Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0000181

Physical Location & Seq

Genomic Coordinates Forward (+)

19439964 .. 19442539

Gene Structure 2576 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G008830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGCCGGCAACGCCCGAGAAGAACCTTTTTTTTAGCAGAGTTTTGCAAAGAGAAACAATTAAACCTGCACCACCTGGTGAGGAAGACTGGCTTCCGTTCAAGTTTTATTTCCTTAAACATACCTGCTGGTGGTATGATCATCCAATGGACTGTACTTGTGTAGACGCCAATTCGGATACTTCATTTGGTTCAATCCTTTACTCTGGTAGAAACAACAGATCAGGGTACACACCAGCTATGATTCGCCACCTTTCGAGGATTGGTATTCCACAAGAGGAGCAAACAACTATCCTCGACAAACTATTTGGAATGCTTCAGACGACCTTCCCTGAGGGCCGCATTCTTGTCTTGATAGCTCAAGTGACTGCGTTTGTTGGGCAGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000209 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010154 GO:0010498 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0022412 GO:0022414 GO:0030154 GO:0030163 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0036211 GO:0040007 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0051603 GO:0060560 GO:0061458 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zf-rbx1

Protein Analysis

128

Amino Acids

14.72

Weight (kDa)

6.27

Isoelectric Point (pI)

54.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000181)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica	MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica	Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis	pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis	RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata	RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora	Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa	Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha	Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana	Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	73, 131
AccI	GTMKAC	1 cut(s)	162
AciI	CCGC	1 cut(s)	337
AcuI	CTGAAG	1 cut(s)	299
AcyI	GRCGYC	1 cut(s)	165
AdeI	CACNNNGTG	1 cut(s)	77
AfaI	GTAC	2 cut(s)	154, 227
AfiI	CCNNNNNNNGG	1 cut(s)	129
AgsI	TTSAA	2 cut(s)	100, 192
AjnI	CCWGG	1 cut(s)	73
AluBI	AGCT	2 cut(s)	236, 356
AluI	AGCT	2 cut(s)	236, 356
Ama87I	CYCGRG	1 cut(s)	14
AoxI	GGCC	1 cut(s)	334
ArsI	GACNNNNNNTTYG	2 cut(s)	287, 319
AspS9I	GGNCC	1 cut(s)	334
AsuHPI	GGTGA	1 cut(s)	89
AvaI	CYCGRG	1 cut(s)	14
AxyI	CCTNAGG	1 cut(s)	330
BbsI	GAAGAC	1 cut(s)	90
BciT130I	CCWGG	1 cut(s)	75
BciVI	GTATCC	1 cut(s)	169
BclI	TGATCA	1 cut(s)	136
BfuAI	ACCTGC	2 cut(s)	73, 131
BfuI	GTATCC	1 cut(s)	169
BisI	GCNGC	1 cut(s)	337
BlsI	GCNGC	1 cut(s)	338
Bme1390I	CCNGG	1 cut(s)	75
BmeT110I	CYCGRG	1 cut(s)	14
BmgT120I	GGNCC	1 cut(s)	334
BmrFI	CCNGG	1 cut(s)	75
BpiI	GAAGAC	1 cut(s)	90
BpuEI	CTTGAG	1 cut(s)	342
BsaHI	GRCGYC	1 cut(s)	165
Bsc4I	CCNNNNNNNGG	1 cut(s)	129
Bse118I	RCCGGY	1 cut(s)	4
Bse1I	ACTGG	1 cut(s)	92
Bse21I	CCTNAGG	1 cut(s)	330
BseBI	CCWGG	1 cut(s)	75
BseGI	GGATG	1 cut(s)	139
BseLI	CCNNNNNNNGG	1 cut(s)	129
BseMII	CTCAG	1 cut(s)	321
BseNI	ACTGG	1 cut(s)	92
BseRI	GAGGAG	1 cut(s)	290
BsgI	GTGCAG	1 cut(s)	51
BshFI	GGCC	1 cut(s)	336
BsiHKCI	CYCGRG	1 cut(s)	14
BsiSI	CCGG	1 cut(s)	5
BslI	CCNNNNNNNGG	1 cut(s)	129
BsmI	GAATGC	2 cut(s)	315, 339
BsnI	GGCC	1 cut(s)	336
BsoBI	CYCGRG	1 cut(s)	14
Bsp143I	GATC	2 cut(s)	136, 218
BspACI	CCGC	1 cut(s)	337
BspANI	GGCC	1 cut(s)	336
BspCNI	CTCAG	1 cut(s)	322
BspMI	ACCTGC	2 cut(s)	73, 131
BsrFI	RCCGGY	1 cut(s)	4
BsrI	ACTGG	1 cut(s)	92
BssAI	RCCGGY	1 cut(s)	4
BssMI	GATC	2 cut(s)	136, 218
BssNI	GRCGYC	1 cut(s)	165
Bst2UI	CCWGG	1 cut(s)	75
Bst4CI	ACNGT	1 cut(s)	152
BstACI	GRCGYC	1 cut(s)	165
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	1 cut(s)	330
BstF5I	GGATG	1 cut(s)	139
BstKTI	GATC	2 cut(s)	139, 221
BstMBI	GATC	2 cut(s)	136, 218
BstMWI	GCNNNNNNNGC	1 cut(s)	10
BstNI	CCWGG	1 cut(s)	75
BstSCI	CCNGG	1 cut(s)	73
BstV2I	GAAGAC	1 cut(s)	90
Bsu36I	CCTNAGG	1 cut(s)	330
BsuI	GTATCC	1 cut(s)	169
BsuRI	GGCC	1 cut(s)	336
BtsCI	GGATG	1 cut(s)	139
BveI	ACCTGC	2 cut(s)	73, 131
Cac8I	GCNNGC	1 cut(s)	6
Cfr10I	RCCGGY	1 cut(s)	4
Cfr13I	GGNCC	1 cut(s)	334
CseI	GACGC	1 cut(s)	173
CsiI	ACCWGGT	1 cut(s)	73
Csp6I	GTAC	2 cut(s)	153, 226
CviJI	RGCY	4 cut(s)	91, 236, 336, 356
CviKI_1	RGCY	4 cut(s)	91, 236, 336, 356
CviQI	GTAC	2 cut(s)	153, 226
DdeI	CTNAG	1 cut(s)	330
DpnI	GATC	2 cut(s)	138, 220
DpnII	GATC	2 cut(s)	136, 218
DraIII	CACNNNGTG	1 cut(s)	77
Eco57I	CTGAAG	1 cut(s)	299
Eco81I	CCTNAGG	1 cut(s)	330
Eco88I	CYCGRG	1 cut(s)	14
EcoRII	CCWGG	1 cut(s)	73
FaiI	YATR	3 cut(s)	120, 135, 239
FalI	AAGNNNNNCTT	2 cut(s)	75, 107
FbaI	TGATCA	1 cut(s)	136
FblI	GTMKAC	1 cut(s)	162
Fnu4HI	GCNGC	1 cut(s)	337
FokI	GGATG	1 cut(s)	126
Fsp4HI	GCNGC	1 cut(s)	337
GluI	GCNGC	1 cut(s)	337
HaeIII	GGCC	1 cut(s)	336
HapII	CCGG	1 cut(s)	5
HgaI	GACGC	1 cut(s)	173
Hin1I	GRCGYC	1 cut(s)	165
HinfI	GANTC	1 cut(s)	241
HpaII	CCGG	1 cut(s)	5
HphI	GGTGA	1 cut(s)	89
Hpy166II	GTNNAC	2 cut(s)	163, 228
Hpy188I	TCNGA	2 cut(s)	175, 318
Hpy188III	TCNNGA	1 cut(s)	349
Hpy8I	GTNNAC	2 cut(s)	163, 228
HpyAV	CCTTC	1 cut(s)	334
HpyCH4III	ACNGT	1 cut(s)	152
HpyCH4V	TGCA	2 cut(s)	46, 68
HpyF10VI	GCNNNNNNNGC	1 cut(s)	10
HpyF3I	CTNAG	1 cut(s)	330
Hsp92I	GRCGYC	1 cut(s)	165
KroI	GCCGGC	1 cut(s)	4
KroNI	GCCGGC	1 cut(s)	6
Ksp22I	TGATCA	1 cut(s)	136
Kzo9I	GATC	2 cut(s)	136, 218
LmnI	GCTCC	1 cut(s)	277
MabI	ACCWGGT	1 cut(s)	73
MaeIII	GTNAC	1 cut(s)	361
MalI	GATC	2 cut(s)	138, 220
MboI	GATC	2 cut(s)	136, 218
MboII	GAAGA	2 cut(s)	31, 95
MluCI	AATT	2 cut(s)	57, 169
MnlI	CCTC	5 cut(s)	73, 249, 268, 302, 325
MroNI	GCCGGC	1 cut(s)	4
MseI	TTAA	2 cut(s)	60, 114
MspI	CCGG	1 cut(s)	5
MspR9I	CCNGG	1 cut(s)	75
Mva1269I	GAATGC	2 cut(s)	315, 339
MvaI	CCWGG	1 cut(s)	75
MwoI	GCNNNNNNNGC	1 cut(s)	10
NaeI	GCCGGC	1 cut(s)	6
NdeII	GATC	2 cut(s)	136, 218
NgoMIV	GCCGGC	1 cut(s)	4
NmuCI	GTSAC	1 cut(s)	361
PctI	GAATGC	2 cut(s)	315, 339
PdiI	GCCGGC	1 cut(s)	6
PfeI	GAWTC	1 cut(s)	241
PkrI	GCNGC	1 cut(s)	338
Psp6I	CCWGG	1 cut(s)	73
PspGI	CCWGG	1 cut(s)	73
PspPI	GGNCC	1 cut(s)	334
RsaI	GTAC	2 cut(s)	154, 227
RsaNI	GTAC	2 cut(s)	153, 226
SaqAI	TTAA	2 cut(s)	60, 114
SatI	GCNGC	1 cut(s)	337
Sau3AI	GATC	2 cut(s)	136, 218
Sau96I	GGNCC	1 cut(s)	334
ScrFI	CCNGG	1 cut(s)	75
SetI	ASST	8 cut(s)	27, 67, 76, 125, 238, 252, 326, 358
SexAI	ACCWGGT	1 cut(s)	73
SmlI	CTYRAG	1 cut(s)	357
SmoI	CTYRAG	1 cut(s)	357
Sse9I	AATT	2 cut(s)	57, 169
SsiI	CCGC	1 cut(s)	337
StyD4I	CCNGG	1 cut(s)	73
TaaI	ACNGT	1 cut(s)	152
TaqI	TCGA	2 cut(s)	254, 294
TasI	AATT	2 cut(s)	57, 169
TatI	WGTACW	1 cut(s)	152
TauI	GCSGC	1 cut(s)	339
TfiI	GAWTC	1 cut(s)	241
Tru1I	TTAA	2 cut(s)	60, 114
Tru9I	TTAA	2 cut(s)	60, 114
TseFI	GTSAC	1 cut(s)	361
Tsp45I	GTSAC	1 cut(s)	361
TspDTI	ATGAA	1 cut(s)	171
TspGWI	ACGGA	1 cut(s)	84
XmiI	GTMKAC	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.