Rh5AG102700

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000181
Physical Location & Seq
Reverse (-)
9476241 .. 9480201
3961 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG102700.1

Sequence Viewer

Length: 348 bp
ATGACACCCATTGTTCAGACCCTACGCCCAGTCCGCCCTCCTGAAGGTAGATGTTTGATTTGTTCATTGGATGAACACAGTTCATCTGAATGCCCGTACAACACTGAAGTCCCAAAGAACGCAATTGTTGGCAGCGGCTGTGACGTATTTTGTAAGGTTTGTGATTATTTGTTTTCTGAGCGCTGTTGTAACCAAGATTCAGGGCGTGCGAAGCTCAAGTATTGTAATTTATGTTCAAGCTACGGCGAACACTGGCACGTACTGTGCCCGCGCAGATCTGGTGAATATGTGCTCAATCCTCCTGGTCACTTAACTAAATATGCTCGGAGGAACAAAAGTGGTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

12.93

Weight (kDa)

8.51

Isoelectric Point (pI)

59.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000181)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 271
AciI CCGC 3 cut(s) 34, 135, 269
AcuI CTGAAG 2 cut(s) 63, 126
AfaI GTAC 2 cut(s) 98, 261
AfeI AGCGCT 1 cut(s) 182
AfiI CCNNNNNNNGG 1 cut(s) 44
AgsI TTSAA 1 cut(s) 237
AjnI CCWGG 1 cut(s) 301
AluBI AGCT 2 cut(s) 214, 240
AluI AGCT 2 cut(s) 214, 240
Alw21I GWGCWC 1 cut(s) 294
AlwNI CAGNNNCTG 1 cut(s) 138
Aor51HI AGCGCT 1 cut(s) 182
ApeKI GCWGC 1 cut(s) 132
AspLEI GCGC 2 cut(s) 183, 273
AsuHPI GGTGA 1 cut(s) 293
BaeGI GKGCMC 1 cut(s) 269
Bbv12I GWGCWC 1 cut(s) 294
BbvI GCAGC 1 cut(s) 144
BceAI ACGGC 1 cut(s) 259
BciT130I CCWGG 1 cut(s) 303
BfoI RGCGCY 1 cut(s) 184
BglII AGATCT 1 cut(s) 275
BisI GCNGC 2 cut(s) 133, 136
BlsI GCNGC 2 cut(s) 134, 137
Bme1390I CCNGG 1 cut(s) 303
BmrFI CCNGG 1 cut(s) 303
BmrI ACTGGG 1 cut(s) 23
BmuI ACTGGG 1 cut(s) 23
BpuEI CTTGAG 1 cut(s) 200
BsaAI YACGTR 1 cut(s) 259
Bsc4I CCNNNNNNNGG 1 cut(s) 44
Bse1I ACTGG 2 cut(s) 29, 257
BseBI CCWGG 1 cut(s) 303
BseGI GGATG 1 cut(s) 76
BseLI CCNNNNNNNGG 1 cut(s) 44
BseMII CTCAG 1 cut(s) 168
BseNI ACTGG 2 cut(s) 29, 257
BseSI GKGCMC 1 cut(s) 269
BseXI GCAGC 1 cut(s) 144
Bsh1236I CGCG 1 cut(s) 271
BsiHKAI GWGCWC 1 cut(s) 294
BslFI GGGAC 1 cut(s) 95
BslI CCNNNNNNNGG 1 cut(s) 44
BsmFI GGGAC 1 cut(s) 95
BsmI GAATGC 1 cut(s) 95
Bsp1286I GDGCHC 2 cut(s) 269, 294
Bsp143I GATC 1 cut(s) 275
BspACI CCGC 3 cut(s) 34, 135, 269
BspCNI CTCAG 1 cut(s) 169
BspFNI CGCG 1 cut(s) 271
BsrI ACTGG 2 cut(s) 29, 257
BssMI GATC 1 cut(s) 275
Bst2UI CCWGG 1 cut(s) 303
Bst4CI ACNGT 2 cut(s) 80, 264
BstBAI YACGTR 1 cut(s) 259
BstC8I GCNNGC 2 cut(s) 207, 269
BstDEI CTNAG 1 cut(s) 177
BstENI CCTNNNNNAGG 1 cut(s) 42
BstF5I GGATG 1 cut(s) 76
BstFNI CGCG 1 cut(s) 271
BstH2I RGCGCY 1 cut(s) 184
BstHHI GCGC 2 cut(s) 183, 273
BstKTI GATC 1 cut(s) 278
BstMBI GATC 1 cut(s) 275
BstMWI GCNNNNNNNGC 2 cut(s) 33, 211
BstNI CCWGG 1 cut(s) 303
BstSCI CCNGG 1 cut(s) 301
BstSLI GKGCMC 1 cut(s) 269
BstUI CGCG 1 cut(s) 271
BstV1I GCAGC 1 cut(s) 144
BstX2I RGATCY 1 cut(s) 275
BstYI RGATCY 1 cut(s) 275
BtsCI GGATG 1 cut(s) 76
BtsIMutI CAGTG 2 cut(s) 102, 250
Cac8I GCNNGC 2 cut(s) 207, 269
CaiI CAGNNNCTG 1 cut(s) 138
CfoI GCGC 2 cut(s) 183, 273
Csp6I GTAC 2 cut(s) 97, 260
CviJI RGCY 3 cut(s) 138, 214, 240
CviKI_1 RGCY 3 cut(s) 138, 214, 240
CviQI GTAC 2 cut(s) 97, 260
DdeI CTNAG 1 cut(s) 177
DpnI GATC 1 cut(s) 277
DpnII GATC 1 cut(s) 275
EciI GGCGGA 1 cut(s) 23
Eco47III AGCGCT 1 cut(s) 182
Eco57I CTGAAG 2 cut(s) 63, 126
EcoNI CCTNNNNNAGG 1 cut(s) 42
EcoRII CCWGG 1 cut(s) 301
FaiI YATR 3 cut(s) 232, 288, 321
FaqI GGGAC 1 cut(s) 95
FauI CCCGC 1 cut(s) 276
Fnu4HI GCNGC 2 cut(s) 133, 136
FokI GGATG 1 cut(s) 83
Fsp4HI GCNGC 2 cut(s) 133, 136
GlaI GCGC 2 cut(s) 182, 272
GluI GCNGC 2 cut(s) 133, 136
HaeII RGCGCY 1 cut(s) 184
HhaI GCGC 2 cut(s) 183, 273
Hin6I GCGC 2 cut(s) 181, 271
HinP1I GCGC 2 cut(s) 181, 271
HinfI GANTC 1 cut(s) 197
HphI GGTGA 1 cut(s) 293
Hpy188I TCNGA 4 cut(s) 18, 88, 178, 327
Hpy188III TCNNGA 1 cut(s) 41
HpyAV CCTTC 1 cut(s) 38
HpyCH4III ACNGT 2 cut(s) 80, 264
HpyCH4IV ACGT 2 cut(s) 144, 258
HpyF10VI GCNNNNNNNGC 2 cut(s) 33, 211
HpyF3I CTNAG 1 cut(s) 177
HpySE526I ACGT 2 cut(s) 144, 258
HspAI GCGC 2 cut(s) 181, 271
Kzo9I GATC 1 cut(s) 275
LpnPI CCDG 7 cut(s) 42, 54, 186, 238, 264, 288, 315
Lsp1109I GCAGC 1 cut(s) 144
MaeII ACGT 2 cut(s) 144, 258
MaeIII GTNAC 3 cut(s) 140, 188, 305
MalI GATC 1 cut(s) 277
MboI GATC 1 cut(s) 275
MfeI CAATTG 1 cut(s) 123
MflI RGATCY 1 cut(s) 275
MhlI GDGCHC 2 cut(s) 269, 294
MluCI AATT 2 cut(s) 123, 226
MnlI CCTC 3 cut(s) 48, 309, 321
MseI TTAA 1 cut(s) 311
MslI CAYNNNNRTG 1 cut(s) 88
MspA1I CMGCKG 1 cut(s) 135
MspR9I CCNGG 1 cut(s) 303
MunI CAATTG 1 cut(s) 123
Mva1269I GAATGC 1 cut(s) 95
MvaI CCWGG 1 cut(s) 303
MvnI CGCG 1 cut(s) 271
MwoI GCNNNNNNNGC 2 cut(s) 33, 211
NdeII GATC 1 cut(s) 275
NmuCI GTSAC 2 cut(s) 140, 305
PctI GAATGC 1 cut(s) 95
PfeI GAWTC 1 cut(s) 197
PkrI GCNGC 2 cut(s) 134, 137
Ppu21I YACGTR 1 cut(s) 259
Psp6I CCWGG 1 cut(s) 301
PspGI CCWGG 1 cut(s) 301
PsrI GAACNNNNNNTAC 2 cut(s) 217, 249
PstNI CAGNNNCTG 1 cut(s) 138
PsuI RGATCY 1 cut(s) 275
RsaI GTAC 2 cut(s) 98, 261
RsaNI GTAC 2 cut(s) 97, 260
RseI CAYNNNNRTG 1 cut(s) 88
SaqAI TTAA 1 cut(s) 311
SatI GCNGC 2 cut(s) 133, 136
Sau3AI GATC 1 cut(s) 275
ScrFI CCNGG 1 cut(s) 303
SduI GDGCHC 2 cut(s) 269, 294
SetI ASST 6 cut(s) 49, 147, 159, 216, 242, 261
SmiMI CAYNNNNRTG 1 cut(s) 88
SmlI CTYRAG 1 cut(s) 215
SmoI CTYRAG 1 cut(s) 215
Sse9I AATT 2 cut(s) 123, 226
SsiI CCGC 3 cut(s) 34, 135, 269
StyD4I CCNGG 1 cut(s) 301
TaaI ACNGT 2 cut(s) 80, 264
TaiI ACGT 2 cut(s) 147, 261
TasI AATT 2 cut(s) 123, 226
TauI GCSGC 1 cut(s) 138
TfiI GAWTC 1 cut(s) 197
Tru1I TTAA 1 cut(s) 311
Tru9I TTAA 1 cut(s) 311
TscAI CASTG 2 cut(s) 109, 257
TseFI GTSAC 2 cut(s) 140, 305
TseI GCWGC 1 cut(s) 132
Tsp45I GTSAC 2 cut(s) 140, 305
TspDTI ATGAA 3 cut(s) 54, 72, 87
TspRI CASTG 2 cut(s) 109, 257
XagI CCTNNNNNAGG 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.