Rorug05G0008000

Glutaredoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000181
Physical Location & Seq
Forward (+)
473429 .. 476030
2602 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0008000.1

Sequence Viewer

Length: 756 bp
ATGCGAACAACAACAATGAAGGAGTCGTTAGATAGATCAGAGTTGCGGAGAATGCAAAGAGAGCAAGAGCGCGAACGACGTCGTATCAGGGACAGGCAGAGAAGGCAGTCCATGACGGTGGAACAGAGAGAACGACATCTGGCTCGGCGTCGTAGGAACTATCAGCTCAGAAGACTGAGAGCTGAAAATGCCAAGGTGGATTTCCAATCTAATCAAATCAGCAATGAACAACATGAAGCAGTGAGTGATGTTCAAGAAGTTACTCAGGGTGAAAACTTGAGCATGCAGCCTTTGCAGTACTCCGAGTGTTTGGATGGTGTGGCTTGTAAAGGTTCTAATTTGAACGTCCAACGGTTGCGGTTGAGTCATGTAAGGCGGCTTGCACGATCGGGGAGTCGTTTAGGGTGTGAGGTTATTGCTGATCACCAAATTGGAGGAGAGGTGGTAGTAAAGGGTGATGCCAATAATACGTCTTGTTTCCAAATTGGAGATTTTGATTCTGGTAGATTGCCAAATGGACTACGTTTGAATCGTGTTAAGCGGCTTGCACGGGCAATAAATACTGCTTCGAATGAGGCTTCTGTTAATGGTCAAGTAATAGGAAAAAACATGATGGATCAGAATCATTCCCAGGGAGAAAGTCAAGGGATTAGTAATGACAGCTCTAATTTGGACAAACTATCGCTTGCAGAGGTGAAGTTGAAGGACCTAACATGGACGGATAAACACCCAGCATGGGCTAATGTTGAGAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

251

Amino Acids

28.75

Weight (kDa)

9.89

Isoelectric Point (pI)

54.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000181)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 82
AccII CGCG 1 cut(s) 72
AciI CCGC 4 cut(s) 46, 358, 376, 541
AclWI GGATC 1 cut(s) 624
AcyI GRCGYC 2 cut(s) 79, 148
AfaI GTAC 1 cut(s) 299
AfiI CCNNNNNNNGG 1 cut(s) 736
AgsI TTSAA 4 cut(s) 254, 343, 529, 703
AjnI CCWGG 1 cut(s) 630
AjuI GAANNNNNNNTTGG 2 cut(s) 185, 217
AluBI AGCT 3 cut(s) 166, 182, 663
AluI AGCT 3 cut(s) 166, 182, 663
AlwI GGATC 1 cut(s) 624
ApeKI GCWGC 1 cut(s) 286
AspLEI GCGC 1 cut(s) 72
AspS9I GGNCC 1 cut(s) 706
AsuHPI GGTGA 4 cut(s) 281, 416, 467, 706
AsuII TTCGAA 1 cut(s) 569
AvaII GGWCC 1 cut(s) 706
BbsI GAAGAC 1 cut(s) 178
BbvI GCAGC 1 cut(s) 298
BccI CCATC 2 cut(s) 308, 607
BciT130I CCWGG 1 cut(s) 632
BclI TGATCA 1 cut(s) 421
BisI GCNGC 3 cut(s) 287, 377, 542
BlsI GCNGC 3 cut(s) 288, 378, 543
BmcAI AGTACT 1 cut(s) 299
Bme1390I CCNGG 1 cut(s) 632
Bme18I GGWCC 1 cut(s) 706
BmgT120I GGNCC 1 cut(s) 706
BmrFI CCNGG 1 cut(s) 632
BmsI GCATC 1 cut(s) 448
BpiI GAAGAC 1 cut(s) 178
Bpu14I TTCGAA 1 cut(s) 569
BpuEI CTTGAG 1 cut(s) 298
BsaBI GATNNNNATC 1 cut(s) 621
BsaHI GRCGYC 2 cut(s) 79, 148
BsaJI CCNNGG 3 cut(s) 192, 630, 631
BsaXI ACNNNNNCTCC 4 cut(s) 426, 429, 456, 459
Bsc4I CCNNNNNNNGG 1 cut(s) 736
Bse3DI GCAATG 1 cut(s) 229
Bse8I GATNNNNATC 1 cut(s) 621
BseBI CCWGG 1 cut(s) 632
BseDI CCNNGG 3 cut(s) 192, 630, 631
BseGI GGATG 1 cut(s) 319
BseJI GATNNNNATC 1 cut(s) 621
BseLI CCNNNNNNNGG 1 cut(s) 736
BseMI GCAATG 1 cut(s) 229
BseMII CTCAG 3 cut(s) 167, 181, 278
BseRI GAGGAG 1 cut(s) 450
BseXI GCAGC 1 cut(s) 298
BseYI CCCAGC 1 cut(s) 730
Bsh1236I CGCG 1 cut(s) 72
Bsh1285I CGRYCG 1 cut(s) 389
BsiEI CGRYCG 1 cut(s) 389
BslFI GGGAC 1 cut(s) 104
BslI CCNNNNNNNGG 1 cut(s) 736
BsmFI GGGAC 1 cut(s) 104
BsmI GAATGC 1 cut(s) 57
Bsp119I TTCGAA 1 cut(s) 569
Bsp143I GATC 4 cut(s) 35, 386, 421, 616
BspACI CCGC 4 cut(s) 46, 358, 376, 541
BspCNI CTCAG 3 cut(s) 168, 180, 277
BspFNI CGCG 1 cut(s) 72
BspPI GGATC 1 cut(s) 624
BspT104I TTCGAA 1 cut(s) 569
BsrDI GCAATG 1 cut(s) 229
BssECI CCNNGG 3 cut(s) 192, 630, 631
BssMI GATC 4 cut(s) 35, 386, 421, 616
BssNI GRCGYC 2 cut(s) 79, 148
BssT1I CCWWGG 1 cut(s) 192
Bst2UI CCWGG 1 cut(s) 632
Bst4CI ACNGT 2 cut(s) 118, 354
BstACI GRCGYC 2 cut(s) 79, 148
BstAPI GCANNNNNTGC 1 cut(s) 292
BstBI TTCGAA 1 cut(s) 569
BstC8I GCNNGC 4 cut(s) 284, 381, 546, 687
BstDEI CTNAG 3 cut(s) 167, 176, 264
BstF5I GGATG 1 cut(s) 319
BstFNI CGCG 1 cut(s) 72
BstHHI GCGC 1 cut(s) 72
BstKTI GATC 4 cut(s) 38, 389, 424, 619
BstMBI GATC 4 cut(s) 35, 386, 421, 616
BstMCI CGRYCG 1 cut(s) 389
BstMWI GCNNNNNNNGC 5 cut(s) 52, 61, 103, 188, 292
BstNI CCWGG 1 cut(s) 632
BstNSI RCATGY 1 cut(s) 286
BstSCI CCNGG 1 cut(s) 630
BstUI CGCG 1 cut(s) 72
BstV1I GCAGC 1 cut(s) 298
BstV2I GAAGAC 1 cut(s) 178
BstXI CCANNNNNNTGG 1 cut(s) 118
BtsCI GGATG 1 cut(s) 319
BtsI GCAGTG 1 cut(s) 246
BtsIMutI CAGTG 1 cut(s) 246
Cac8I GCNNGC 4 cut(s) 284, 381, 546, 687
CfoI GCGC 1 cut(s) 72
Cfr13I GGNCC 1 cut(s) 706
CseI GACGC 1 cut(s) 137
Csp6I GTAC 1 cut(s) 298
CviAII CATG 7 cut(s) 112, 233, 283, 368, 610, 714, 735
CviQI GTAC 1 cut(s) 298
DdeI CTNAG 3 cut(s) 167, 176, 264
DpnI GATC 4 cut(s) 37, 388, 423, 618
DpnII GATC 4 cut(s) 35, 386, 421, 616
Eco130I CCWWGG 1 cut(s) 192
Eco47I GGWCC 1 cut(s) 706
EcoO109I RGGNCCY 1 cut(s) 706
EcoRII CCWGG 1 cut(s) 630
EcoT14I CCWWGG 1 cut(s) 192
ErhI CCWWGG 1 cut(s) 192
FaeI CATG 7 cut(s) 115, 236, 286, 371, 613, 717, 738
FaiI YATR 7 cut(s) 113, 234, 284, 369, 611, 715, 736
FaqI GGGAC 1 cut(s) 104
FatI CATG 7 cut(s) 111, 232, 282, 367, 609, 713, 734
FbaI TGATCA 1 cut(s) 421
Fnu4HI GCNGC 3 cut(s) 287, 377, 542
FokI GGATG 1 cut(s) 326
Fsp4HI GCNGC 3 cut(s) 287, 377, 542
GlaI GCGC 1 cut(s) 71
GluI GCNGC 3 cut(s) 287, 377, 542
GsaI CCCAGC 1 cut(s) 734
HgaI GACGC 1 cut(s) 137
HhaI GCGC 1 cut(s) 72
Hin1I GRCGYC 2 cut(s) 79, 148
Hin1II CATG 7 cut(s) 115, 236, 286, 371, 613, 717, 738
Hin6I GCGC 1 cut(s) 70
HinP1I GCGC 1 cut(s) 70
HinfI GANTC 6 cut(s) 23, 364, 394, 497, 529, 622
HphI GGTGA 4 cut(s) 281, 416, 467, 706
Hpy188I TCNGA 4 cut(s) 40, 170, 304, 621
Hpy188III TCNNGA 1 cut(s) 254
Hpy99I CGWCG 3 cut(s) 81, 84, 153
HpyAV CCTTC 3 cut(s) 13, 96, 697
HpyCH4III ACNGT 2 cut(s) 118, 354
HpyCH4IV ACGT 4 cut(s) 79, 345, 470, 523
HpyCH4V TGCA 6 cut(s) 55, 286, 295, 383, 548, 689
HpyF10VI GCNNNNNNNGC 5 cut(s) 52, 61, 103, 188, 292
HpyF3I CTNAG 3 cut(s) 167, 176, 264
HpySE526I ACGT 4 cut(s) 79, 345, 470, 523
Hsp92I GRCGYC 2 cut(s) 79, 148
Hsp92II CATG 7 cut(s) 115, 236, 286, 371, 613, 717, 738
HspAI GCGC 1 cut(s) 70
Ksp22I TGATCA 1 cut(s) 421
Kzo9I GATC 4 cut(s) 35, 386, 421, 616
LpnPI CCDG 8 cut(s) 73, 79, 125, 251, 486, 617, 644, 744
Lsp1109I GCAGC 1 cut(s) 298
LweI GCATC 1 cut(s) 448
MaeII ACGT 4 cut(s) 79, 345, 470, 523
MaeIII GTNAC 1 cut(s) 259
MalI GATC 4 cut(s) 37, 388, 423, 618
MboI GATC 4 cut(s) 35, 386, 421, 616
MboII GAAGA 1 cut(s) 183
MluCI AATT 4 cut(s) 337, 429, 483, 667
MlyI GAGTC 3 cut(s) 32, 373, 403
MmeI TCCRAC 1 cut(s) 373
MnlI CCTC 5 cut(s) 403, 428, 433, 568, 685
MseI TTAA 3 cut(s) 537, 585, 754
MslI CAYNNNNRTG 1 cut(s) 116
MspR9I CCNGG 1 cut(s) 632
Mva1269I GAATGC 1 cut(s) 57
MvaI CCWGG 1 cut(s) 632
MvnI CGCG 1 cut(s) 72
MwoI GCNNNNNNNGC 5 cut(s) 52, 61, 103, 188, 292
NdeII GATC 4 cut(s) 35, 386, 421, 616
NlaIII CATG 7 cut(s) 115, 236, 286, 371, 613, 717, 738
NmeAIII GCCGAG 1 cut(s) 124
NspI RCATGY 1 cut(s) 286
NspV TTCGAA 1 cut(s) 569
PaeI GCATGC 1 cut(s) 286
PasI CCCWGGG 1 cut(s) 631
PcsI WCGNNNNNNNCGW 1 cut(s) 529
PctI GAATGC 1 cut(s) 57
PfeI GAWTC 3 cut(s) 497, 529, 622
PkrI GCNGC 3 cut(s) 288, 378, 543
Ple19I CGATCG 1 cut(s) 389
PleI GAGTC 3 cut(s) 31, 372, 402
PpsI GAGTC 3 cut(s) 31, 372, 402
PpuMI RGGWCCY 1 cut(s) 706
Psp5II RGGWCCY 1 cut(s) 706
Psp6I CCWGG 1 cut(s) 630
PspFI CCCAGC 1 cut(s) 730
PspGI CCWGG 1 cut(s) 630
PspPI GGNCC 1 cut(s) 706
PspPPI RGGWCCY 1 cut(s) 706
PvuI CGATCG 1 cut(s) 389
RsaI GTAC 1 cut(s) 299
RsaNI GTAC 1 cut(s) 298
RseI CAYNNNNRTG 1 cut(s) 116
SaqAI TTAA 3 cut(s) 537, 585, 754
SatI GCNGC 3 cut(s) 287, 377, 542
Sau3AI GATC 4 cut(s) 35, 386, 421, 616
Sau96I GGNCC 1 cut(s) 706
ScaI AGTACT 1 cut(s) 299
SchI GAGTC 3 cut(s) 32, 373, 403
ScrFI CCNGG 1 cut(s) 632
SfaNI GCATC 1 cut(s) 448
SfuI TTCGAA 1 cut(s) 569
SinI GGWCC 1 cut(s) 706
SmiMI CAYNNNNRTG 1 cut(s) 116
SmlI CTYRAG 1 cut(s) 277
SmoI CTYRAG 1 cut(s) 277
SphI GCATGC 1 cut(s) 286
Sse9I AATT 4 cut(s) 337, 429, 483, 667
SsiI CCGC 4 cut(s) 46, 358, 376, 541
StyD4I CCNGG 1 cut(s) 630
StyI CCWWGG 1 cut(s) 192
TaaI ACNGT 2 cut(s) 118, 354
TaiI ACGT 4 cut(s) 82, 348, 473, 526
TaqI TCGA 1 cut(s) 569
TasI AATT 4 cut(s) 337, 429, 483, 667
TatI WGTACW 1 cut(s) 297
TauI GCSGC 2 cut(s) 379, 544
TfiI GAWTC 3 cut(s) 497, 529, 622
Tru1I TTAA 3 cut(s) 537, 585, 754
Tru9I TTAA 3 cut(s) 537, 585, 754
TscAI CASTG 1 cut(s) 246
TseI GCWGC 1 cut(s) 286
TspDTI ATGAA 3 cut(s) 32, 240, 249
TspGWI ACGGA 1 cut(s) 734
TspRI CASTG 1 cut(s) 246
VpaK11BI GGWCC 1 cut(s) 706
XceI RCATGY 1 cut(s) 286
ZraI GACGTC 1 cut(s) 80
ZrmI AGTACT 1 cut(s) 299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.