Rh2BG498500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000181
Physical Location & Seq
Forward (+)
70409580 .. 70411135
1556 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG498500.1

Sequence Viewer

Length: 579 bp
ATGTCTCTTGTCAAATCAGAATTCTCCAAGGATCCGAACCCGTACCTGAACCAGGTCCCGCCGGAGGAGGACGACAAGATCCAGGCTCATGGAAAACACAAGGCTGCTGAAGACTCTCTGTCTCAACTTGAAGAAGAGGAAGAAGATGAAGAAGGAGAAGAAGAAGCAGAAGAAGAAGAAGAAGAAGCAGAAGAAGAAGAAGAAGGAGAAGAATTTGAGTTGTGTGATGTTTGTTTGAAGGACAAGGAACACTGGACGGATGAATGCCCGTACTTGGTTTGTATCCCAAACCCAATGGAAGTAACTCTTGGCAAAGGTTATTATATGGTTTGTGTGGACTGTAATGTGTCGGGTGGCCACTCTGATATAGTCGGTACACAATGTAATGTGTGGGGTGGCCACCCTGATAGGAGGTGGAAAGGACGTGCTATTGTCAAGGTCTGCGGTATTTGTGCGGGCGTACGCCACTGGTCTGCAGAGTGCCCAAATAAGCACTTACTACAAAAGCAAAAGAGTCTGTTGGAGTGTGCTGCTGAATATCGGTCTTGGTTGGCTACCAAAAAATGTCAACCTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

192

Amino Acids

21.76

Weight (kDa)

4.53

Isoelectric Point (pI)

67.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000181)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 59, 444, 455
AclWI GGATC 3 cut(s) 26, 39, 73
AcoI YGGCCR 2 cut(s) 355, 397
AcsI RAATTY 2 cut(s) 20, 212
AcuI CTGAAG 1 cut(s) 129
AfaI GTAC 4 cut(s) 44, 272, 376, 462
AfiI CCNNNNNNNGG 3 cut(s) 52, 64, 274
AgsI TTSAA 2 cut(s) 131, 238
AhdI GACNNNNNGTC 1 cut(s) 118
AjiI CACGTC 1 cut(s) 425
AjnI CCWGG 2 cut(s) 51, 81
AjuI GAANNNNNNNTTGG 2 cut(s) 291, 323
Alw26I GTCTC 2 cut(s) 9, 126
AlwI GGATC 3 cut(s) 26, 39, 73
AoxI GGCC 2 cut(s) 355, 397
ApeKI GCWGC 2 cut(s) 104, 530
ApoI RAATTY 2 cut(s) 20, 212
AspS9I GGNCC 1 cut(s) 55
AvaII GGWCC 1 cut(s) 55
BaeGI GKGCMC 1 cut(s) 485
BalI TGGCCA 2 cut(s) 357, 399
BamHI GGATCC 1 cut(s) 31
BbsI GAAGAC 1 cut(s) 117
BbvI GCAGC 2 cut(s) 91, 517
BciT130I CCWGG 2 cut(s) 53, 83
BciVI GTATCC 1 cut(s) 293
BcoDI GTCTC 2 cut(s) 9, 126
BfmI CTRYAG 1 cut(s) 474
BfuI GTATCC 1 cut(s) 293
BisI GCNGC 2 cut(s) 105, 531
BlsI GCNGC 2 cut(s) 106, 532
Bme1390I CCNGG 2 cut(s) 53, 83
Bme18I GGWCC 1 cut(s) 55
BmeRI GACNNNNNGTC 1 cut(s) 118
BmgBI CACGTC 1 cut(s) 425
BmgT120I GGNCC 1 cut(s) 55
BmiI GGNNCC 2 cut(s) 33, 57
BmrFI CCNGG 2 cut(s) 53, 83
BpiI GAAGAC 1 cut(s) 117
BsaJI CCNNGG 1 cut(s) 27
Bsc4I CCNNNNNNNGG 3 cut(s) 52, 64, 274
Bse1I ACTGG 2 cut(s) 257, 473
BseBI CCWGG 2 cut(s) 53, 83
BseDI CCNNGG 1 cut(s) 27
BseGI GGATG 1 cut(s) 265
BseLI CCNNNNNNNGG 3 cut(s) 52, 64, 274
BseNI ACTGG 2 cut(s) 257, 473
BseRI GAGGAG 1 cut(s) 80
BseSI GKGCMC 1 cut(s) 485
BseXI GCAGC 2 cut(s) 91, 517
BshFI GGCC 2 cut(s) 357, 399
BsiSI CCGG 1 cut(s) 62
BsiWI CGTACG 1 cut(s) 460
BslFI GGGAC 1 cut(s) 41
BslI CCNNNNNNNGG 3 cut(s) 52, 64, 274
BsmAI GTCTC 2 cut(s) 9, 126
BsmFI GGGAC 1 cut(s) 41
BsmI GAATGC 1 cut(s) 269
BsnI GGCC 2 cut(s) 357, 399
Bsp1286I GDGCHC 1 cut(s) 485
Bsp143I GATC 2 cut(s) 31, 78
BspACI CCGC 3 cut(s) 59, 444, 455
BspANI GGCC 2 cut(s) 357, 399
BspLI GGNNCC 2 cut(s) 33, 57
BspMAI CTGCAG 1 cut(s) 478
BspPI GGATC 3 cut(s) 26, 39, 73
BsrI ACTGG 2 cut(s) 257, 473
BssECI CCNNGG 1 cut(s) 27
BssMI GATC 2 cut(s) 31, 78
BssT1I CCWWGG 1 cut(s) 27
Bst2UI CCWGG 2 cut(s) 53, 83
Bst4CI ACNGT 1 cut(s) 341
Bst6I CTCTTC 1 cut(s) 129
BstC8I GCNNGC 1 cut(s) 457
BstENI CCTNNNNNAGG 1 cut(s) 50
BstF5I GGATG 1 cut(s) 265
BstKTI GATC 2 cut(s) 34, 81
BstMAI GTCTC 2 cut(s) 9, 126
BstMBI GATC 2 cut(s) 31, 78
BstNI CCWGG 2 cut(s) 53, 83
BstSCI CCNGG 2 cut(s) 51, 81
BstSFI CTRYAG 1 cut(s) 474
BstSLI GKGCMC 1 cut(s) 485
BstV1I GCAGC 2 cut(s) 91, 517
BstV2I GAAGAC 1 cut(s) 117
BstX2I RGATCY 2 cut(s) 31, 78
BstXI CCANNNNNNTGG 1 cut(s) 89
BstYI RGATCY 2 cut(s) 31, 78
BsuI GTATCC 1 cut(s) 293
BsuRI GGCC 2 cut(s) 357, 399
BtrI CACGTC 1 cut(s) 425
BtsCI GGATG 1 cut(s) 265
BtsIMutI CAGTG 2 cut(s) 250, 466
Cac8I GCNNGC 1 cut(s) 457
Cfr13I GGNCC 1 cut(s) 55
CsiI ACCWGGT 1 cut(s) 51
Csp6I GTAC 4 cut(s) 43, 271, 375, 461
CviAII CATG 1 cut(s) 89
CviJI RGCY 5 cut(s) 86, 104, 357, 399, 554
CviKI_1 RGCY 5 cut(s) 86, 104, 357, 399, 554
CviQI GTAC 4 cut(s) 43, 271, 375, 461
DpnI GATC 2 cut(s) 33, 80
DpnII GATC 2 cut(s) 31, 78
DriI GACNNNNNGTC 1 cut(s) 118
EaeI YGGCCR 2 cut(s) 355, 397
Eam1104I CTCTTC 1 cut(s) 129
Eam1105I GACNNNNNGTC 1 cut(s) 118
EarI CTCTTC 1 cut(s) 129
Eco130I CCWWGG 1 cut(s) 27
Eco47I GGWCC 1 cut(s) 55
Eco57I CTGAAG 1 cut(s) 129
EcoNI CCTNNNNNAGG 1 cut(s) 50
EcoO109I RGGNCCY 1 cut(s) 55
EcoRI GAATTC 1 cut(s) 20
EcoRII CCWGG 2 cut(s) 51, 81
EcoT14I CCWWGG 1 cut(s) 27
ErhI CCWWGG 1 cut(s) 27
FaeI CATG 1 cut(s) 92
FaiI YATR 4 cut(s) 90, 324, 326, 368
FalI AAGNNNNNCTT 2 cut(s) 291, 323
FaqI GGGAC 1 cut(s) 41
FatI CATG 1 cut(s) 88
FauI CCCGC 2 cut(s) 66, 448
Fnu4HI GCNGC 2 cut(s) 105, 531
FokI GGATG 1 cut(s) 272
Fsp4HI GCNGC 2 cut(s) 105, 531
GluI GCNGC 2 cut(s) 105, 531
HaeIII GGCC 2 cut(s) 357, 399
HapII CCGG 1 cut(s) 62
Hin1II CATG 1 cut(s) 92
HincII GTYRAC 1 cut(s) 569
HindII GTYRAC 1 cut(s) 569
HinfI GANTC 2 cut(s) 113, 514
HpaII CCGG 1 cut(s) 62
Hpy166II GTNNAC 3 cut(s) 337, 377, 569
Hpy188I TCNGA 3 cut(s) 19, 36, 364
Hpy8I GTNNAC 3 cut(s) 337, 377, 569
HpyAV CCTTC 3 cut(s) 146, 197, 232
HpyCH4III ACNGT 1 cut(s) 341
HpyCH4IV ACGT 1 cut(s) 424
HpyCH4V TGCA 1 cut(s) 476
HpySE526I ACGT 1 cut(s) 424
Hsp92II CATG 1 cut(s) 92
Kzo9I GATC 2 cut(s) 31, 78
LpnPI CCDG 9 cut(s) 38, 59, 65, 68, 75, 95, 238, 417, 454
Lsp1109I GCAGC 2 cut(s) 91, 517
MabI ACCWGGT 1 cut(s) 51
MaeII ACGT 1 cut(s) 424
MaeIII GTNAC 1 cut(s) 301
MalI GATC 2 cut(s) 33, 80
MboI GATC 2 cut(s) 31, 78
MflI RGATCY 2 cut(s) 31, 78
MhlI GDGCHC 1 cut(s) 485
MlsI TGGCCA 2 cut(s) 357, 399
MluCI AATT 2 cut(s) 20, 212
MluNI TGGCCA 2 cut(s) 357, 399
MlyI GAGTC 2 cut(s) 107, 523
MmeI TCCRAC 1 cut(s) 501
MnlI CCTC 4 cut(s) 58, 61, 130, 405
Mox20I TGGCCA 2 cut(s) 357, 399
MscI TGGCCA 2 cut(s) 357, 399
Msp20I TGGCCA 2 cut(s) 357, 399
MspI CCGG 1 cut(s) 62
MspR9I CCNGG 2 cut(s) 53, 83
Mva1269I GAATGC 1 cut(s) 269
MvaI CCWGG 2 cut(s) 53, 83
NdeII GATC 2 cut(s) 31, 78
NlaIII CATG 1 cut(s) 92
NlaIV GGNNCC 2 cut(s) 33, 57
PctI GAATGC 1 cut(s) 269
Pfl23II CGTACG 1 cut(s) 460
PkrI GCNGC 2 cut(s) 106, 532
PleI GAGTC 2 cut(s) 107, 522
PpsI GAGTC 2 cut(s) 107, 522
PpuMI RGGWCCY 1 cut(s) 55
Psp5II RGGWCCY 1 cut(s) 55
Psp6I CCWGG 2 cut(s) 51, 81
PspGI CCWGG 2 cut(s) 51, 81
PspLI CGTACG 1 cut(s) 460
PspN4I GGNNCC 2 cut(s) 33, 57
PspPI GGNCC 1 cut(s) 55
PspPPI RGGWCCY 1 cut(s) 55
PstI CTGCAG 1 cut(s) 478
PsuI RGATCY 2 cut(s) 31, 78
RsaI GTAC 4 cut(s) 44, 272, 376, 462
RsaNI GTAC 4 cut(s) 43, 271, 375, 461
SatI GCNGC 2 cut(s) 105, 531
Sau3AI GATC 2 cut(s) 31, 78
Sau96I GGNCC 1 cut(s) 55
SchI GAGTC 2 cut(s) 107, 523
ScrFI CCNGG 2 cut(s) 53, 83
SduI GDGCHC 1 cut(s) 485
SetI ASST 7 cut(s) 48, 57, 319, 416, 427, 441, 574
SexAI ACCWGGT 1 cut(s) 51
SfcI CTRYAG 1 cut(s) 474
SinI GGWCC 1 cut(s) 55
Sse9I AATT 2 cut(s) 20, 212
SsiI CCGC 3 cut(s) 59, 444, 455
StyD4I CCNGG 2 cut(s) 51, 81
StyI CCWWGG 1 cut(s) 27
TaaI ACNGT 1 cut(s) 341
TaiI ACGT 1 cut(s) 427
TaqII GACCGA 1 cut(s) 531
TasI AATT 2 cut(s) 20, 212
TscAI CASTG 2 cut(s) 257, 473
TseI GCWGC 2 cut(s) 104, 530
TspDTI ATGAA 2 cut(s) 162, 276
TspGWI ACGGA 1 cut(s) 272
TspRI CASTG 2 cut(s) 257, 473
VpaK11BI GGWCC 1 cut(s) 55
XagI CCTNNNNNAGG 1 cut(s) 50
XapI RAATTY 2 cut(s) 20, 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.