RchiOBHm_Chr3g0457761

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000181
Physical Location & Seq
Reverse (-)
6754790 .. 6757335
2546 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ42450

Sequence Viewer

Length: 609 bp
ATGAGCAAGAAAGCAGGTATGGAGCTGGCGAGGCCATCGGCATCGGAATCTTTCCAAAAGCAGGACCTGGCCGTCGTCCCCAAGCCTGATGACACCAAGGCGGAAGAACCAAAGGCTCGATGGCCTTATATGGATCCATGGCCTTATATCCGCAATTTACCTGATGGTAGGAGGATCATAATCTCAAGGAAGAACCCACCTACTGAGCATCCTTGCGCTTATACCGAGATGCCCCCTGATGATCGTGGTACTTTCTCTGAAAAATCAAAGCTCCGTCTCCCTAGTTGGCCCTTCCCTCGTGCGAGAGTCACTCGCGAAATTCCTGCTGCATGTATGATTTGTTCCTTGGTGGATGAACACAGTTCGACTCAATGCCCATACCTTGATCTTCTCCCGAAGAATGCAACTGTTAGCAGTGACTGTGACGTAGTTTGTACGATTTGTTATCAATTGTTTTCAGGGCACTGCTGTAACCAAGATGCTGGACGTGCTAAGCTCAGGTTATGTGATAATTGTATGAGGATTGGCGACCACCGGACATCTCAGTGCCCGGAGAAGAATAGGCGCTTAAGCTACAGGCAGCTACTGGCAGTCTCATTGACATCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

202

Amino Acids

22.92

Weight (kDa)

8.72

Isoelectric Point (pI)

56.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000181)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 71
Acc36I ACCTGC 1 cut(s) 5
AccII CGCG 1 cut(s) 315
AciI CCGC 2 cut(s) 101, 151
AclWI GGATC 3 cut(s) 128, 141, 182
AcoI YGGCCR 1 cut(s) 69
AcsI RAATTY 1 cut(s) 318
AfaI GTAC 2 cut(s) 250, 436
AfiI CCNNNNNNNGG 1 cut(s) 61
AflII CTTAAG 1 cut(s) 568
AjiI CACGTC 1 cut(s) 488
AjnI CCWGG 1 cut(s) 66
AluBI AGCT 5 cut(s) 25, 271, 496, 573, 583
AluI AGCT 5 cut(s) 25, 271, 496, 573, 583
Alw26I GTCTC 2 cut(s) 281, 598
AlwI GGATC 3 cut(s) 128, 141, 182
AlwNI CAGNNNCTG 3 cut(s) 67, 420, 586
AoxI GGCC 5 cut(s) 32, 69, 122, 140, 287
ApeKI GCWGC 2 cut(s) 326, 580
ApoI RAATTY 1 cut(s) 318
AspLEI GCGC 2 cut(s) 218, 567
AspS9I GGNCC 2 cut(s) 64, 288
AsuC2I CCSGG 1 cut(s) 551
AvaII GGWCC 1 cut(s) 64
BaeGI GKGCMC 2 cut(s) 465, 551
BamHI GGATCC 1 cut(s) 133
BauI CACGAG 1 cut(s) 297
BbvI GCAGC 2 cut(s) 313, 592
BccI CCATC 3 cut(s) 43, 114, 158
BceAI ACGGC 1 cut(s) 56
BcgI CGANNNNNNTGC 2 cut(s) 305, 339
BciT130I CCWGG 1 cut(s) 68
BcnI CCSGG 1 cut(s) 551
BcoDI GTCTC 2 cut(s) 281, 598
BfaI CTAG 2 cut(s) 282, 607
BfmI CTRYAG 1 cut(s) 574
BfoI RGCGCY 1 cut(s) 568
BfrI CTTAAG 1 cut(s) 568
BfuAI ACCTGC 1 cut(s) 5
BisI GCNGC 2 cut(s) 327, 581
BlpI GCTNAGC 1 cut(s) 492
BlsI GCNGC 2 cut(s) 328, 582
Bme1390I CCNGG 2 cut(s) 68, 551
Bme18I GGWCC 1 cut(s) 64
BmgBI CACGTC 1 cut(s) 488
BmgT120I GGNCC 2 cut(s) 64, 288
BmiI GGNNCC 1 cut(s) 135
BmrFI CCNGG 2 cut(s) 68, 551
BmsI GCATC 4 cut(s) 50, 217, 219, 469
BplI GAGNNNNNCTC 2 cut(s) 295, 327
Bpu10I CCTNAGC 1 cut(s) 497
Bpu1102I GCTNAGC 1 cut(s) 492
BpuEI CTTGAG 1 cut(s) 169
BpuMI CCSGG 1 cut(s) 551
BsaBI GATNNNNATC 1 cut(s) 179
BsaJI CCNNGG 3 cut(s) 96, 137, 345
BsaWI WCCGGW 1 cut(s) 534
Bsc4I CCNNNNNNNGG 1 cut(s) 61
Bse1I ACTGG 1 cut(s) 591
Bse8I GATNNNNATC 1 cut(s) 179
BseBI CCWGG 1 cut(s) 68
BseDI CCNNGG 3 cut(s) 96, 137, 345
BseGI GGATG 3 cut(s) 208, 358, 602
BseJI GATNNNNATC 1 cut(s) 179
BseLI CCNNNNNNNGG 1 cut(s) 61
BseMII CTCAG 3 cut(s) 195, 511, 557
BseNI ACTGG 1 cut(s) 591
BseSI GKGCMC 2 cut(s) 465, 551
BseXI GCAGC 2 cut(s) 313, 592
Bsh1236I CGCG 1 cut(s) 315
BshFI GGCC 5 cut(s) 34, 71, 124, 142, 289
BsiSI CCGG 2 cut(s) 535, 551
BslFI GGGAC 1 cut(s) 62
BslI CCNNNNNNNGG 1 cut(s) 61
BsmAI GTCTC 2 cut(s) 281, 598
BsmBI CGTCTC 1 cut(s) 281
BsmFI GGGAC 1 cut(s) 62
BsmI GAATGC 1 cut(s) 406
BsnI GGCC 5 cut(s) 34, 71, 124, 142, 289
Bsp1286I GDGCHC 2 cut(s) 465, 551
Bsp143I GATC 4 cut(s) 133, 174, 241, 385
Bsp1720I GCTNAGC 1 cut(s) 492
Bsp19I CCATGG 1 cut(s) 137
Bsp68I TCGCGA 1 cut(s) 315
BspACI CCGC 2 cut(s) 101, 151
BspANI GGCC 5 cut(s) 34, 71, 124, 142, 289
BspCNI CTCAG 3 cut(s) 196, 510, 556
BspFNI CGCG 1 cut(s) 315
BspLI GGNNCC 1 cut(s) 135
BspMI ACCTGC 1 cut(s) 5
BspPI GGATC 3 cut(s) 128, 141, 182
BspTI CTTAAG 1 cut(s) 568
BsrI ACTGG 1 cut(s) 591
BssECI CCNNGG 3 cut(s) 96, 137, 345
BssMI GATC 4 cut(s) 133, 174, 241, 385
BssSI CACGAG 1 cut(s) 297
BssT1I CCWWGG 3 cut(s) 96, 137, 345
Bst2BI CACGAG 1 cut(s) 297
Bst2UI CCWGG 1 cut(s) 68
Bst4CI ACNGT 3 cut(s) 362, 409, 422
BstAFI CTTAAG 1 cut(s) 568
BstC8I GCNNGC 1 cut(s) 27
BstDEI CTNAG 4 cut(s) 204, 492, 497, 543
BstDSI CCRYGG 1 cut(s) 137
BstF5I GGATG 3 cut(s) 208, 358, 602
BstFNI CGCG 1 cut(s) 315
BstH2I RGCGCY 1 cut(s) 568
BstHHI GCGC 2 cut(s) 218, 567
BstKTI GATC 4 cut(s) 136, 177, 244, 388
BstMAI GTCTC 2 cut(s) 281, 598
BstMBI GATC 4 cut(s) 133, 174, 241, 385
BstMWI GCNNNNNNNGC 2 cut(s) 31, 488
BstNI CCWGG 1 cut(s) 68
BstNSI RCATGY 1 cut(s) 333
BstSCI CCNGG 2 cut(s) 66, 549
BstSFI CTRYAG 1 cut(s) 574
BstSLI GKGCMC 2 cut(s) 465, 551
BstUI CGCG 1 cut(s) 315
BstV1I GCAGC 2 cut(s) 313, 592
BstX2I RGATCY 1 cut(s) 133
BstXI CCANNNNNNTGG 1 cut(s) 482
BstYI RGATCY 1 cut(s) 133
BsuRI GGCC 5 cut(s) 34, 71, 124, 142, 289
BtgI CCRYGG 1 cut(s) 137
BtrI CACGTC 1 cut(s) 488
BtsCI GGATG 3 cut(s) 208, 358, 602
BtsI GCAGTG 2 cut(s) 421, 463
BtsIMutI CAGTG 3 cut(s) 421, 463, 551
BtuMI TCGCGA 1 cut(s) 315
BveI ACCTGC 1 cut(s) 5
Cac8I GCNNGC 1 cut(s) 27
CaiI CAGNNNCTG 3 cut(s) 67, 420, 586
CfoI GCGC 2 cut(s) 218, 567
Cfr13I GGNCC 2 cut(s) 64, 288
Csp6I GTAC 2 cut(s) 249, 435
CviAII CATG 2 cut(s) 138, 330
CviQI GTAC 2 cut(s) 249, 435
DdeI CTNAG 4 cut(s) 204, 492, 497, 543
DpnI GATC 4 cut(s) 135, 176, 243, 387
DpnII GATC 4 cut(s) 133, 174, 241, 385
DrdI GACNNNNNNGTC 1 cut(s) 71
DseDI GACNNNNNNGTC 1 cut(s) 71
EaeI YGGCCR 1 cut(s) 69
EciI GGCGGA 1 cut(s) 116
Eco130I CCWWGG 3 cut(s) 96, 137, 345
Eco47I GGWCC 1 cut(s) 64
EcoO109I RGGNCCY 1 cut(s) 64
EcoRII CCWGG 1 cut(s) 66
EcoT14I CCWWGG 3 cut(s) 96, 137, 345
ErhI CCWWGG 3 cut(s) 96, 137, 345
Esp3I CGTCTC 1 cut(s) 281
FaeI CATG 2 cut(s) 141, 333
FaqI GGGAC 1 cut(s) 62
FatI CATG 2 cut(s) 137, 329
Fnu4HI GCNGC 2 cut(s) 327, 581
FokI GGATG 3 cut(s) 195, 365, 589
Fsp4HI GCNGC 2 cut(s) 327, 581
FspBI CTAG 2 cut(s) 282, 607
GlaI GCGC 2 cut(s) 217, 566
GluI GCNGC 2 cut(s) 327, 581
HaeII RGCGCY 1 cut(s) 568
HaeIII GGCC 5 cut(s) 34, 71, 124, 142, 289
HapII CCGG 2 cut(s) 535, 551
HhaI GCGC 2 cut(s) 218, 567
Hin1II CATG 2 cut(s) 141, 333
Hin6I GCGC 2 cut(s) 216, 565
HinP1I GCGC 2 cut(s) 216, 565
HinfI GANTC 3 cut(s) 47, 306, 367
HpaII CCGG 2 cut(s) 535, 551
Hpy188I TCNGA 2 cut(s) 46, 259
Hpy188III TCNNGA 2 cut(s) 314, 394
Hpy99I CGWCG 1 cut(s) 77
HpyAV CCTTC 1 cut(s) 301
HpyCH4III ACNGT 3 cut(s) 362, 409, 422
HpyCH4IV ACGT 2 cut(s) 426, 487
HpyCH4V TGCA 2 cut(s) 329, 404
HpyF10VI GCNNNNNNNGC 2 cut(s) 31, 488
HpyF3I CTNAG 4 cut(s) 204, 492, 497, 543
HpySE526I ACGT 2 cut(s) 426, 487
Hsp92II CATG 2 cut(s) 141, 333
HspAI GCGC 2 cut(s) 216, 565
Kzo9I GATC 4 cut(s) 133, 174, 241, 385
LmnI GCTCC 2 cut(s) 22, 276
Lsp1109I GCAGC 2 cut(s) 313, 592
LweI GCATC 4 cut(s) 50, 217, 219, 469
MaeI CTAG 2 cut(s) 282, 607
MaeII ACGT 2 cut(s) 426, 487
MaeIII GTNAC 4 cut(s) 307, 416, 422, 470
MalI GATC 4 cut(s) 135, 176, 243, 387
MboI GATC 4 cut(s) 133, 174, 241, 385
MboII GAAGA 5 cut(s) 116, 202, 380, 409, 568
MfeI CAATTG 1 cut(s) 449
MflI RGATCY 1 cut(s) 133
MhlI GDGCHC 2 cut(s) 465, 551
MluCI AATT 4 cut(s) 154, 318, 449, 511
MlyI GAGTC 2 cut(s) 315, 361
MnlI CCTC 4 cut(s) 24, 165, 306, 513
MseI TTAA 1 cut(s) 569
MslI CAYNNNNRTG 1 cut(s) 544
MspCI CTTAAG 1 cut(s) 568
MspI CCGG 2 cut(s) 535, 551
MspR9I CCNGG 2 cut(s) 68, 551
MunI CAATTG 1 cut(s) 449
Mva1269I GAATGC 1 cut(s) 406
MvaI CCWGG 1 cut(s) 68
MvnI CGCG 1 cut(s) 315
MwoI GCNNNNNNNGC 2 cut(s) 31, 488
NciI CCSGG 1 cut(s) 551
NcoI CCATGG 1 cut(s) 137
NdeII GATC 4 cut(s) 133, 174, 241, 385
NlaIII CATG 2 cut(s) 141, 333
NlaIV GGNNCC 1 cut(s) 135
NmuCI GTSAC 3 cut(s) 307, 416, 422
NruI TCGCGA 1 cut(s) 315
NspI RCATGY 1 cut(s) 333
PctI GAATGC 1 cut(s) 406
PfeI GAWTC 1 cut(s) 47
PkrI GCNGC 2 cut(s) 328, 582
PleI GAGTC 2 cut(s) 314, 361
PpsI GAGTC 2 cut(s) 314, 361
PpuMI RGGWCCY 1 cut(s) 64
Psp5II RGGWCCY 1 cut(s) 64
Psp6I CCWGG 1 cut(s) 66
PspGI CCWGG 1 cut(s) 66
PspN4I GGNNCC 1 cut(s) 135
PspPI GGNCC 2 cut(s) 64, 288
PspPPI RGGWCCY 1 cut(s) 64
PsrI GAACNNNNNNTAC 2 cut(s) 325, 357
PstNI CAGNNNCTG 3 cut(s) 67, 420, 586
PsuI RGATCY 1 cut(s) 133
RruI TCGCGA 1 cut(s) 315
RsaI GTAC 2 cut(s) 250, 436
RsaNI GTAC 2 cut(s) 249, 435
RseI CAYNNNNRTG 1 cut(s) 544
SaqAI TTAA 1 cut(s) 569
SatI GCNGC 2 cut(s) 327, 581
Sau3AI GATC 4 cut(s) 133, 174, 241, 385
Sau96I GGNCC 2 cut(s) 64, 288
SchI GAGTC 2 cut(s) 315, 361
ScrFI CCNGG 2 cut(s) 68, 551
SduI GDGCHC 2 cut(s) 465, 551
SfaNI GCATC 4 cut(s) 50, 217, 219, 469
SfcI CTRYAG 1 cut(s) 574
SinI GGWCC 1 cut(s) 64
SmiMI CAYNNNNRTG 1 cut(s) 544
SmlI CTYRAG 2 cut(s) 184, 568
SmoI CTYRAG 2 cut(s) 184, 568
Sse9I AATT 4 cut(s) 154, 318, 449, 511
SsiI CCGC 2 cut(s) 101, 151
SspMI CTAG 2 cut(s) 282, 607
StyD4I CCNGG 2 cut(s) 66, 549
StyI CCWWGG 3 cut(s) 96, 137, 345
TaaI ACNGT 3 cut(s) 362, 409, 422
TaiI ACGT 2 cut(s) 429, 490
TaqI TCGA 2 cut(s) 118, 365
TasI AATT 4 cut(s) 154, 318, 449, 511
TfiI GAWTC 1 cut(s) 47
Tru1I TTAA 1 cut(s) 569
Tru9I TTAA 1 cut(s) 569
TscAI CASTG 3 cut(s) 421, 470, 551
TseFI GTSAC 3 cut(s) 307, 416, 422
TseI GCWGC 2 cut(s) 326, 580
Tsp45I GTSAC 3 cut(s) 307, 416, 422
TspDTI ATGAA 1 cut(s) 369
TspGWI ACGGA 1 cut(s) 263
TspRI CASTG 3 cut(s) 421, 470, 551
Vha464I CTTAAG 1 cut(s) 568
VpaK11BI GGWCC 1 cut(s) 64
XapI RAATTY 1 cut(s) 318
XceI RCATGY 1 cut(s) 333
XcmI CCANNNNNNNNNTGG 1 cut(s) 117
XspI CTAG 2 cut(s) 282, 607
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.