Prupe.4G043000_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0000181
Physical Location & Seq
Forward (+)
2040634 .. 2042060
1427 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G043000.1

Sequence Viewer

Length: 564 bp
ATGGACAACGTCTCATCTTTGGAGTGCCTGAAATTAGATTCCCAGTCGGAGGTGCTCTATAAGGACGGCGGCGGAAAGGACCTTTTATCTCCAGCTATGGTCCCCATCAACTGCGATACACCAATAACCGGGAGCGAGGCTGATGAATCGGAGGCTGATGATTCTGATACTGATGATTTCGAGACTAACGCACGCGATACTGACGAATCCGAGACTGACGAATCCGAGACTGACAAATCCGAGACTGACGATTCAAAGACTGATGATTCCAAGACTGAAAAACTTATTAGTCATGAATGTGGGTATTGTTTAAAGATGGGTGATCACTTTACGCAATTATGCCATTACAGGTATCATGTCCCAGAGAACGCAATTGTTGGCAAGAGGTGTGTGGTAATTTGTCATTGTTGTGGGTGCCACTTTAGAGACTCACGTTGTTCCAGATGTGGCGGAAGCGATGGATTTGCAATGACCATGTATTGTATACATTGTAGGAATTATGGTGAACACATGACTTATATGTGTCCGAACCGCGAGCCGACTCCCCACTTATGTTCCTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

188

Amino Acids

20.88

Weight (kDa)

4.56

Isoelectric Point (pI)

52.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000181)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 414
AccI GTMKAC 1 cut(s) 484
AccII CGCG 2 cut(s) 195, 534
AciI CCGC 4 cut(s) 69, 72, 450, 532
AfiI CCNNNNNNNGG 2 cut(s) 49, 128
AgsI TTSAA 1 cut(s) 255
AluBI AGCT 1 cut(s) 95
AluI AGCT 1 cut(s) 95
Alw21I GWGCWC 1 cut(s) 57
Alw26I GTCTC 6 cut(s) 16, 176, 206, 221, 236, 420
AspS9I GGNCC 2 cut(s) 79, 100
AsuC2I CCSGG 1 cut(s) 130
AsuHPI GGTGA 2 cut(s) 332, 515
AvaII GGWCC 2 cut(s) 79, 100
BanI GGYRCC 1 cut(s) 414
Bbv12I GWGCWC 1 cut(s) 57
BccI CCATC 3 cut(s) 113, 310, 452
BceAI ACGGC 1 cut(s) 82
BcgI CGANNNNNNTGC 2 cut(s) 446, 480
BclI TGATCA 1 cut(s) 322
BcnI CCSGG 1 cut(s) 130
BcoDI GTCTC 6 cut(s) 16, 176, 206, 221, 236, 420
BisI GCNGC 1 cut(s) 70
BlsI GCNGC 1 cut(s) 71
Bme1390I CCNGG 1 cut(s) 130
Bme18I GGWCC 2 cut(s) 79, 100
BmgT120I GGNCC 2 cut(s) 79, 100
BmiI GGNNCC 2 cut(s) 102, 416
BmrFI CCNGG 1 cut(s) 130
BmrI ACTGGG 1 cut(s) 37
BmuI ACTGGG 1 cut(s) 37
BpmI CTGGAG 1 cut(s) 75
BpuMI CCSGG 1 cut(s) 130
Bsc4I CCNNNNNNNGG 2 cut(s) 49, 128
Bse1I ACTGG 1 cut(s) 43
Bse3DI GCAATG 1 cut(s) 474
BseLI CCNNNNNNNGG 2 cut(s) 49, 128
BseMI GCAATG 1 cut(s) 474
BseNI ACTGG 1 cut(s) 43
Bsh1236I CGCG 2 cut(s) 195, 534
BshNI GGYRCC 1 cut(s) 414
BsiHKAI GWGCWC 1 cut(s) 57
BsiSI CCGG 1 cut(s) 129
BslFI GGGAC 2 cut(s) 86, 344
BslI CCNNNNNNNGG 2 cut(s) 49, 128
BsmAI GTCTC 6 cut(s) 16, 176, 206, 221, 236, 420
BsmBI CGTCTC 1 cut(s) 16
BsmFI GGGAC 2 cut(s) 86, 344
Bsp1286I GDGCHC 1 cut(s) 57
Bsp143I GATC 1 cut(s) 322
BspACI CCGC 4 cut(s) 69, 72, 450, 532
BspFNI CGCG 2 cut(s) 195, 534
BspHI TCATGA 1 cut(s) 292
BspLI GGNNCC 2 cut(s) 102, 416
BspT107I GGYRCC 1 cut(s) 414
BsrDI GCAATG 1 cut(s) 474
BsrI ACTGG 1 cut(s) 43
BssMI GATC 1 cut(s) 322
BssNAI GTATAC 1 cut(s) 485
Bst1107I GTATAC 1 cut(s) 485
BstC8I GCNNGC 2 cut(s) 193, 536
BstFNI CGCG 2 cut(s) 195, 534
BstKTI GATC 1 cut(s) 325
BstMAI GTCTC 6 cut(s) 16, 176, 206, 221, 236, 420
BstMBI GATC 1 cut(s) 322
BstSCI CCNGG 1 cut(s) 128
BstUI CGCG 2 cut(s) 195, 534
BstZ17I GTATAC 1 cut(s) 485
BtgZI GCGATG 1 cut(s) 471
Cac8I GCNNGC 2 cut(s) 193, 536
CciI TCATGA 1 cut(s) 292
Cfr13I GGNCC 2 cut(s) 79, 100
CviAII CATG 4 cut(s) 293, 356, 475, 511
CviJI RGCY 4 cut(s) 95, 140, 155, 538
CviKI_1 RGCY 4 cut(s) 95, 140, 155, 538
DpnI GATC 1 cut(s) 324
DpnII GATC 1 cut(s) 322
DraI TTTAAA 1 cut(s) 312
EciI GGCGGA 2 cut(s) 87, 465
Eco47I GGWCC 2 cut(s) 79, 100
EcoO109I RGGNCCY 1 cut(s) 79
Esp3I CGTCTC 1 cut(s) 16
FaeI CATG 4 cut(s) 296, 359, 478, 514
FaqI GGGAC 2 cut(s) 86, 344
FatI CATG 4 cut(s) 292, 355, 474, 510
FbaI TGATCA 1 cut(s) 322
FblI GTMKAC 1 cut(s) 484
Fnu4HI GCNGC 1 cut(s) 70
Fsp4HI GCNGC 1 cut(s) 70
GluI GCNGC 1 cut(s) 70
GsuI CTGGAG 1 cut(s) 75
HapII CCGG 1 cut(s) 129
Hin1II CATG 4 cut(s) 296, 359, 478, 514
HinfI GANTC 9 cut(s) 38, 146, 161, 206, 221, 251, 266, 428, 541
HpaII CCGG 1 cut(s) 129
HphI GGTGA 2 cut(s) 332, 515
Hpy166II GTNNAC 2 cut(s) 485, 506
Hpy188I TCNGA 7 cut(s) 49, 151, 166, 211, 226, 241, 528
Hpy188III TCNNGA 3 cut(s) 181, 293, 441
Hpy8I GTNNAC 2 cut(s) 485, 506
HpyCH4IV ACGT 2 cut(s) 9, 433
HpyCH4V TGCA 1 cut(s) 467
HpySE526I ACGT 2 cut(s) 9, 433
Hsp92II CATG 4 cut(s) 296, 359, 478, 514
Ksp22I TGATCA 1 cut(s) 322
Kzo9I GATC 1 cut(s) 322
LmnI GCTCC 1 cut(s) 132
LpnPI CCDG 7 cut(s) 41, 56, 105, 142, 334, 375, 454
MaeII ACGT 2 cut(s) 9, 433
MalI GATC 1 cut(s) 324
MboI GATC 1 cut(s) 322
MfeI CAATTG 1 cut(s) 372
MhlI GDGCHC 1 cut(s) 57
MluCI AATT 5 cut(s) 32, 335, 372, 396, 496
MlyI GAGTC 2 cut(s) 422, 535
MmeI TCCRAC 1 cut(s) 27
MnlI CCTC 4 cut(s) 43, 130, 145, 378
MseI TTAA 1 cut(s) 311
MslI CAYNNNNRTG 2 cut(s) 297, 408
MspI CCGG 1 cut(s) 129
MspR9I CCNGG 1 cut(s) 130
MunI CAATTG 1 cut(s) 372
MvnI CGCG 2 cut(s) 195, 534
NciI CCSGG 1 cut(s) 130
NdeII GATC 1 cut(s) 322
NlaIII CATG 4 cut(s) 296, 359, 478, 514
NlaIV GGNNCC 2 cut(s) 102, 416
PagI TCATGA 1 cut(s) 292
PfeI GAWTC 7 cut(s) 38, 146, 161, 206, 221, 251, 266
PflFI GACNNNGTC 1 cut(s) 8
PkrI GCNGC 1 cut(s) 71
PleI GAGTC 2 cut(s) 422, 535
PpsI GAGTC 2 cut(s) 422, 535
PpuMI RGGWCCY 1 cut(s) 79
Psp5II RGGWCCY 1 cut(s) 79
PspN4I GGNNCC 2 cut(s) 102, 416
PspPI GGNCC 2 cut(s) 79, 100
PspPPI RGGWCCY 1 cut(s) 79
PsyI GACNNNGTC 1 cut(s) 8
RseI CAYNNNNRTG 2 cut(s) 297, 408
SaqAI TTAA 1 cut(s) 311
SatI GCNGC 1 cut(s) 70
Sau3AI GATC 1 cut(s) 322
Sau96I GGNCC 2 cut(s) 79, 100
SchI GAGTC 2 cut(s) 422, 535
ScrFI CCNGG 1 cut(s) 130
SduI GDGCHC 1 cut(s) 57
SetI ASST 7 cut(s) 12, 54, 84, 97, 353, 389, 436
SinI GGWCC 2 cut(s) 79, 100
SmiMI CAYNNNNRTG 2 cut(s) 297, 408
Sse9I AATT 5 cut(s) 32, 335, 372, 396, 496
SsiI CCGC 4 cut(s) 69, 72, 450, 532
StyD4I CCNGG 1 cut(s) 128
TaiI ACGT 2 cut(s) 12, 436
TaqI TCGA 1 cut(s) 180
TasI AATT 5 cut(s) 32, 335, 372, 396, 496
TauI GCSGC 1 cut(s) 72
TfiI GAWTC 7 cut(s) 38, 146, 161, 206, 221, 251, 266
Tru1I TTAA 1 cut(s) 311
Tru9I TTAA 1 cut(s) 311
TspDTI ATGAA 2 cut(s) 159, 309
Tth111I GACNNNGTC 1 cut(s) 8
VpaK11BI GGWCC 2 cut(s) 79, 100
XmiI GTMKAC 1 cut(s) 484
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.