Prupe.6G311400_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000181
Physical Location & Seq
Forward (+)
27897633 .. 27899541
1909 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G311400.2

Sequence Viewer

Length: 468 bp
ATGGACAACGTCTCATCTCTGGTGTGCCTGAAATTGGATTCCCAGTCGGAGGTGCTCGATAAGGACGCAGCTATGGTCCCCCTCAACTGTGATACACCAATAATCGAGACTACGGCTGAAGAACCAGAGACTACAGAACCAACGGAAGAAGAACGTATTGCTTATTTTTGGAGCAAGACTGAAGAATCAATGGATGGGAAATCAAAGGATGAAGAACCAGAGGATGAAGAACCAGAGGATGAAGAAGAACCAGAGGATGAAGAAGAACCAGAGGATGAAGAATCAGAGGATGGAGAATCAGAGACTTGGAAATCAGAGGTTGAAGAATCAGAGGATGAAAAATCTAAGGATGGAAAAAGTTATGGAATCAAGTCCCAAAGAACGCAATTGTTGGTGAGAGTTGTGTGGTTGAATGTCTTGTATGTGGCTGCCTCTTTAGAGACTCATGTTGTGCTGGTTGTGGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

156

Amino Acids

17.59

Weight (kDa)

4.05

Isoelectric Point (pI)

78.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000181)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 2 cut(s) 138, 201
AfiI CCNNNNNNNGG 2 cut(s) 34, 49
AgsI TTSAA 2 cut(s) 323, 412
AluBI AGCT 1 cut(s) 71
AluI AGCT 1 cut(s) 71
Alw21I GWGCWC 1 cut(s) 57
Alw26I GTCTC 5 cut(s) 16, 101, 122, 296, 434
AoxI GGCC 1 cut(s) 462
ApeKI GCWGC 2 cut(s) 68, 428
AspS9I GGNCC 1 cut(s) 76
AsuHPI GGTGA 1 cut(s) 406
AvaII GGWCC 1 cut(s) 76
Bbv12I GWGCWC 1 cut(s) 57
BbvI GCAGC 2 cut(s) 80, 415
BccI CCATC 3 cut(s) 188, 284, 344
BceAI ACGGC 1 cut(s) 129
BcoDI GTCTC 5 cut(s) 16, 101, 122, 296, 434
BfmI CTRYAG 1 cut(s) 132
BisI GCNGC 2 cut(s) 69, 429
BlsI GCNGC 2 cut(s) 70, 430
Bme18I GGWCC 1 cut(s) 76
BmgT120I GGNCC 1 cut(s) 76
BmiI GGNNCC 1 cut(s) 78
BmrI ACTGGG 1 cut(s) 37
BmuI ACTGGG 1 cut(s) 37
Bsc4I CCNNNNNNNGG 2 cut(s) 34, 49
Bse1I ACTGG 1 cut(s) 43
BseGI GGATG 9 cut(s) 199, 214, 229, 244, 262, 280, 295, 340, 355
BseLI CCNNNNNNNGG 2 cut(s) 34, 49
BseNI ACTGG 1 cut(s) 43
BseXI GCAGC 2 cut(s) 80, 415
BshFI GGCC 1 cut(s) 464
BsiHKAI GWGCWC 1 cut(s) 57
BslFI GGGAC 2 cut(s) 62, 358
BslI CCNNNNNNNGG 2 cut(s) 34, 49
BsmAI GTCTC 5 cut(s) 16, 101, 122, 296, 434
BsmBI CGTCTC 1 cut(s) 16
BsmFI GGGAC 2 cut(s) 62, 358
BsnI GGCC 1 cut(s) 464
Bsp1286I GDGCHC 1 cut(s) 57
BspANI GGCC 1 cut(s) 464
BspLI GGNNCC 1 cut(s) 78
BsrI ACTGG 1 cut(s) 43
Bst4CI ACNGT 1 cut(s) 89
BstDEI CTNAG 1 cut(s) 345
BstF5I GGATG 9 cut(s) 199, 214, 229, 244, 262, 280, 295, 340, 355
BstMAI GTCTC 5 cut(s) 16, 101, 122, 296, 434
BstSFI CTRYAG 1 cut(s) 132
BstV1I GCAGC 2 cut(s) 80, 415
BsuRI GGCC 1 cut(s) 464
BtsCI GGATG 9 cut(s) 199, 214, 229, 244, 262, 280, 295, 340, 355
Cfr13I GGNCC 1 cut(s) 76
CseI GACGC 1 cut(s) 74
CviAII CATG 1 cut(s) 446
CviJI RGCY 4 cut(s) 71, 116, 428, 464
CviKI_1 RGCY 4 cut(s) 71, 116, 428, 464
DdeI CTNAG 1 cut(s) 345
Eco47I GGWCC 1 cut(s) 76
Eco57I CTGAAG 2 cut(s) 138, 201
Esp3I CGTCTC 1 cut(s) 16
FaeI CATG 1 cut(s) 449
FaiI YATR 4 cut(s) 74, 363, 423, 447
FaqI GGGAC 2 cut(s) 62, 358
FatI CATG 1 cut(s) 445
Fnu4HI GCNGC 2 cut(s) 69, 429
FokI GGATG 9 cut(s) 206, 221, 236, 251, 269, 287, 302, 347, 362
Fsp4HI GCNGC 2 cut(s) 69, 429
GluI GCNGC 2 cut(s) 69, 429
HaeIII GGCC 1 cut(s) 464
HgaI GACGC 1 cut(s) 74
Hin1II CATG 1 cut(s) 449
HinfI GANTC 7 cut(s) 38, 185, 281, 296, 326, 366, 442
HphI GGTGA 1 cut(s) 406
Hpy188I TCNGA 5 cut(s) 49, 286, 301, 316, 331
Hpy188III TCNNGA 1 cut(s) 106
HpyCH4III ACNGT 1 cut(s) 89
HpyCH4IV ACGT 2 cut(s) 9, 154
HpyF3I CTNAG 1 cut(s) 345
HpySE526I ACGT 2 cut(s) 9, 154
Hsp92II CATG 1 cut(s) 449
LmnI GCTCC 1 cut(s) 171
LpnPI CCDG 9 cut(s) 5, 41, 56, 138, 231, 246, 264, 282, 440
Lsp1109I GCAGC 2 cut(s) 80, 415
MaeII ACGT 2 cut(s) 9, 154
MfeI CAATTG 1 cut(s) 386
MhlI GDGCHC 1 cut(s) 57
MluCI AATT 2 cut(s) 32, 386
MlyI GAGTC 1 cut(s) 436
MmeI TCCRAC 1 cut(s) 27
MunI CAATTG 1 cut(s) 386
NlaIII CATG 1 cut(s) 449
NlaIV GGNNCC 1 cut(s) 78
PfeI GAWTC 6 cut(s) 38, 185, 281, 296, 326, 366
PflFI GACNNNGTC 1 cut(s) 8
PkrI GCNGC 2 cut(s) 70, 430
PleI GAGTC 1 cut(s) 436
PpsI GAGTC 1 cut(s) 436
PspN4I GGNNCC 1 cut(s) 78
PspPI GGNCC 1 cut(s) 76
PsyI GACNNNGTC 1 cut(s) 8
SatI GCNGC 2 cut(s) 69, 429
Sau96I GGNCC 1 cut(s) 76
SchI GAGTC 1 cut(s) 436
SduI GDGCHC 1 cut(s) 57
SetI ASST 5 cut(s) 12, 54, 73, 157, 321
SfcI CTRYAG 1 cut(s) 132
SinI GGWCC 1 cut(s) 76
Sse9I AATT 2 cut(s) 32, 386
TaaI ACNGT 1 cut(s) 89
TaiI ACGT 2 cut(s) 12, 157
TaqI TCGA 2 cut(s) 57, 105
TasI AATT 2 cut(s) 32, 386
TfiI GAWTC 6 cut(s) 38, 185, 281, 296, 326, 366
TseI GCWGC 2 cut(s) 68, 428
TspDTI ATGAA 6 cut(s) 225, 240, 255, 273, 291, 351
TspGWI ACGGA 1 cut(s) 158
Tth111I GACNNNGTC 1 cut(s) 8
VpaK11BI GGWCC 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.