FvH4_6g38112

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000181
Physical Location & Seq
Forward (+)
30155977 .. 30159687
3711 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g38112.t1

Sequence Viewer

Length: 618 bp
ATGTGTCTTATGGAATCAGAATTATCTAAGGATCCAAACCCGAACCAGGAAGTAGAAGAAGTGGAGGATGAAGAAAGAGAAGAAGAGGAAGAAATTGAAGAAGGAGAAGACGAAGCAGATGAAGATGAAGAATTTGAGATGTGTGATGGCTATCATATAGTTTGTGTATCCTGTAATCTGTTGGGTGGCCACTCTGATGTTCCTGGTATGGAATGTGAGGTGTGCAGTGGCAACTCTAATGGGAGGTGGGTAGGACGTGCTATGATCAAGACCTGTGGAAAGTGCAAGGCTGTTGAATCTCTGTCTGAACTTGAAGTAGAGGAAGATGATGATGATGATGATGATGATGATGTTGATGAAGAAGAAGAAGGCTACGATTTAGTTTGTGCGCACTGTAATGTTGGCGTCTCTGATACAGTTTCTGCACGATGTAAATGGTGTTCTGGCAGCCCTGAAGGAAGGTGGGAAGGACGTGCTATTCTCAAGGTTTGTTGTTACTGTCAGGGCGTACTCCACTGGACTGAAGAGTGCCCAAAGAAGGACTTATTGCCAAAACCAAAGAGTTTGTCGGAGTGTTCTGCTGAGTATTACTCTCGGTTGGCTACTAAAAAAATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

206

Amino Acids

23.01

Weight (kDa)

4.13

Isoelectric Point (pI)

63.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000181)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 390
AclWI GGATC 2 cut(s) 26, 39
AcoI YGGCCR 1 cut(s) 187
AcsI RAATTY 1 cut(s) 131
AcuI CTGAAG 2 cut(s) 474, 543
AcyI GRCGYC 1 cut(s) 405
AfaI GTAC 1 cut(s) 510
AfiI CCNNNNNNNGG 2 cut(s) 46, 538
AgsI TTSAA 3 cut(s) 98, 296, 314
AjiI CACGTC 2 cut(s) 257, 473
AjnI CCWGG 2 cut(s) 45, 202
Alw26I GTCTC 1 cut(s) 412
AlwI GGATC 2 cut(s) 26, 39
AlwNI CAGNNNCTG 1 cut(s) 422
AoxI GGCC 1 cut(s) 187
ApeKI GCWGC 1 cut(s) 447
ApoI RAATTY 1 cut(s) 131
ArsI GACNNNNNNTTYG 2 cut(s) 551, 583
AspLEI GCGC 1 cut(s) 391
BaeGI GKGCMC 1 cut(s) 533
BalI TGGCCA 1 cut(s) 189
BamHI GGATCC 1 cut(s) 31
BbsI GAAGAC 1 cut(s) 114
BbvI GCAGC 1 cut(s) 459
BccI CCATC 1 cut(s) 140
BciT130I CCWGG 2 cut(s) 47, 204
BciVI GTATCC 1 cut(s) 178
BclI TGATCA 1 cut(s) 264
BcoDI GTCTC 1 cut(s) 412
BfuI GTATCC 1 cut(s) 178
BisI GCNGC 1 cut(s) 448
BlsI GCNGC 1 cut(s) 449
Bme1390I CCNGG 2 cut(s) 47, 204
BmgBI CACGTC 2 cut(s) 257, 473
BmiI GGNNCC 1 cut(s) 33
BmrFI CCNGG 2 cut(s) 47, 204
BpiI GAAGAC 1 cut(s) 114
BplI GAGNNNNNCTC 2 cut(s) 575, 607
BpuEI CTTGAG 1 cut(s) 467
BsaBI GATNNNNATC 1 cut(s) 150
BsaHI GRCGYC 1 cut(s) 405
Bsc4I CCNNNNNNNGG 2 cut(s) 46, 538
Bse1I ACTGG 1 cut(s) 521
Bse8I GATNNNNATC 1 cut(s) 150
BseBI CCWGG 2 cut(s) 47, 204
BseGI GGATG 1 cut(s) 73
BseJI GATNNNNATC 1 cut(s) 150
BseLI CCNNNNNNNGG 2 cut(s) 46, 538
BseMII CTCAG 1 cut(s) 573
BseNI ACTGG 1 cut(s) 521
BseSI GKGCMC 1 cut(s) 533
BseXI GCAGC 1 cut(s) 459
BsgI GTGCAG 2 cut(s) 244, 408
BshFI GGCC 1 cut(s) 189
BslI CCNNNNNNNGG 2 cut(s) 46, 538
BsmAI GTCTC 1 cut(s) 412
BsmBI CGTCTC 1 cut(s) 412
BsnI GGCC 1 cut(s) 189
Bsp1286I GDGCHC 1 cut(s) 533
Bsp143I GATC 2 cut(s) 31, 264
BspANI GGCC 1 cut(s) 189
BspCNI CTCAG 1 cut(s) 574
BspLI GGNNCC 1 cut(s) 33
BspPI GGATC 2 cut(s) 26, 39
BsrI ACTGG 1 cut(s) 521
BssMI GATC 2 cut(s) 31, 264
BssNI GRCGYC 1 cut(s) 405
Bst2UI CCWGG 2 cut(s) 47, 204
Bst4CI ACNGT 3 cut(s) 395, 418, 500
Bst6I CTCTTC 2 cut(s) 78, 519
BstACI GRCGYC 1 cut(s) 405
BstDEI CTNAG 2 cut(s) 27, 582
BstF5I GGATG 1 cut(s) 73
BstHHI GCGC 1 cut(s) 391
BstKTI GATC 2 cut(s) 34, 267
BstMAI GTCTC 1 cut(s) 412
BstMBI GATC 2 cut(s) 31, 264
BstNI CCWGG 2 cut(s) 47, 204
BstSCI CCNGG 2 cut(s) 45, 202
BstSLI GKGCMC 1 cut(s) 533
BstV1I GCAGC 1 cut(s) 459
BstV2I GAAGAC 1 cut(s) 114
BstX2I RGATCY 1 cut(s) 31
BstYI RGATCY 1 cut(s) 31
BsuI GTATCC 1 cut(s) 178
BsuRI GGCC 1 cut(s) 189
BtrI CACGTC 2 cut(s) 257, 473
BtsCI GGATG 1 cut(s) 73
BtsI GCAGTG 1 cut(s) 232
BtsIMutI CAGTG 3 cut(s) 232, 391, 514
CaiI CAGNNNCTG 1 cut(s) 422
CfoI GCGC 1 cut(s) 391
CseI GACGC 1 cut(s) 394
Csp6I GTAC 1 cut(s) 509
CspCI CAANNNNNGTGG 2 cut(s) 256, 291
CviJI RGCY 6 cut(s) 150, 189, 290, 372, 450, 602
CviKI_1 RGCY 6 cut(s) 150, 189, 290, 372, 450, 602
CviQI GTAC 1 cut(s) 509
DdeI CTNAG 2 cut(s) 27, 582
DpnI GATC 2 cut(s) 33, 266
DpnII GATC 2 cut(s) 31, 264
EaeI YGGCCR 1 cut(s) 187
Eam1104I CTCTTC 2 cut(s) 78, 519
EarI CTCTTC 2 cut(s) 78, 519
Eco57I CTGAAG 2 cut(s) 474, 543
EcoRII CCWGG 2 cut(s) 45, 202
Esp3I CGTCTC 1 cut(s) 412
FaiI YATR 5 cut(s) 11, 156, 158, 209, 263
FalI AAGNNNNNCTT 2 cut(s) 527, 559
FbaI TGATCA 1 cut(s) 264
Fnu4HI GCNGC 1 cut(s) 448
FokI GGATG 1 cut(s) 80
Fsp4HI GCNGC 1 cut(s) 448
FspAI RTGCGCAY 1 cut(s) 390
FspI TGCGCA 1 cut(s) 390
GlaI GCGC 1 cut(s) 390
GluI GCNGC 1 cut(s) 448
HaeIII GGCC 1 cut(s) 189
HgaI GACGC 1 cut(s) 394
HhaI GCGC 1 cut(s) 391
Hin1I GRCGYC 1 cut(s) 405
Hin6I GCGC 1 cut(s) 389
HinP1I GCGC 1 cut(s) 389
HinfI GANTC 2 cut(s) 14, 296
Hpy188I TCNGA 5 cut(s) 19, 196, 307, 412, 571
Hpy188III TCNNGA 1 cut(s) 268
HpyAV CCTTC 6 cut(s) 95, 362, 449, 453, 461, 532
HpyCH4III ACNGT 3 cut(s) 395, 418, 500
HpyCH4IV ACGT 2 cut(s) 256, 472
HpyCH4V TGCA 3 cut(s) 225, 285, 425
HpyF3I CTNAG 2 cut(s) 27, 582
HpySE526I ACGT 2 cut(s) 256, 472
Hsp92I GRCGYC 1 cut(s) 405
HspAI GCGC 1 cut(s) 389
Ksp22I TGATCA 1 cut(s) 264
Kzo9I GATC 2 cut(s) 31, 264
Lsp1109I GCAGC 1 cut(s) 459
MaeII ACGT 2 cut(s) 256, 472
MaeIII GTNAC 1 cut(s) 494
MalI GATC 2 cut(s) 33, 266
MboI GATC 2 cut(s) 31, 264
MflI RGATCY 1 cut(s) 31
MhlI GDGCHC 1 cut(s) 533
MlsI TGGCCA 1 cut(s) 189
MluCI AATT 3 cut(s) 20, 93, 131
MluNI TGGCCA 1 cut(s) 189
MmeI TCCRAC 1 cut(s) 549
MnlI CCTC 5 cut(s) 58, 79, 211, 237, 313
Mox20I TGGCCA 1 cut(s) 189
MscI TGGCCA 1 cut(s) 189
MslI CAYNNNNRTG 2 cut(s) 195, 396
Msp20I TGGCCA 1 cut(s) 189
MspR9I CCNGG 2 cut(s) 47, 204
MvaI CCWGG 2 cut(s) 47, 204
NdeII GATC 2 cut(s) 31, 264
NlaIV GGNNCC 1 cut(s) 33
NsbI TGCGCA 1 cut(s) 390
PfeI GAWTC 2 cut(s) 14, 296
PkrI GCNGC 1 cut(s) 449
Psp6I CCWGG 2 cut(s) 45, 202
PspGI CCWGG 2 cut(s) 45, 202
PspN4I GGNNCC 1 cut(s) 33
PsrI GAACNNNNNNTAC 2 cut(s) 424, 456
PstNI CAGNNNCTG 1 cut(s) 422
PsuI RGATCY 1 cut(s) 31
RsaI GTAC 1 cut(s) 510
RsaNI GTAC 1 cut(s) 509
RseI CAYNNNNRTG 2 cut(s) 195, 396
SatI GCNGC 1 cut(s) 448
Sau3AI GATC 2 cut(s) 31, 264
ScrFI CCNGG 2 cut(s) 47, 204
SduI GDGCHC 1 cut(s) 533
SetI ASST 7 cut(s) 222, 248, 259, 275, 464, 475, 489
SmiMI CAYNNNNRTG 2 cut(s) 195, 396
SmlI CTYRAG 1 cut(s) 482
SmoI CTYRAG 1 cut(s) 482
Sse9I AATT 3 cut(s) 20, 93, 131
StyD4I CCNGG 2 cut(s) 45, 202
TaaI ACNGT 3 cut(s) 395, 418, 500
TaiI ACGT 2 cut(s) 259, 475
TasI AATT 3 cut(s) 20, 93, 131
TfiI GAWTC 2 cut(s) 14, 296
TscAI CASTG 3 cut(s) 232, 398, 521
TseI GCWGC 1 cut(s) 447
TspDTI ATGAA 4 cut(s) 84, 135, 141, 372
TspRI CASTG 3 cut(s) 232, 398, 521
XapI RAATTY 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.