RchiOBHm_Chr3g0457871

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000181
Physical Location & Seq
Reverse (-)
6783762 .. 6786252
2491 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ42460

Sequence Viewer

Length: 594 bp
ATGAGCAAGAAAGCAGGTATGGAGGTGGCGAGGTCATCGGAATGTTTCCAAAGGCAGGACCTGGCCGTCGTCCCCAAGCCTGATGACACCAAGGCGGAAGAACCAAAGGCTCGAAGGCCTTCTATGGATCCATGGCCTTATATCAGCAAGTTACCTGATGGTAGGAGGATCATAATCTCAAGGAAGAACCCACCTACCGAGCATCCTTGCGCTTATACCGAGATGCCCCCTGATGATCCTGGTCCTTTCTCTCAAAAATCAAAGCTCCGTGTCACTGGTCCGCCCATCCCTCGTGCGGCAGTCACTGGCCAAATTCCTGGTACATGTATCATTTGTTCCTTGGTGGATGAACACAGTTCAACTCGATGCCCGTACCTTAATCTTCTCCCAAAGAATGCAGCTGTTAGCAGTGGCTGTGACGTAGTTTGTACGGTTTGTCATCGTTTGTTTTCAGGGCGCTGCTGTAACCAGGACGCTGGACGTGCTGAGCTCAGGTTATGTAATAATTGTATGAGGATTGGTGACCACTGGACATCTCAGTGCCCGCAGGAGGATAGATTTTTCTCTCTGATCAGGAGAAAAGTAAAATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

197

Amino Acids

22.02

Weight (kDa)

9.01

Isoelectric Point (pI)

51.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000181)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 65
Acc36I ACCTGC 1 cut(s) 5
AciI CCGC 4 cut(s) 95, 281, 296, 545
AclWI GGATC 4 cut(s) 122, 135, 176, 230
AcoI YGGCCR 2 cut(s) 63, 307
AcsI RAATTY 2 cut(s) 312, 587
AfaI GTAC 3 cut(s) 322, 374, 430
AfiI CCNNNNNNNGG 3 cut(s) 55, 295, 550
AflIII ACRYGT 1 cut(s) 323
AgsI TTSAA 1 cut(s) 360
AjiI CACGTC 1 cut(s) 482
AjnI CCWGG 4 cut(s) 60, 238, 316, 468
AluBI AGCT 3 cut(s) 265, 401, 490
AluI AGCT 3 cut(s) 265, 401, 490
Alw21I GWGCWC 1 cut(s) 492
AlwI GGATC 4 cut(s) 122, 135, 176, 230
AlwNI CAGNNNCTG 3 cut(s) 61, 305, 414
AoxI GGCC 4 cut(s) 63, 116, 134, 307
ApeKI GCWGC 2 cut(s) 398, 459
ApoI RAATTY 2 cut(s) 312, 587
Asp700I GAANNNNTTC 1 cut(s) 118
AspLEI GCGC 2 cut(s) 212, 459
AspS9I GGNCC 3 cut(s) 58, 242, 278
AsuHPI GGTGA 1 cut(s) 533
AvaII GGWCC 3 cut(s) 58, 242, 278
BaeGI GKGCMC 1 cut(s) 545
BalI TGGCCA 1 cut(s) 309
BamHI GGATCC 1 cut(s) 127
BanII GRGCYC 1 cut(s) 492
BauI CACGAG 1 cut(s) 291
Bbv12I GWGCWC 1 cut(s) 492
BbvI GCAGC 2 cut(s) 410, 446
BccI CCATC 2 cut(s) 152, 293
BceAI ACGGC 1 cut(s) 50
BciT130I CCWGG 4 cut(s) 62, 240, 318, 470
BclI TGATCA 1 cut(s) 570
BfoI RGCGCY 1 cut(s) 460
BfuAI ACCTGC 1 cut(s) 5
BisI GCNGC 3 cut(s) 297, 399, 460
BlpI GCTNAGC 1 cut(s) 486
BlsI GCNGC 3 cut(s) 298, 400, 461
Bme1390I CCNGG 4 cut(s) 62, 240, 318, 470
Bme18I GGWCC 3 cut(s) 58, 242, 278
BmgBI CACGTC 1 cut(s) 482
BmgT120I GGNCC 3 cut(s) 58, 242, 278
BmiI GGNNCC 1 cut(s) 129
BmrFI CCNGG 4 cut(s) 62, 240, 318, 470
BmsI GCATC 3 cut(s) 211, 213, 356
Bpu10I CCTNAGC 1 cut(s) 491
Bpu1102I GCTNAGC 1 cut(s) 486
BpuEI CTTGAG 1 cut(s) 163
BsaBI GATNNNNATC 1 cut(s) 173
BsaJI CCNNGG 3 cut(s) 90, 131, 339
Bsc4I CCNNNNNNNGG 3 cut(s) 55, 295, 550
Bse1I ACTGG 3 cut(s) 280, 310, 533
Bse8I GATNNNNATC 1 cut(s) 173
BseBI CCWGG 4 cut(s) 62, 240, 318, 470
BseDI CCNNGG 3 cut(s) 90, 131, 339
BseGI GGATG 3 cut(s) 202, 285, 352
BseJI GATNNNNATC 1 cut(s) 173
BseLI CCNNNNNNNGG 3 cut(s) 55, 295, 550
BseMII CTCAG 3 cut(s) 477, 505, 551
BseNI ACTGG 3 cut(s) 280, 310, 533
BseSI GKGCMC 1 cut(s) 545
BseXI GCAGC 2 cut(s) 410, 446
BshFI GGCC 4 cut(s) 65, 118, 136, 309
BsiHKAI GWGCWC 1 cut(s) 492
BslFI GGGAC 1 cut(s) 56
BslI CCNNNNNNNGG 3 cut(s) 55, 295, 550
BsmFI GGGAC 1 cut(s) 56
BsmI GAATGC 1 cut(s) 400
BsnI GGCC 4 cut(s) 65, 118, 136, 309
Bsp1286I GDGCHC 2 cut(s) 492, 545
Bsp143I GATC 4 cut(s) 127, 168, 235, 570
Bsp1720I GCTNAGC 1 cut(s) 486
Bsp19I CCATGG 1 cut(s) 131
BspACI CCGC 4 cut(s) 95, 281, 296, 545
BspANI GGCC 4 cut(s) 65, 118, 136, 309
BspCNI CTCAG 3 cut(s) 478, 504, 550
BspLI GGNNCC 1 cut(s) 129
BspMI ACCTGC 1 cut(s) 5
BspPI GGATC 4 cut(s) 122, 135, 176, 230
BsrI ACTGG 3 cut(s) 280, 310, 533
BssECI CCNNGG 3 cut(s) 90, 131, 339
BssMI GATC 4 cut(s) 127, 168, 235, 570
BssSI CACGAG 1 cut(s) 291
BssT1I CCWWGG 3 cut(s) 90, 131, 339
Bst2BI CACGAG 1 cut(s) 291
Bst2UI CCWGG 4 cut(s) 62, 240, 318, 470
Bst4CI ACNGT 2 cut(s) 356, 433
BstC8I GCNNGC 1 cut(s) 545
BstDEI CTNAG 3 cut(s) 486, 491, 537
BstDSI CCRYGG 1 cut(s) 131
BstEII GGTNACC 1 cut(s) 521
BstF5I GGATG 3 cut(s) 202, 285, 352
BstH2I RGCGCY 1 cut(s) 460
BstHHI GCGC 2 cut(s) 212, 459
BstKTI GATC 4 cut(s) 130, 171, 238, 573
BstMBI GATC 4 cut(s) 127, 168, 235, 570
BstMWI GCNNNNNNNGC 1 cut(s) 482
BstNI CCWGG 4 cut(s) 62, 240, 318, 470
BstNSI RCATGY 1 cut(s) 327
BstPI GGTNACC 1 cut(s) 521
BstSCI CCNGG 4 cut(s) 60, 238, 316, 468
BstSLI GKGCMC 1 cut(s) 545
BstV1I GCAGC 2 cut(s) 410, 446
BstX2I RGATCY 1 cut(s) 127
BstXI CCANNNNNNTGG 2 cut(s) 317, 476
BstYI RGATCY 1 cut(s) 127
BsuRI GGCC 4 cut(s) 65, 118, 136, 309
BtgI CCRYGG 1 cut(s) 131
BtrI CACGTC 1 cut(s) 482
BtsCI GGATG 3 cut(s) 202, 285, 352
BtsI GCAGTG 1 cut(s) 415
BtsIMutI CAGTG 5 cut(s) 273, 303, 415, 526, 545
BveI ACCTGC 1 cut(s) 5
Cac8I GCNNGC 1 cut(s) 545
CaiI CAGNNNCTG 3 cut(s) 61, 305, 414
CfoI GCGC 2 cut(s) 212, 459
Cfr13I GGNCC 3 cut(s) 58, 242, 278
CseI GACGC 1 cut(s) 482
Csp6I GTAC 3 cut(s) 321, 373, 429
CviAII CATG 2 cut(s) 132, 324
CviQI GTAC 3 cut(s) 321, 373, 429
DdeI CTNAG 3 cut(s) 486, 491, 537
DpnI GATC 4 cut(s) 129, 170, 237, 572
DpnII GATC 4 cut(s) 127, 168, 235, 570
DrdI GACNNNNNNGTC 1 cut(s) 65
DseDI GACNNNNNNGTC 1 cut(s) 65
EaeI YGGCCR 2 cut(s) 63, 307
EciI GGCGGA 2 cut(s) 110, 270
Ecl136II GAGCTC 1 cut(s) 490
Eco130I CCWWGG 3 cut(s) 90, 131, 339
Eco147I AGGCCT 1 cut(s) 118
Eco24I GRGCYC 1 cut(s) 492
Eco47I GGWCC 3 cut(s) 58, 242, 278
Eco53kI GAGCTC 1 cut(s) 490
Eco91I GGTNACC 1 cut(s) 521
EcoICRI GAGCTC 1 cut(s) 490
EcoO109I RGGNCCY 1 cut(s) 58
EcoO65I GGTNACC 1 cut(s) 521
EcoRII CCWGG 4 cut(s) 60, 238, 316, 468
EcoT14I CCWWGG 3 cut(s) 90, 131, 339
EcoT38I GRGCYC 1 cut(s) 492
ErhI CCWWGG 3 cut(s) 90, 131, 339
FaeI CATG 2 cut(s) 135, 327
FaiI YATR 9 cut(s) 20, 125, 133, 141, 173, 216, 325, 499, 512
FaqI GGGAC 1 cut(s) 56
FatI CATG 2 cut(s) 131, 323
FauI CCCGC 1 cut(s) 552
FbaI TGATCA 1 cut(s) 570
Fnu4HI GCNGC 3 cut(s) 297, 399, 460
FokI GGATG 3 cut(s) 189, 272, 359
FriOI GRGCYC 1 cut(s) 492
Fsp4HI GCNGC 3 cut(s) 297, 399, 460
GlaI GCGC 2 cut(s) 211, 458
GluI GCNGC 3 cut(s) 297, 399, 460
HaeII RGCGCY 1 cut(s) 460
HaeIII GGCC 4 cut(s) 65, 118, 136, 309
HgaI GACGC 1 cut(s) 482
HhaI GCGC 2 cut(s) 212, 459
Hin1II CATG 2 cut(s) 135, 327
Hin6I GCGC 2 cut(s) 210, 457
HinP1I GCGC 2 cut(s) 210, 457
HphI GGTGA 1 cut(s) 533
Hpy188I TCNGA 2 cut(s) 40, 570
Hpy188III TCNNGA 1 cut(s) 574
Hpy99I CGWCG 1 cut(s) 71
HpyAV CCTTC 2 cut(s) 108, 129
HpyCH4III ACNGT 2 cut(s) 356, 433
HpyCH4IV ACGT 2 cut(s) 420, 481
HpyCH4V TGCA 1 cut(s) 398
HpyF10VI GCNNNNNNNGC 1 cut(s) 482
HpyF3I CTNAG 3 cut(s) 486, 491, 537
HpySE526I ACGT 2 cut(s) 420, 481
Hsp92II CATG 2 cut(s) 135, 327
HspAI GCGC 2 cut(s) 210, 457
Ksp22I TGATCA 1 cut(s) 570
Kzo9I GATC 4 cut(s) 127, 168, 235, 570
LmnI GCTCC 1 cut(s) 270
Lsp1109I GCAGC 2 cut(s) 410, 446
LweI GCATC 3 cut(s) 211, 213, 356
MaeII ACGT 2 cut(s) 420, 481
MaeIII GTNAC 6 cut(s) 150, 271, 301, 416, 464, 521
MalI GATC 4 cut(s) 129, 170, 237, 572
MboI GATC 4 cut(s) 127, 168, 235, 570
MboII GAAGA 3 cut(s) 110, 196, 374
MflI RGATCY 1 cut(s) 127
MhlI GDGCHC 2 cut(s) 492, 545
MlsI TGGCCA 1 cut(s) 309
MluCI AATT 3 cut(s) 312, 505, 587
MluNI TGGCCA 1 cut(s) 309
MnlI CCTC 6 cut(s) 16, 24, 159, 300, 507, 544
Mox20I TGGCCA 1 cut(s) 309
MroXI GAANNNNTTC 1 cut(s) 118
MscI TGGCCA 1 cut(s) 309
MseI TTAA 1 cut(s) 378
MslI CAYNNNNRTG 2 cut(s) 40, 538
Msp20I TGGCCA 1 cut(s) 309
MspA1I CMGCKG 1 cut(s) 401
MspR9I CCNGG 4 cut(s) 62, 240, 318, 470
Mva1269I GAATGC 1 cut(s) 400
MvaI CCWGG 4 cut(s) 62, 240, 318, 470
MwoI GCNNNNNNNGC 1 cut(s) 482
NcoI CCATGG 1 cut(s) 131
NdeII GATC 4 cut(s) 127, 168, 235, 570
NlaIII CATG 2 cut(s) 135, 327
NlaIV GGNNCC 1 cut(s) 129
NmuCI GTSAC 4 cut(s) 271, 301, 416, 521
NspI RCATGY 1 cut(s) 327
PceI AGGCCT 1 cut(s) 118
PciI ACATGT 1 cut(s) 323
PctI GAATGC 1 cut(s) 400
PdmI GAANNNNTTC 1 cut(s) 118
PkrI GCNGC 3 cut(s) 298, 400, 461
PpuMI RGGWCCY 1 cut(s) 58
PscI ACATGT 1 cut(s) 323
Psp124BI GAGCTC 1 cut(s) 492
Psp5II RGGWCCY 1 cut(s) 58
Psp6I CCWGG 4 cut(s) 60, 238, 316, 468
PspEI GGTNACC 1 cut(s) 521
PspGI CCWGG 4 cut(s) 60, 238, 316, 468
PspN4I GGNNCC 1 cut(s) 129
PspPI GGNCC 3 cut(s) 58, 242, 278
PspPPI RGGWCCY 1 cut(s) 58
PsrI GAACNNNNNNTAC 2 cut(s) 319, 351
PstNI CAGNNNCTG 3 cut(s) 61, 305, 414
PsuI RGATCY 1 cut(s) 127
PvuII CAGCTG 1 cut(s) 401
RsaI GTAC 3 cut(s) 322, 374, 430
RsaNI GTAC 3 cut(s) 321, 373, 429
RseI CAYNNNNRTG 2 cut(s) 40, 538
SacI GAGCTC 1 cut(s) 492
SaqAI TTAA 1 cut(s) 378
SatI GCNGC 3 cut(s) 297, 399, 460
Sau3AI GATC 4 cut(s) 127, 168, 235, 570
Sau96I GGNCC 3 cut(s) 58, 242, 278
ScrFI CCNGG 4 cut(s) 62, 240, 318, 470
SduI GDGCHC 2 cut(s) 492, 545
SfaNI GCATC 3 cut(s) 211, 213, 356
SinI GGWCC 3 cut(s) 58, 242, 278
SmiMI CAYNNNNRTG 2 cut(s) 40, 538
SmlI CTYRAG 1 cut(s) 178
SmoI CTYRAG 1 cut(s) 178
Sse9I AATT 3 cut(s) 312, 505, 587
SseBI AGGCCT 1 cut(s) 118
SsiI CCGC 4 cut(s) 95, 281, 296, 545
SstI GAGCTC 1 cut(s) 492
StuI AGGCCT 1 cut(s) 118
StyD4I CCNGG 4 cut(s) 60, 238, 316, 468
StyI CCWWGG 3 cut(s) 90, 131, 339
TaaI ACNGT 2 cut(s) 356, 433
TaiI ACGT 2 cut(s) 423, 484
TaqI TCGA 2 cut(s) 112, 364
TasI AATT 3 cut(s) 312, 505, 587
TauI GCSGC 1 cut(s) 299
Tru1I TTAA 1 cut(s) 378
Tru9I TTAA 1 cut(s) 378
TscAI CASTG 5 cut(s) 280, 310, 415, 533, 545
TseFI GTSAC 4 cut(s) 271, 301, 416, 521
TseI GCWGC 2 cut(s) 398, 459
Tsp45I GTSAC 4 cut(s) 271, 301, 416, 521
TspDTI ATGAA 1 cut(s) 363
TspGWI ACGGA 1 cut(s) 257
TspRI CASTG 5 cut(s) 280, 310, 415, 533, 545
VpaK11BI GGWCC 3 cut(s) 58, 242, 278
XapI RAATTY 2 cut(s) 312, 587
XceI RCATGY 1 cut(s) 327
XmnI GAANNNNTTC 1 cut(s) 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.