FvH4_6g49870

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000181
Physical Location & Seq
Reverse (-)
37263860 .. 37264381
522 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g49870.t1

Sequence Viewer

Length: 411 bp
ATGTCTCTCGAAATCCCAGTTATCCCCGATGAGGATCCGAAGCCCCGATCGGAAAAGATGGAAGTGGAAGACGTAGATTCAGATTCAGATTCAGATTTAGATCAGGAGTCAGATTCAGATCAGGAGTCAGAAGAAAAAGTGATGCATTGCGAAGTTTGTATGAAGGACGGGGTTCACATGTCACGTGATTGCCCGTACTTGGTGATTATTCGAGATCCCAAGGACACACCTATCGGGAAGCGTTATATGATAGTTTGCCGCGACTGTAGTCTGAGGGATCATGGCCACCCTGATGGAACCTGGCTAGGACGTGCGGTGATCAATTTTTATGAGCGGACTTCCATGTTTCGAAAGCCTGGTGTGATTTATCACAAGCCTGATGGTGACGATGAAGATGACATCCTTGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

137

Amino Acids

15.66

Weight (kDa)

4.45

Isoelectric Point (pI)

56.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000181)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 334
AccII CGCG 1 cut(s) 261
AciI CCGC 3 cut(s) 259, 314, 334
AclWI GGATC 4 cut(s) 29, 42, 209, 285
AcoI YGGCCR 1 cut(s) 283
AcvI CACGTG 1 cut(s) 185
AfaI GTAC 1 cut(s) 197
AfiI CCNNNNNNNGG 2 cut(s) 31, 199
AflIII ACRYGT 1 cut(s) 177
AjiI CACGTC 1 cut(s) 311
AjnI CCWGG 2 cut(s) 299, 355
Alw26I GTCTC 1 cut(s) 9
AlwI GGATC 4 cut(s) 29, 42, 209, 285
AoxI GGCC 1 cut(s) 283
AsuHPI GGTGA 3 cut(s) 214, 328, 395
AsuII TTCGAA 1 cut(s) 349
BalI TGGCCA 1 cut(s) 285
BamHI GGATCC 1 cut(s) 34
BbrPI CACGTG 1 cut(s) 185
BbsI GAAGAC 1 cut(s) 75
BccI CCATC 3 cut(s) 52, 287, 374
BciT130I CCWGG 2 cut(s) 301, 357
BclI TGATCA 1 cut(s) 318
BcoDI GTCTC 1 cut(s) 9
BfaI CTAG 1 cut(s) 305
BfmI CTRYAG 1 cut(s) 265
BisI GCNGC 1 cut(s) 259
BlsI GCNGC 1 cut(s) 260
Bme1390I CCNGG 2 cut(s) 301, 357
BmgBI CACGTC 1 cut(s) 311
BmiI GGNNCC 2 cut(s) 36, 298
BmrFI CCNGG 2 cut(s) 301, 357
BmrI ACTGGG 1 cut(s) 11
BmsI GCATC 1 cut(s) 132
BmuI ACTGGG 1 cut(s) 11
BoxI GACNNNNGTC 1 cut(s) 267
BpiI GAAGAC 1 cut(s) 75
Bpu14I TTCGAA 1 cut(s) 349
BsaAI YACGTR 1 cut(s) 185
BsaBI GATNNNNATC 3 cut(s) 33, 99, 117
BsaJI CCNNGG 1 cut(s) 219
Bsc4I CCNNNNNNNGG 2 cut(s) 31, 199
Bse1I ACTGG 1 cut(s) 17
Bse3DI GCAATG 1 cut(s) 145
Bse8I GATNNNNATC 3 cut(s) 33, 99, 117
BseBI CCWGG 2 cut(s) 301, 357
BseDI CCNNGG 1 cut(s) 219
BseGI GGATG 1 cut(s) 399
BseJI GATNNNNATC 3 cut(s) 33, 99, 117
BseLI CCNNNNNNNGG 2 cut(s) 31, 199
BseMI GCAATG 1 cut(s) 145
BseMII CTCAG 1 cut(s) 263
BseNI ACTGG 1 cut(s) 17
Bsh1236I CGCG 1 cut(s) 261
Bsh1285I CGRYCG 1 cut(s) 50
BshFI GGCC 1 cut(s) 285
BsiEI CGRYCG 1 cut(s) 50
BslI CCNNNNNNNGG 2 cut(s) 31, 199
BsmAI GTCTC 1 cut(s) 9
BsnI GGCC 1 cut(s) 285
Bsp119I TTCGAA 1 cut(s) 349
Bsp143I GATC 7 cut(s) 34, 47, 100, 118, 214, 277, 318
BspACI CCGC 3 cut(s) 259, 314, 334
BspANI GGCC 1 cut(s) 285
BspCNI CTCAG 1 cut(s) 264
BspFNI CGCG 1 cut(s) 261
BspLI GGNNCC 2 cut(s) 36, 298
BspPI GGATC 4 cut(s) 29, 42, 209, 285
BspT104I TTCGAA 1 cut(s) 349
BsrBI CCGCTC 1 cut(s) 334
BsrDI GCAATG 1 cut(s) 145
BsrI ACTGG 1 cut(s) 17
BssECI CCNNGG 1 cut(s) 219
BssMI GATC 7 cut(s) 34, 47, 100, 118, 214, 277, 318
BssT1I CCWWGG 1 cut(s) 219
Bst2UI CCWGG 2 cut(s) 301, 357
Bst4CI ACNGT 1 cut(s) 266
BstBAI YACGTR 1 cut(s) 185
BstBI TTCGAA 1 cut(s) 349
BstDEI CTNAG 1 cut(s) 272
BstF5I GGATG 1 cut(s) 399
BstFNI CGCG 1 cut(s) 261
BstKTI GATC 7 cut(s) 37, 50, 103, 121, 217, 280, 321
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 7 cut(s) 34, 47, 100, 118, 214, 277, 318
BstMCI CGRYCG 1 cut(s) 50
BstNI CCWGG 2 cut(s) 301, 357
BstNSI RCATGY 1 cut(s) 181
BstPAI GACNNNNGTC 1 cut(s) 267
BstSCI CCNGG 2 cut(s) 299, 355
BstSFI CTRYAG 1 cut(s) 265
BstUI CGCG 1 cut(s) 261
BstV2I GAAGAC 1 cut(s) 75
BstX2I RGATCY 2 cut(s) 34, 214
BstXI CCANNNNNNTGG 1 cut(s) 293
BstYI RGATCY 2 cut(s) 34, 214
BsuRI GGCC 1 cut(s) 285
BtrI CACGTC 1 cut(s) 311
BtsCI GGATG 1 cut(s) 399
Csp6I GTAC 1 cut(s) 196
CviAII CATG 3 cut(s) 178, 281, 343
CviJI RGCY 5 cut(s) 43, 285, 304, 355, 376
CviKI_1 RGCY 5 cut(s) 43, 285, 304, 355, 376
CviQI GTAC 1 cut(s) 196
DdeI CTNAG 1 cut(s) 272
DpnI GATC 7 cut(s) 36, 49, 102, 120, 216, 279, 320
DpnII GATC 7 cut(s) 34, 47, 100, 118, 214, 277, 318
EaeI YGGCCR 1 cut(s) 283
Eco130I CCWWGG 1 cut(s) 219
Eco72I CACGTG 1 cut(s) 185
EcoRII CCWGG 2 cut(s) 299, 355
EcoT14I CCWWGG 1 cut(s) 219
EcoT22I ATGCAT 1 cut(s) 147
ErhI CCWWGG 1 cut(s) 219
FaeI CATG 3 cut(s) 181, 284, 346
FaiI YATR 7 cut(s) 161, 179, 246, 248, 282, 330, 344
FatI CATG 3 cut(s) 177, 280, 342
FbaI TGATCA 1 cut(s) 318
Fnu4HI GCNGC 1 cut(s) 259
FokI GGATG 1 cut(s) 386
Fsp4HI GCNGC 1 cut(s) 259
FspBI CTAG 1 cut(s) 305
GluI GCNGC 1 cut(s) 259
HaeIII GGCC 1 cut(s) 285
Hin1II CATG 3 cut(s) 181, 284, 346
HinfI GANTC 6 cut(s) 77, 83, 89, 107, 113, 125
HphI GGTGA 3 cut(s) 214, 328, 395
Hpy166II GTNNAC 1 cut(s) 175
Hpy188I TCNGA 9 cut(s) 39, 52, 82, 88, 94, 112, 118, 130, 273
Hpy188III TCNNGA 5 cut(s) 8, 104, 122, 212, 235
Hpy8I GTNNAC 1 cut(s) 175
HpyAV CCTTC 1 cut(s) 157
HpyCH4III ACNGT 1 cut(s) 266
HpyCH4IV ACGT 3 cut(s) 72, 184, 310
HpyCH4V TGCA 1 cut(s) 145
HpyF3I CTNAG 1 cut(s) 272
HpySE526I ACGT 3 cut(s) 72, 184, 310
Hsp92II CATG 3 cut(s) 181, 284, 346
Ksp22I TGATCA 1 cut(s) 318
Kzo9I GATC 7 cut(s) 34, 47, 100, 118, 214, 277, 318
LpnPI CCDG 9 cut(s) 30, 89, 107, 286, 303, 313, 342, 369, 390
LweI GCATC 1 cut(s) 132
MaeI CTAG 1 cut(s) 305
MaeII ACGT 3 cut(s) 72, 184, 310
MaeIII GTNAC 2 cut(s) 180, 383
MalI GATC 7 cut(s) 36, 49, 102, 120, 216, 279, 320
MbiI CCGCTC 1 cut(s) 334
MboI GATC 7 cut(s) 34, 47, 100, 118, 214, 277, 318
MboII GAAGA 3 cut(s) 80, 143, 404
MflI RGATCY 2 cut(s) 34, 214
MlsI TGGCCA 1 cut(s) 285
MluCI AATT 1 cut(s) 322
MluNI TGGCCA 1 cut(s) 285
MlyI GAGTC 2 cut(s) 116, 134
MnlI CCTC 2 cut(s) 25, 267
Mox20I TGGCCA 1 cut(s) 285
Mph1103I ATGCAT 1 cut(s) 147
MscI TGGCCA 1 cut(s) 285
MslI CAYNNNNRTG 1 cut(s) 291
Msp20I TGGCCA 1 cut(s) 285
MspR9I CCNGG 2 cut(s) 301, 357
MvaI CCWGG 2 cut(s) 301, 357
MvnI CGCG 1 cut(s) 261
NdeII GATC 7 cut(s) 34, 47, 100, 118, 214, 277, 318
NlaIII CATG 3 cut(s) 181, 284, 346
NlaIV GGNNCC 2 cut(s) 36, 298
NmuCI GTSAC 2 cut(s) 180, 383
NsiI ATGCAT 1 cut(s) 147
NspI RCATGY 1 cut(s) 181
NspV TTCGAA 1 cut(s) 349
PciI ACATGT 1 cut(s) 177
PfeI GAWTC 4 cut(s) 77, 83, 89, 113
PkrI GCNGC 1 cut(s) 260
Ple19I CGATCG 1 cut(s) 50
PleI GAGTC 2 cut(s) 115, 133
PmaCI CACGTG 1 cut(s) 185
PmlI CACGTG 1 cut(s) 185
PpsI GAGTC 2 cut(s) 115, 133
Ppu21I YACGTR 1 cut(s) 185
PscI ACATGT 1 cut(s) 177
PshAI GACNNNNGTC 1 cut(s) 267
Psp6I CCWGG 2 cut(s) 299, 355
PspCI CACGTG 1 cut(s) 185
PspGI CCWGG 2 cut(s) 299, 355
PspN4I GGNNCC 2 cut(s) 36, 298
PsuI RGATCY 2 cut(s) 34, 214
PvuI CGATCG 1 cut(s) 50
RsaI GTAC 1 cut(s) 197
RsaNI GTAC 1 cut(s) 196
RseI CAYNNNNRTG 1 cut(s) 291
SatI GCNGC 1 cut(s) 259
Sau3AI GATC 7 cut(s) 34, 47, 100, 118, 214, 277, 318
SchI GAGTC 2 cut(s) 116, 134
ScrFI CCNGG 2 cut(s) 301, 357
SetI ASST 5 cut(s) 75, 187, 232, 302, 313
SfaNI GCATC 1 cut(s) 132
SfcI CTRYAG 1 cut(s) 265
SfuI TTCGAA 1 cut(s) 349
SmiMI CAYNNNNRTG 1 cut(s) 291
Sse9I AATT 1 cut(s) 322
SsiI CCGC 3 cut(s) 259, 314, 334
SspMI CTAG 1 cut(s) 305
StyD4I CCNGG 2 cut(s) 299, 355
StyI CCWWGG 1 cut(s) 219
TaaI ACNGT 1 cut(s) 266
TaiI ACGT 3 cut(s) 75, 187, 313
TaqI TCGA 3 cut(s) 9, 211, 349
TasI AATT 1 cut(s) 322
TauI GCSGC 1 cut(s) 261
TfiI GAWTC 4 cut(s) 77, 83, 89, 113
TseFI GTSAC 2 cut(s) 180, 383
Tsp45I GTSAC 2 cut(s) 180, 383
TspDTI ATGAA 2 cut(s) 176, 405
XceI RCATGY 1 cut(s) 181
XspI CTAG 1 cut(s) 305
Zsp2I ATGCAT 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.