlaIII	CATG	1 cut(s)	322
NlaIV	GGNNCC	1 cut(s)	316
PfeI	GAWTC	2 cut(s)	287, 302
PleI	GAGTC	4 cut(s)	90, 134, 217, 332
PpsI	GAGTC	4 cut(s)	90, 134, 217, 332
PspN4I	GGNNCC	1 cut(s)	316
PspPI	GGNCC	2 cut(s)	226, 315
Sau3AI	GATC	1 cut(s)	168
Sau96I	GGNCC	2 cut(s)	226, 315
SchI	GAGTC	4 cut(s)	90, 134, 218, 332
SduI	GDGCHC	1 cut(s)	77
SetI	ASST	3 cut(s)	16, 127, 206
SfcI	CTRYAG	1 cut(s)	410
SinI	GGWCC	1 cut(s)	315
Sse9I	AATT	1 cut(s)	155
SsiI	CCGC	1 cut(s)	105
SspMI	CTAG	1 cut(s)	198
TaaI	ACNGT	2 cut(s)	350, 411
TaiI	ACGT	1 cut(s)	16
TaqI	TCGA	3 cut(s)	71, 121, 305
TasI	AATT	1 cut(s)	155
TfiI	GAWTC	2 cut(s)	287, 302
TscAI	CASTG	1 cut(s)	414
TspDTI	ATGAA	1 cut(s)	335
TspGWI	ACGGA	1 cut(s)	350
TspRI	CASTG	1 cut(s)	414
VpaK11BI	GGWCC	1 cut(s)	315
XspI	CTAG	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.