FvH4_6g49060

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000181
Physical Location & Seq
Forward (+)
36844513 .. 36846473
1961 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g49060.t1

Sequence Viewer

Length: 702 bp
ATGGATCTGATGCGCTACCAACCTACTATCGGCGGCTCCGCCAGGGATGCCCCGCCTGAGGCAGGATGCGAGAGCCGGAAGCGGGTAGACGGATGTCATGACATCAAACAGGATTCCTCTAAGAAACGAGGGCTTTCGGGAGAAGAACTCAAACAGTTTCTCTATGAGTCCTCTAGGAAATCTGAGATTTCGGAACGAGAGTTACAACAGATATTTGTGAAGATCATCAATGGTACCGATCCTAACCATAAATTGTCTGAAAGGGAAGCCGAATCCACAAGGAGTCTGTTAGATACCTGGAGAATGCAGGGAGATTTACTTGTATTGCCTTACGAGGAATACGTAAAGAGGGTGTTTATTTCTGACGAGGAATTTCGAAAGCTATGCAAGGAAGCCGAGGCAGCTAGGAAACTGGAGATAGCTGAAAAAAAACAAACAGGTAAGCCTGATGTAAAGCCTAAACTTTGTGAAGTTTGTATGAAGGTCGGGGACCACATGTCAATTAGATGTCCCTACTTGGAGGATGTTCCAAACCCTGACACCACAGTTGTTGGTGAGGGCTATGAAATATGTTGCCACCACTGCCTTGAGTCGGATCATGGCCACCCCAAGGGAAGCTGGGCAGGATTTGCATATAAATTGAGTAATGATGAAGAATGCTTAGATGAAGACTCAGAGTCTGAATCAGATGATGAGCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

234

Amino Acids

26.52

Weight (kDa)

4.99

Isoelectric Point (pI)

48.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000181)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 233
AccB1I GGYRCC 1 cut(s) 233
AccI GTMKAC 1 cut(s) 87
AciI CCGC 4 cut(s) 33, 39, 53, 82
AclWI GGATC 3 cut(s) 12, 233, 603
AcoI YGGCCR 1 cut(s) 601
AcsI RAATTY 1 cut(s) 371
AfaI GTAC 1 cut(s) 235
AfiI CCNNNNNNNGG 6 cut(s) 29, 58, 62, 82, 592, 610
AflIII ACRYGT 1 cut(s) 495
AhdI GACNNNNNGTC 2 cut(s) 496, 676
AjnI CCWGG 2 cut(s) 41, 296
AluBI AGCT 4 cut(s) 382, 404, 422, 618
AluI AGCT 4 cut(s) 382, 404, 422, 618
AlwI GGATC 3 cut(s) 12, 233, 603
AlwNI CAGNNNCTG 1 cut(s) 680
AoxI GGCC 1 cut(s) 601
ApeKI GCWGC 1 cut(s) 401
ApoI RAATTY 1 cut(s) 371
Asp718I GGTACC 1 cut(s) 233
AspLEI GCGC 1 cut(s) 15
AspS9I GGNCC 1 cut(s) 490
AsuHPI GGTGA 1 cut(s) 566
AsuII TTCGAA 1 cut(s) 376
AvaII GGWCC 1 cut(s) 490
AxyI CCTNAGG 1 cut(s) 57
BalI TGGCCA 1 cut(s) 603
BanI GGYRCC 1 cut(s) 233
BbsI GAAGAC 1 cut(s) 675
BbvI GCAGC 1 cut(s) 413
BcgI CGANNNNNNTGC 2 cut(s) 366, 400
BciT130I CCWGG 2 cut(s) 43, 298
BfaI CTAG 2 cut(s) 174, 405
BisI GCNGC 2 cut(s) 34, 402
BlsI GCNGC 2 cut(s) 35, 403
Bme1390I CCNGG 2 cut(s) 43, 298
Bme18I GGWCC 1 cut(s) 490
BmeRI GACNNNNNGTC 2 cut(s) 496, 676
BmgT120I GGNCC 1 cut(s) 490
BmiI GGNNCC 3 cut(s) 37, 235, 491
BmrFI CCNGG 2 cut(s) 43, 298
BmsI GCATC 2 cut(s) 37, 56
BoxI GACNNNNGTC 1 cut(s) 93
BpiI GAAGAC 1 cut(s) 675
BplI GAGNNNNNCTC 2 cut(s) 132, 164
BpmI CTGGAG 2 cut(s) 319, 434
Bpu14I TTCGAA 1 cut(s) 376
BpuEI CTTGAG 1 cut(s) 608
BsaAI YACGTR 1 cut(s) 343
BsaJI CCNNGG 3 cut(s) 42, 396, 609
Bsc4I CCNNNNNNNGG 6 cut(s) 29, 58, 62, 82, 592, 610
Bse1I ACTGG 1 cut(s) 417
Bse21I CCTNAGG 1 cut(s) 57
BseBI CCWGG 2 cut(s) 43, 298
BseDI CCNNGG 3 cut(s) 42, 396, 609
BseGI GGATG 4 cut(s) 52, 71, 98, 529
BseLI CCNNNNNNNGG 6 cut(s) 29, 58, 62, 82, 592, 610
BseMII CTCAG 3 cut(s) 48, 174, 687
BseNI ACTGG 1 cut(s) 417
BseXI GCAGC 1 cut(s) 413
BseYI CCCAGC 1 cut(s) 618
BshFI GGCC 1 cut(s) 603
BshNI GGYRCC 1 cut(s) 233
BsiSI CCGG 1 cut(s) 76
BslFI GGGAC 2 cut(s) 495, 503
BslI CCNNNNNNNGG 6 cut(s) 29, 58, 62, 82, 592, 610
BsmFI GGGAC 2 cut(s) 495, 503
BsmI GAATGC 2 cut(s) 309, 662
BsnI GGCC 1 cut(s) 603
Bsp119I TTCGAA 1 cut(s) 376
Bsp143I GATC 4 cut(s) 4, 222, 238, 595
BspACI CCGC 4 cut(s) 33, 39, 53, 82
BspANI GGCC 1 cut(s) 603
BspCNI CTCAG 3 cut(s) 49, 175, 686
BspHI TCATGA 1 cut(s) 97
BspLI GGNNCC 3 cut(s) 37, 235, 491
BspPI GGATC 3 cut(s) 12, 233, 603
BspT104I TTCGAA 1 cut(s) 376
BspT107I GGYRCC 1 cut(s) 233
BsrI ACTGG 1 cut(s) 417
BssECI CCNNGG 3 cut(s) 42, 396, 609
BssMI GATC 4 cut(s) 4, 222, 238, 595
BssT1I CCWWGG 1 cut(s) 609
Bst2UI CCWGG 2 cut(s) 43, 298
Bst4CI ACNGT 2 cut(s) 156, 547
BstAPI GCANNNNNTGC 1 cut(s) 629
BstBAI YACGTR 1 cut(s) 343
BstBI TTCGAA 1 cut(s) 376
BstDEI CTNAG 5 cut(s) 57, 120, 183, 661, 673
BstENI CCTNNNNNAGG 1 cut(s) 60
BstF5I GGATG 4 cut(s) 52, 71, 98, 529
BstHHI GCGC 1 cut(s) 15
BstKTI GATC 4 cut(s) 7, 225, 241, 598
BstMBI GATC 4 cut(s) 4, 222, 238, 595
BstMWI GCNNNNNNNGC 4 cut(s) 47, 401, 582, 629
BstNI CCWGG 2 cut(s) 43, 298
BstNSI RCATGY 1 cut(s) 499
BstPAI GACNNNNGTC 1 cut(s) 93
BstSCI CCNGG 2 cut(s) 41, 296
BstSNI TACGTA 1 cut(s) 343
BstV1I GCAGC 1 cut(s) 413
BstV2I GAAGAC 1 cut(s) 675
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
Bsu36I CCTNAGG 1 cut(s) 57
BsuRI GGCC 1 cut(s) 603
BtsCI GGATG 4 cut(s) 52, 71, 98, 529
BtsI GCAGTG 1 cut(s) 580
BtsIMutI CAGTG 1 cut(s) 580
CaiI CAGNNNCTG 1 cut(s) 680
CciI TCATGA 1 cut(s) 97
CfoI GCGC 1 cut(s) 15
Cfr13I GGNCC 1 cut(s) 490
Csp6I GTAC 1 cut(s) 234
CspCI CAANNNNNGTGG 2 cut(s) 532, 567
CviAII CATG 3 cut(s) 98, 496, 599
CviQI GTAC 1 cut(s) 234
DdeI CTNAG 5 cut(s) 57, 120, 183, 661, 673
DpnI GATC 4 cut(s) 6, 224, 240, 597
DpnII GATC 4 cut(s) 4, 222, 238, 595
DriI GACNNNNNGTC 2 cut(s) 496, 676
EaeI YGGCCR 1 cut(s) 601
Eam1105I GACNNNNNGTC 2 cut(s) 496, 676
EciI GGCGGA 1 cut(s) 28
Eco105I TACGTA 1 cut(s) 343
Eco130I CCWWGG 1 cut(s) 609
Eco47I GGWCC 1 cut(s) 490
Eco81I CCTNAGG 1 cut(s) 57
EcoNI CCTNNNNNAGG 1 cut(s) 60
EcoRII CCWGG 2 cut(s) 41, 296
EcoT14I CCWWGG 1 cut(s) 609
ErhI CCWWGG 1 cut(s) 609
FaeI CATG 3 cut(s) 101, 499, 602
FaqI GGGAC 2 cut(s) 495, 503
FatI CATG 3 cut(s) 97, 495, 598
FauI CCCGC 2 cut(s) 60, 75
FblI GTMKAC 1 cut(s) 87
Fnu4HI GCNGC 2 cut(s) 34, 402
FokI GGATG 4 cut(s) 59, 78, 105, 536
Fsp4HI GCNGC 2 cut(s) 34, 402
FspBI CTAG 2 cut(s) 174, 405
GlaI GCGC 1 cut(s) 14
GluI GCNGC 2 cut(s) 34, 402
GsaI CCCAGC 1 cut(s) 622
GsuI CTGGAG 2 cut(s) 319, 434
HaeIII GGCC 1 cut(s) 603
HapII CCGG 1 cut(s) 76
HhaI GCGC 1 cut(s) 15
Hin1II CATG 3 cut(s) 101, 499, 602
Hin6I GCGC 1 cut(s) 13
HinP1I GCGC 1 cut(s) 13
HinfI GANTC 8 cut(s) 113, 167, 272, 283, 590, 671, 677, 683
HpaII CCGG 1 cut(s) 76
HphI GGTGA 1 cut(s) 566
Hpy166II GTNNAC 1 cut(s) 88
Hpy188I TCNGA 9 cut(s) 9, 184, 193, 259, 364, 595, 676, 682, 688
Hpy188III TCNNGA 2 cut(s) 98, 138
Hpy8I GTNNAC 1 cut(s) 88
HpyAV CCTTC 1 cut(s) 475
HpyCH4III ACNGT 2 cut(s) 156, 547
HpyCH4IV ACGT 1 cut(s) 342
HpyCH4V TGCA 3 cut(s) 307, 387, 632
HpyF10VI GCNNNNNNNGC 4 cut(s) 47, 401, 582, 629
HpyF3I CTNAG 5 cut(s) 57, 120, 183, 661, 673
HpySE526I ACGT 1 cut(s) 342
Hsp92II CATG 3 cut(s) 101, 499, 602
HspAI GCGC 1 cut(s) 13
KpnI GGTACC 1 cut(s) 237
Kzo9I GATC 4 cut(s) 4, 222, 238, 595
LmnI GCTCC 1 cut(s) 41
Lsp1109I GCAGC 1 cut(s) 413
LweI GCATC 2 cut(s) 37, 56
MaeI CTAG 2 cut(s) 174, 405
MaeII ACGT 1 cut(s) 342
MaeIII GTNAC 1 cut(s) 201
MalI GATC 4 cut(s) 6, 224, 240, 597
MboI GATC 4 cut(s) 4, 222, 238, 595
MboII GAAGA 4 cut(s) 155, 232, 665, 680
MflI RGATCY 1 cut(s) 4
MlsI TGGCCA 1 cut(s) 603
MluCI AATT 4 cut(s) 251, 371, 501, 638
MluNI TGGCCA 1 cut(s) 603
MlyI GAGTC 5 cut(s) 176, 292, 599, 665, 686
MmeI TCCRAC 1 cut(s) 573
Mox20I TGGCCA 1 cut(s) 603
MscI TGGCCA 1 cut(s) 603
MseI TTAA 1 cut(s) 700
Msp20I TGGCCA 1 cut(s) 603
MspI CCGG 1 cut(s) 76
MspR9I CCNGG 2 cut(s) 43, 298
Mva1269I GAATGC 2 cut(s) 309, 662
MvaI CCWGG 2 cut(s) 43, 298
MwoI GCNNNNNNNGC 4 cut(s) 47, 401, 582, 629
NdeII GATC 4 cut(s) 4, 222, 238, 595
NlaIII CATG 3 cut(s) 101, 499, 602
NlaIV GGNNCC 3 cut(s) 37, 235, 491
NmeAIII GCCGAG 1 cut(s) 421
NspI RCATGY 1 cut(s) 499
NspV TTCGAA 1 cut(s) 376
PagI TCATGA 1 cut(s) 97
PciI ACATGT 1 cut(s) 495
PcsI WCGNNNNNNNCGW 1 cut(s) 339
PctI GAATGC 2 cut(s) 309, 662
PfeI GAWTC 3 cut(s) 113, 272, 683
PkrI GCNGC 2 cut(s) 35, 403
PleI GAGTC 5 cut(s) 175, 291, 598, 665, 685
PpsI GAGTC 5 cut(s) 175, 291, 598, 665, 685
Ppu21I YACGTR 1 cut(s) 343
PscI ACATGT 1 cut(s) 495
PshAI GACNNNNGTC 1 cut(s) 93
Psp6I CCWGG 2 cut(s) 41, 296
PspFI CCCAGC 1 cut(s) 618
PspGI CCWGG 2 cut(s) 41, 296
PspN4I GGNNCC 3 cut(s) 37, 235, 491
PspPI GGNCC 1 cut(s) 490
PsrI GAACNNNNNNTAC 2 cut(s) 186, 218
PstNI CAGNNNCTG 1 cut(s) 680
PsuI RGATCY 1 cut(s) 4
RsaI GTAC 1 cut(s) 235
RsaNI GTAC 1 cut(s) 234
SaqAI TTAA 1 cut(s) 700
SatI GCNGC 2 cut(s) 34, 402
Sau3AI GATC 4 cut(s) 4, 222, 238, 595
Sau96I GGNCC 1 cut(s) 490
SchI GAGTC 5 cut(s) 176, 292, 599, 665, 686
ScrFI CCNGG 2 cut(s) 43, 298
SetI ASST 9 cut(s) 25, 299, 345, 384, 406, 424, 442, 486, 620
SfaNI GCATC 2 cut(s) 37, 56
SfuI TTCGAA 1 cut(s) 376
SinI GGWCC 1 cut(s) 490
SmlI CTYRAG 1 cut(s) 587
SmoI CTYRAG 1 cut(s) 587
SnaBI TACGTA 1 cut(s) 343
Sse9I AATT 4 cut(s) 251, 371, 501, 638
SsiI CCGC 4 cut(s) 33, 39, 53, 82
SspMI CTAG 2 cut(s) 174, 405
StyD4I CCNGG 2 cut(s) 41, 296
StyI CCWWGG 1 cut(s) 609
TaaI ACNGT 2 cut(s) 156, 547
TaiI ACGT 1 cut(s) 345
TaqI TCGA 1 cut(s) 376
TasI AATT 4 cut(s) 251, 371, 501, 638
TauI GCSGC 1 cut(s) 36
TfiI GAWTC 3 cut(s) 113, 272, 683
Tru1I TTAA 1 cut(s) 700
Tru9I TTAA 1 cut(s) 700
TscAI CASTG 1 cut(s) 587
TseI GCWGC 1 cut(s) 401
TspDTI ATGAA 4 cut(s) 494, 579, 666, 681
TspGWI ACGGA 1 cut(s) 105
TspRI CASTG 1 cut(s) 587
VpaK11BI GGWCC 1 cut(s) 490
XagI CCTNNNNNAGG 1 cut(s) 60
XapI RAATTY 1 cut(s) 371
XceI RCATGY 1 cut(s) 499
XmiI GTMKAC 1 cut(s) 87
XspI CTAG 2 cut(s) 174, 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.