Rw5G024330

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000181
Physical Location & Seq
Forward (+)
34572096 .. 34574667
2572 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G024330.1

Sequence Viewer

Length: 456 bp
ATGTATATGAATTATGATCCAACAACATTCTCAGGGTGCCGCAGATTAGGTAGGCGAAGATGTCTACTAATTTTAATGATATCGATATTTTTGTTCAAAAAAAAAAAAAAAATCCGGCCCTCACAAAGATTTTCCGACTTTCAACAGGTACCGGCTCAAAAGACTCGAAGCTTGCTGGAATACGAGGAAGAAGTATTTGACGTTTGTCGTGTTTGCTTGAAGGACAAGGAACACTGGACATTTGATTGCCCGTACCTGGATCGCATCCCGAACCTGAAGACGGCAACTGTTGGCAGTGGCTATGCAATAGTTTGTAGGGGATGTCATGTGTTGGGTGGCCATGGTGATAGGGCCTGGGTAGGACGTGCCATTATGAAGTCTTGTAGTATTTGTGAGGTACCAGCTTCTCACTGGAATTACGAATGCCCAAAAAACCCCGAACCCCAGAAAGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

151

Amino Acids

17.54

Weight (kDa)

9.24

Isoelectric Point (pI)

55.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000181)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 148, 397
AccB1I GGYRCC 3 cut(s) 36, 148, 397
AccI GTMKAC 1 cut(s) 64
AciI CCGC 1 cut(s) 40
AclWI GGATC 2 cut(s) 11, 267
AcoI YGGCCR 1 cut(s) 337
AcuI CTGAAG 1 cut(s) 296
AfaI GTAC 3 cut(s) 150, 254, 399
AfiI CCNNNNNNNGG 2 cut(s) 256, 280
AgsI TTSAA 3 cut(s) 97, 143, 220
AjiI CACGTC 1 cut(s) 365
AjnI CCWGG 2 cut(s) 255, 353
AluBI AGCT 2 cut(s) 171, 404
AluI AGCT 2 cut(s) 171, 404
AlwI GGATC 2 cut(s) 11, 267
AoxI GGCC 3 cut(s) 116, 337, 351
Asp718I GGTACC 2 cut(s) 148, 397
AspS9I GGNCC 2 cut(s) 117, 351
AsuHPI GGTGA 1 cut(s) 356
BalI TGGCCA 1 cut(s) 339
BanI GGYRCC 3 cut(s) 36, 148, 397
BbsI GAAGAC 1 cut(s) 284
BceAI ACGGC 1 cut(s) 297
BciT130I CCWGG 2 cut(s) 257, 355
BisI GCNGC 1 cut(s) 40
BlsI GCNGC 1 cut(s) 41
Bme1390I CCNGG 2 cut(s) 257, 355
BmgBI CACGTC 1 cut(s) 365
BmgT120I GGNCC 2 cut(s) 117, 351
BmiI GGNNCC 3 cut(s) 38, 150, 399
BmrFI CCNGG 2 cut(s) 257, 355
BmsI GCATC 1 cut(s) 273
BoxI GACNNNNGTC 1 cut(s) 204
BpiI GAAGAC 1 cut(s) 284
Bsa29I ATCGAT 1 cut(s) 83
BsaJI CCNNGG 2 cut(s) 340, 354
Bsc4I CCNNNNNNNGG 2 cut(s) 256, 280
Bse118I RCCGGY 1 cut(s) 151
Bse1I ACTGG 2 cut(s) 239, 416
BseBI CCWGG 2 cut(s) 257, 355
BseCI ATCGAT 1 cut(s) 83
BseDI CCNNGG 2 cut(s) 340, 354
BseGI GGATG 2 cut(s) 264, 326
BseLI CCNNNNNNNGG 2 cut(s) 256, 280
BseMII CTCAG 1 cut(s) 45
BseNI ACTGG 2 cut(s) 239, 416
BshFI GGCC 3 cut(s) 118, 339, 353
BshNI GGYRCC 3 cut(s) 36, 148, 397
BshVI ATCGAT 1 cut(s) 83
BsiSI CCGG 2 cut(s) 115, 152
BslI CCNNNNNNNGG 2 cut(s) 256, 280
BsmI GAATGC 1 cut(s) 428
BsnI GGCC 3 cut(s) 118, 339, 353
Bsp143I GATC 2 cut(s) 16, 259
Bsp19I CCATGG 1 cut(s) 340
BspACI CCGC 1 cut(s) 40
BspANI GGCC 3 cut(s) 118, 339, 353
BspCNI CTCAG 1 cut(s) 44
BspDI ATCGAT 1 cut(s) 83
BspLI GGNNCC 3 cut(s) 38, 150, 399
BspPI GGATC 2 cut(s) 11, 267
BspT107I GGYRCC 3 cut(s) 36, 148, 397
BsrFI RCCGGY 1 cut(s) 151
BsrI ACTGG 2 cut(s) 239, 416
BssAI RCCGGY 1 cut(s) 151
BssECI CCNNGG 2 cut(s) 340, 354
BssMI GATC 2 cut(s) 16, 259
BssT1I CCWWGG 1 cut(s) 340
Bst2UI CCWGG 2 cut(s) 257, 355
Bst4CI ACNGT 1 cut(s) 289
BstC8I GCNNGC 1 cut(s) 173
BstDEI CTNAG 1 cut(s) 31
BstDSI CCRYGG 1 cut(s) 340
BstF5I GGATG 2 cut(s) 264, 326
BstKTI GATC 2 cut(s) 19, 262
BstMBI GATC 2 cut(s) 16, 259
BstNI CCWGG 2 cut(s) 257, 355
BstPAI GACNNNNGTC 1 cut(s) 204
BstSCI CCNGG 2 cut(s) 255, 353
BstV2I GAAGAC 1 cut(s) 284
Bsu15I ATCGAT 1 cut(s) 83
BsuRI GGCC 3 cut(s) 118, 339, 353
BsuTUI ATCGAT 1 cut(s) 83
BtgI CCRYGG 1 cut(s) 340
BtrI CACGTC 1 cut(s) 365
BtsCI GGATG 2 cut(s) 264, 326
BtsI GCAGTG 1 cut(s) 301
BtsIMutI CAGTG 3 cut(s) 232, 301, 409
Cac8I GCNNGC 1 cut(s) 173
Cfr10I RCCGGY 1 cut(s) 151
Cfr13I GGNCC 2 cut(s) 117, 351
ClaI ATCGAT 1 cut(s) 83
Csp6I GTAC 3 cut(s) 149, 253, 398
CviAII CATG 2 cut(s) 326, 341
CviJI RGCY 7 cut(s) 118, 155, 171, 300, 339, 353, 404
CviKI_1 RGCY 7 cut(s) 118, 155, 171, 300, 339, 353, 404
CviQI GTAC 3 cut(s) 149, 253, 398
DdeI CTNAG 1 cut(s) 31
DpnI GATC 2 cut(s) 18, 261
DpnII GATC 2 cut(s) 16, 259
EaeI YGGCCR 1 cut(s) 337
Eco130I CCWWGG 1 cut(s) 340
Eco32I GATATC 1 cut(s) 81
Eco57I CTGAAG 1 cut(s) 296
EcoO109I RGGNCCY 1 cut(s) 351
EcoRII CCWGG 2 cut(s) 255, 353
EcoRV GATATC 1 cut(s) 81
EcoT14I CCWWGG 1 cut(s) 340
ErhI CCWWGG 1 cut(s) 340
FaeI CATG 2 cut(s) 329, 344
FaiI YATR 8 cut(s) 6, 8, 15, 303, 327, 342, 374, 454
FatI CATG 2 cut(s) 325, 340
FblI GTMKAC 1 cut(s) 64
Fnu4HI GCNGC 1 cut(s) 40
FokI GGATG 2 cut(s) 251, 333
Fsp4HI GCNGC 1 cut(s) 40
GluI GCNGC 1 cut(s) 40
HaeIII GGCC 3 cut(s) 118, 339, 353
HapII CCGG 2 cut(s) 115, 152
Hin1II CATG 2 cut(s) 329, 344
HindIII AAGCTT 1 cut(s) 169
HinfI GANTC 1 cut(s) 163
HpaII CCGG 2 cut(s) 115, 152
HphI GGTGA 1 cut(s) 356
Hpy166II GTNNAC 1 cut(s) 65
Hpy188I TCNGA 1 cut(s) 136
Hpy188III TCNNGA 1 cut(s) 268
Hpy8I GTNNAC 1 cut(s) 65
HpyAV CCTTC 1 cut(s) 214
HpyCH4III ACNGT 1 cut(s) 289
HpyCH4IV ACGT 2 cut(s) 201, 364
HpyCH4V TGCA 1 cut(s) 305
HpyF3I CTNAG 1 cut(s) 31
HpySE526I ACGT 2 cut(s) 201, 364
Hsp92II CATG 2 cut(s) 329, 344
KpnI GGTACC 2 cut(s) 152, 401
Kzo9I GATC 2 cut(s) 16, 259
LweI GCATC 1 cut(s) 273
MaeII ACGT 2 cut(s) 201, 364
MalI GATC 2 cut(s) 18, 261
MboI GATC 2 cut(s) 16, 259
MboII GAAGA 3 cut(s) 69, 200, 289
MlsI TGGCCA 1 cut(s) 339
MluCI AATT 3 cut(s) 10, 69, 415
MluNI TGGCCA 1 cut(s) 339
MlyI GAGTC 1 cut(s) 157
MmeI TCCRAC 2 cut(s) 44, 159
MnlI CCTC 3 cut(s) 130, 178, 388
Mox20I TGGCCA 1 cut(s) 339
MscI TGGCCA 1 cut(s) 339
MseI TTAA 1 cut(s) 74
Msp20I TGGCCA 1 cut(s) 339
MspI CCGG 2 cut(s) 115, 152
MspR9I CCNGG 2 cut(s) 257, 355
Mva1269I GAATGC 1 cut(s) 428
MvaI CCWGG 2 cut(s) 257, 355
NcoI CCATGG 1 cut(s) 340
NdeII GATC 2 cut(s) 16, 259
NlaIII CATG 2 cut(s) 329, 344
NlaIV GGNNCC 3 cut(s) 38, 150, 399
PctI GAATGC 1 cut(s) 428
PkrI GCNGC 1 cut(s) 41
PleI GAGTC 1 cut(s) 157
PpsI GAGTC 1 cut(s) 157
PshAI GACNNNNGTC 1 cut(s) 204
Psp6I CCWGG 2 cut(s) 255, 353
PspGI CCWGG 2 cut(s) 255, 353
PspN4I GGNNCC 3 cut(s) 38, 150, 399
PspPI GGNCC 2 cut(s) 117, 351
RsaI GTAC 3 cut(s) 150, 254, 399
RsaNI GTAC 3 cut(s) 149, 253, 398
SaqAI TTAA 1 cut(s) 74
SatI GCNGC 1 cut(s) 40
Sau3AI GATC 2 cut(s) 16, 259
Sau96I GGNCC 2 cut(s) 117, 351
SchI GAGTC 1 cut(s) 157
ScrFI CCNGG 2 cut(s) 257, 355
SetI ASST 9 cut(s) 52, 150, 173, 204, 258, 276, 367, 399, 406
SfaNI GCATC 1 cut(s) 273
Sse9I AATT 3 cut(s) 10, 69, 415
SsiI CCGC 1 cut(s) 40
StyD4I CCNGG 2 cut(s) 255, 353
StyI CCWWGG 1 cut(s) 340
TaaI ACNGT 1 cut(s) 289
TaiI ACGT 2 cut(s) 204, 367
TaqI TCGA 2 cut(s) 83, 166
TasI AATT 3 cut(s) 10, 69, 415
TauI GCSGC 1 cut(s) 42
Tru1I TTAA 1 cut(s) 74
Tru9I TTAA 1 cut(s) 74
TscAI CASTG 3 cut(s) 239, 301, 416
TspDTI ATGAA 2 cut(s) 23, 389
TspRI CASTG 3 cut(s) 239, 301, 416
XcmI CCANNNNNNNNNTGG 1 cut(s) 408
XmiI GTMKAC 1 cut(s) 64
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.