Rroxscaffold_2G00096590

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000181
Physical Location & Seq
Forward (+)
17909536 .. 17911390
1855 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00096590.1

Sequence Viewer

Length: 564 bp
ATGTCTCTTGTCGAATCAGGATTCTCCAAGGATCCGAACCTGAACCAGGTCCCGCCGGAGGAGGGCGACAAGATCCAGACTGATGGAAAGCACAAGGCTGCTGAAGACTCTCTTTCTCAACTTGAAGTAGAGGAAGAAGAGGAAGAAGATGAAGATGAAGATGAAGAAGAAGGAGAAGAAGAAGAAGCAGAAGAAGAATTTGAGATGTGTGATGTTTGTTTGAAGGACAAGGAACACTGGACAGATGAATGCCCATACTTGGTTCGTATCCCAAACCCAATGGAAGTAACTCTTGGCAAAGGCTATGAGTTAGTTTGTGCGCACTGTAATGTGAAGGGTGGCCACTCTGATATGGTCGGTACACAATGTAATTGGTGGAGTGGCAACCCTAATAGGAGGTGGGAAGGACGTGCTATTATCAAGGTTTGTGGTATTTGTGAGGGCGTACTCCACTGGTCTGCAGAGTGCCCAAAGAAGGACTTATTACCAAAGCCAAAGAGTCTGTTGGAGTGTGCTGCTGAGTATCGCTCTTGGTTGGCTACCAAAAAATGTCAAGCTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

187

Amino Acids

21.16

Weight (kDa)

4.45

Isoelectric Point (pI)

53.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000181)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 321
AciI CCGC 1 cut(s) 53
AclWI GGATC 3 cut(s) 26, 39, 67
AcoI YGGCCR 1 cut(s) 340
AcsI RAATTY 1 cut(s) 197
AcuI CTGAAG 1 cut(s) 123
AfaI GTAC 2 cut(s) 361, 447
AfiI CCNNNNNNNGG 5 cut(s) 46, 58, 62, 259, 475
AgsI TTSAA 2 cut(s) 125, 223
AjiI CACGTC 1 cut(s) 410
AjnI CCWGG 1 cut(s) 45
AjuI GAANNNNNNNTTGG 2 cut(s) 276, 308
AluBI AGCT 1 cut(s) 557
AluI AGCT 1 cut(s) 557
Alw26I GTCTC 1 cut(s) 9
AlwI GGATC 3 cut(s) 26, 39, 67
AoxI GGCC 1 cut(s) 340
ApeKI GCWGC 3 cut(s) 98, 515, 557
ApoI RAATTY 1 cut(s) 197
AspLEI GCGC 1 cut(s) 322
AspS9I GGNCC 1 cut(s) 49
AvaII GGWCC 1 cut(s) 49
BaeGI GKGCMC 1 cut(s) 470
BalI TGGCCA 1 cut(s) 342
BamHI GGATCC 1 cut(s) 31
BbsI GAAGAC 1 cut(s) 111
BbvI GCAGC 3 cut(s) 85, 502, 544
BccI CCATC 1 cut(s) 77
BciT130I CCWGG 1 cut(s) 47
BciVI GTATCC 1 cut(s) 278
BcoDI GTCTC 1 cut(s) 9
BfmI CTRYAG 1 cut(s) 459
BfuI GTATCC 1 cut(s) 278
BisI GCNGC 3 cut(s) 99, 516, 558
BlsI GCNGC 3 cut(s) 100, 517, 559
Bme1390I CCNGG 1 cut(s) 47
Bme18I GGWCC 1 cut(s) 49
BmgBI CACGTC 1 cut(s) 410
BmgT120I GGNCC 1 cut(s) 49
BmiI GGNNCC 2 cut(s) 33, 51
BmrFI CCNGG 1 cut(s) 47
BpiI GAAGAC 1 cut(s) 111
BplI GAGNNNNNCTC 2 cut(s) 512, 544
BsaJI CCNNGG 1 cut(s) 27
Bsc4I CCNNNNNNNGG 5 cut(s) 46, 58, 62, 259, 475
Bse1I ACTGG 2 cut(s) 242, 458
BseBI CCWGG 1 cut(s) 47
BseDI CCNNGG 1 cut(s) 27
BseLI CCNNNNNNNGG 5 cut(s) 46, 58, 62, 259, 475
BseMII CTCAG 1 cut(s) 510
BseNI ACTGG 2 cut(s) 242, 458
BseRI GAGGAG 1 cut(s) 74
BseSI GKGCMC 1 cut(s) 470
BseXI GCAGC 3 cut(s) 85, 502, 544
BshFI GGCC 1 cut(s) 342
BsiSI CCGG 1 cut(s) 56
BslFI GGGAC 1 cut(s) 35
BslI CCNNNNNNNGG 5 cut(s) 46, 58, 62, 259, 475
BsmAI GTCTC 1 cut(s) 9
BsmFI GGGAC 1 cut(s) 35
BsmI GAATGC 1 cut(s) 254
BsnI GGCC 1 cut(s) 342
Bsp1286I GDGCHC 1 cut(s) 470
Bsp143I GATC 2 cut(s) 31, 72
BspACI CCGC 1 cut(s) 53
BspANI GGCC 1 cut(s) 342
BspCNI CTCAG 1 cut(s) 511
BspLI GGNNCC 2 cut(s) 33, 51
BspMAI CTGCAG 1 cut(s) 463
BspPI GGATC 3 cut(s) 26, 39, 67
BsrI ACTGG 2 cut(s) 242, 458
BssECI CCNNGG 1 cut(s) 27
BssMI GATC 2 cut(s) 31, 72
BssT1I CCWWGG 1 cut(s) 27
Bst2UI CCWGG 1 cut(s) 47
Bst4CI ACNGT 1 cut(s) 326
Bst6I CTCTTC 1 cut(s) 132
BstDEI CTNAG 1 cut(s) 519
BstENI CCTNNNNNAGG 1 cut(s) 44
BstHHI GCGC 1 cut(s) 322
BstKTI GATC 2 cut(s) 34, 75
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 2 cut(s) 31, 72
BstNI CCWGG 1 cut(s) 47
BstSCI CCNGG 1 cut(s) 45
BstSFI CTRYAG 1 cut(s) 459
BstSLI GKGCMC 1 cut(s) 470
BstV1I GCAGC 3 cut(s) 85, 502, 544
BstV2I GAAGAC 1 cut(s) 111
BstX2I RGATCY 2 cut(s) 31, 72
BstXI CCANNNNNNTGG 1 cut(s) 83
BstYI RGATCY 2 cut(s) 31, 72
BsuI GTATCC 1 cut(s) 278
BsuRI GGCC 1 cut(s) 342
BtrI CACGTC 1 cut(s) 410
BtsIMutI CAGTG 3 cut(s) 235, 322, 451
CfoI GCGC 1 cut(s) 322
Cfr13I GGNCC 1 cut(s) 49
CsiI ACCWGGT 1 cut(s) 45
Csp6I GTAC 2 cut(s) 360, 446
CspCI CAANNNNNGTGG 2 cut(s) 409, 444
CviJI RGCY 6 cut(s) 98, 303, 342, 493, 539, 557
CviKI_1 RGCY 6 cut(s) 98, 303, 342, 493, 539, 557
CviQI GTAC 2 cut(s) 360, 446
DdeI CTNAG 1 cut(s) 519
DpnI GATC 2 cut(s) 33, 74
DpnII GATC 2 cut(s) 31, 72
EaeI YGGCCR 1 cut(s) 340
Eam1104I CTCTTC 1 cut(s) 132
EarI CTCTTC 1 cut(s) 132
Eco130I CCWWGG 1 cut(s) 27
Eco47I GGWCC 1 cut(s) 49
Eco57I CTGAAG 1 cut(s) 123
EcoNI CCTNNNNNAGG 1 cut(s) 44
EcoO109I RGGNCCY 1 cut(s) 49
EcoRII CCWGG 1 cut(s) 45
EcoT14I CCWWGG 1 cut(s) 27
ErhI CCWWGG 1 cut(s) 27
FaiI YATR 3 cut(s) 256, 306, 353
FalI AAGNNNNNCTT 6 cut(s) 96, 128, 276, 308, 464, 496
FaqI GGGAC 1 cut(s) 35
FauI CCCGC 1 cut(s) 60
Fnu4HI GCNGC 3 cut(s) 99, 516, 558
Fsp4HI GCNGC 3 cut(s) 99, 516, 558
FspAI RTGCGCAY 1 cut(s) 321
FspI TGCGCA 1 cut(s) 321
GlaI GCGC 1 cut(s) 321
GluI GCNGC 3 cut(s) 99, 516, 558
HaeIII GGCC 1 cut(s) 342
HapII CCGG 1 cut(s) 56
HhaI GCGC 1 cut(s) 322
Hin6I GCGC 1 cut(s) 320
HinP1I GCGC 1 cut(s) 320
HinfI GANTC 4 cut(s) 14, 21, 107, 499
HpaII CCGG 1 cut(s) 56
Hpy166II GTNNAC 1 cut(s) 362
Hpy188I TCNGA 2 cut(s) 36, 349
Hpy188III TCNNGA 2 cut(s) 18, 76
Hpy8I GTNNAC 1 cut(s) 362
HpyAV CCTTC 5 cut(s) 164, 217, 328, 398, 469
HpyCH4III ACNGT 1 cut(s) 326
HpyCH4IV ACGT 1 cut(s) 409
HpyCH4V TGCA 1 cut(s) 461
HpyF3I CTNAG 1 cut(s) 519
HpySE526I ACGT 1 cut(s) 409
HspAI GCGC 1 cut(s) 320
Kzo9I GATC 2 cut(s) 31, 72
LpnPI CCDG 8 cut(s) 3, 32, 53, 59, 69, 89, 223, 439
Lsp1109I GCAGC 3 cut(s) 85, 502, 544
MabI ACCWGGT 1 cut(s) 45
MaeII ACGT 1 cut(s) 409
MaeIII GTNAC 1 cut(s) 286
MalI GATC 2 cut(s) 33, 74
MboI GATC 2 cut(s) 31, 72
MflI RGATCY 2 cut(s) 31, 72
MhlI GDGCHC 1 cut(s) 470
MlsI TGGCCA 1 cut(s) 342
MluCI AATT 2 cut(s) 197, 370
MluNI TGGCCA 1 cut(s) 342
MlyI GAGTC 2 cut(s) 101, 508
MmeI TCCRAC 1 cut(s) 486
MnlI CCTC 6 cut(s) 52, 55, 124, 133, 390, 433
Mox20I TGGCCA 1 cut(s) 342
MscI TGGCCA 1 cut(s) 342
MslI CAYNNNNRTG 1 cut(s) 327
Msp20I TGGCCA 1 cut(s) 342
MspI CCGG 1 cut(s) 56
MspR9I CCNGG 1 cut(s) 47
Mva1269I GAATGC 1 cut(s) 254
MvaI CCWGG 1 cut(s) 47
NdeII GATC 2 cut(s) 31, 72
NlaIV GGNNCC 2 cut(s) 33, 51
NsbI TGCGCA 1 cut(s) 321
PctI GAATGC 1 cut(s) 254
PfeI GAWTC 2 cut(s) 14, 21
PkrI GCNGC 3 cut(s) 100, 517, 559
PleI GAGTC 2 cut(s) 101, 507
PpsI GAGTC 2 cut(s) 101, 507
PpuMI RGGWCCY 1 cut(s) 49
Psp5II RGGWCCY 1 cut(s) 49
Psp6I CCWGG 1 cut(s) 45
PspGI CCWGG 1 cut(s) 45
PspN4I GGNNCC 2 cut(s) 33, 51
PspPI GGNCC 1 cut(s) 49
PspPPI RGGWCCY 1 cut(s) 49
PstI CTGCAG 1 cut(s) 463
PsuI RGATCY 2 cut(s) 31, 72
RsaI GTAC 2 cut(s) 361, 447
RsaNI GTAC 2 cut(s) 360, 446
RseI CAYNNNNRTG 1 cut(s) 327
SatI GCNGC 3 cut(s) 99, 516, 558
Sau3AI GATC 2 cut(s) 31, 72
Sau96I GGNCC 1 cut(s) 49
SchI GAGTC 2 cut(s) 101, 508
ScrFI CCNGG 1 cut(s) 47
SduI GDGCHC 1 cut(s) 470
SetI ASST 6 cut(s) 42, 51, 401, 412, 426, 559
SexAI ACCWGGT 1 cut(s) 45
SfcI CTRYAG 1 cut(s) 459
SinI GGWCC 1 cut(s) 49
SmiMI CAYNNNNRTG 1 cut(s) 327
Sse9I AATT 2 cut(s) 197, 370
SsiI CCGC 1 cut(s) 53
StyD4I CCNGG 1 cut(s) 45
StyI CCWWGG 1 cut(s) 27
TaaI ACNGT 1 cut(s) 326
TaiI ACGT 1 cut(s) 412
TaqI TCGA 1 cut(s) 12
TasI AATT 2 cut(s) 197, 370
TfiI GAWTC 2 cut(s) 14, 21
TscAI CASTG 3 cut(s) 242, 329, 458
TseI GCWGC 3 cut(s) 98, 515, 557
TspDTI ATGAA 4 cut(s) 165, 171, 177, 261
TspRI CASTG 3 cut(s) 242, 329, 458
VpaK11BI GGWCC 1 cut(s) 49
XagI CCTNNNNNAGG 1 cut(s) 44
XapI RAATTY 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.