Rmu_sc0001102.1_g000003

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001102.1
OG0000181
Physical Location & Seq
Forward (+)
19873 .. 22351
2479 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001102.1_g000003.1.cds

Sequence Viewer

Length: 702 bp
atgggctctaagttgtgggccagtatgcagggagccttcccaccttcatttattagtagtgatggtgggccttcgtgggcttttaggttggtatatgacccagacgacgccatgtctcttgtcgaatcagaattctccaaggatccgaacccgtacctgaaccaggtcccgccggaggaggacgacaagatccaggctcatggaaaacacaaggctgctgaagactctctgtctcaacttgaagtagaggaagaagaggaagaagatgaagaaggagaagaagaagcagaagaagaagaagaagaagaagcagaagaagaagaagaaggagaagaatttgagttgtgtgatgtttgtttgaaggacaaggaacactggacggatgaatgcccgtacttggtttgtatcccaaacccaatggaagtaactcttggcaaaggttattatatggtttgtgtggactgtaatgtgtcgggtggccactctgatatagtcggtacacaatgtaatgtgtggggtggccaccctgataggaggtggaaaggacgtgctattgtcaaggtctgcggtatttgtgcgggcgtacgccactggtctgcagagtgcccaaataagcacttactacaaaagcaaaagagtctgttggagtgtgctgctgaatatcggtcttggttggctaccaaaaaatgtcaacctgcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

233

Amino Acids

26.22

Weight (kDa)

4.39

Isoelectric Point (pI)

64.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000181)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 170, 567, 578
AclWI GGATC 3 cut(s) 137, 150, 184
AcoI YGGCCR 2 cut(s) 478, 520
AcsI RAATTY 2 cut(s) 131, 335
AcuI CTGAAG 1 cut(s) 240
AcyI GRCGYC 1 cut(s) 108
AfaI GTAC 4 cut(s) 155, 395, 499, 585
AfiI CCNNNNNNNGG 3 cut(s) 163, 175, 397
AgsI TTSAA 2 cut(s) 242, 361
AhdI GACNNNNNGTC 2 cut(s) 112, 229
AjiI CACGTC 1 cut(s) 548
AjnI CCWGG 2 cut(s) 162, 192
AjuI GAANNNNNNNTTGG 2 cut(s) 414, 446
Alw26I GTCTC 2 cut(s) 120, 237
AlwI GGATC 3 cut(s) 137, 150, 184
AoxI GGCC 4 cut(s) 18, 68, 478, 520
ApeKI GCWGC 2 cut(s) 215, 653
ApoI RAATTY 2 cut(s) 131, 335
AspS9I GGNCC 3 cut(s) 18, 68, 166
AvaII GGWCC 1 cut(s) 166
BaeGI GKGCMC 1 cut(s) 608
BalI TGGCCA 2 cut(s) 480, 522
BamHI GGATCC 1 cut(s) 142
BanII GRGCYC 1 cut(s) 8
BbsI GAAGAC 1 cut(s) 228
BbvI GCAGC 2 cut(s) 202, 640
BccI CCATC 1 cut(s) 56
BciT130I CCWGG 2 cut(s) 164, 194
BciVI GTATCC 1 cut(s) 416
BcoDI GTCTC 2 cut(s) 120, 237
BfmI CTRYAG 1 cut(s) 597
BfuI GTATCC 1 cut(s) 416
BisI GCNGC 2 cut(s) 216, 654
BlsI GCNGC 2 cut(s) 217, 655
Bme1390I CCNGG 2 cut(s) 164, 194
Bme18I GGWCC 1 cut(s) 166
BmeRI GACNNNNNGTC 2 cut(s) 112, 229
BmgBI CACGTC 1 cut(s) 548
BmgT120I GGNCC 3 cut(s) 18, 68, 166
BmiI GGNNCC 3 cut(s) 34, 144, 168
BmrFI CCNGG 2 cut(s) 164, 194
BpiI GAAGAC 1 cut(s) 228
BsaHI GRCGYC 1 cut(s) 108
BsaJI CCNNGG 1 cut(s) 138
Bsc4I CCNNNNNNNGG 3 cut(s) 163, 175, 397
Bse1I ACTGG 3 cut(s) 21, 380, 596
BseBI CCWGG 2 cut(s) 164, 194
BseDI CCNNGG 1 cut(s) 138
BseGI GGATG 1 cut(s) 388
BseLI CCNNNNNNNGG 3 cut(s) 163, 175, 397
BseNI ACTGG 3 cut(s) 21, 380, 596
BseRI GAGGAG 1 cut(s) 191
BseSI GKGCMC 1 cut(s) 608
BseXI GCAGC 2 cut(s) 202, 640
BshFI GGCC 4 cut(s) 20, 70, 480, 522
BsiSI CCGG 1 cut(s) 173
BsiWI CGTACG 1 cut(s) 583
BslFI GGGAC 1 cut(s) 152
BslI CCNNNNNNNGG 3 cut(s) 163, 175, 397
BsmAI GTCTC 2 cut(s) 120, 237
BsmFI GGGAC 1 cut(s) 152
BsmI GAATGC 1 cut(s) 392
BsnI GGCC 4 cut(s) 20, 70, 480, 522
Bsp1286I GDGCHC 2 cut(s) 8, 608
Bsp143I GATC 2 cut(s) 142, 189
BspACI CCGC 3 cut(s) 170, 567, 578
BspANI GGCC 4 cut(s) 20, 70, 480, 522
BspLI GGNNCC 3 cut(s) 34, 144, 168
BspMAI CTGCAG 1 cut(s) 601
BspPI GGATC 3 cut(s) 137, 150, 184
BsrI ACTGG 3 cut(s) 21, 380, 596
BssECI CCNNGG 1 cut(s) 138
BssMI GATC 2 cut(s) 142, 189
BssNI GRCGYC 1 cut(s) 108
BssT1I CCWWGG 1 cut(s) 138
Bst2UI CCWGG 2 cut(s) 164, 194
Bst4CI ACNGT 1 cut(s) 464
Bst6I CTCTTC 1 cut(s) 249
BstACI GRCGYC 1 cut(s) 108
BstC8I GCNNGC 1 cut(s) 580
BstDEI CTNAG 1 cut(s) 9
BstENI CCTNNNNNAGG 1 cut(s) 161
BstF5I GGATG 1 cut(s) 388
BstKTI GATC 2 cut(s) 145, 192
BstMAI GTCTC 2 cut(s) 120, 237
BstMBI GATC 2 cut(s) 142, 189
BstNI CCWGG 2 cut(s) 164, 194
BstSCI CCNGG 2 cut(s) 162, 192
BstSFI CTRYAG 1 cut(s) 597
BstSLI GKGCMC 1 cut(s) 608
BstV1I GCAGC 2 cut(s) 202, 640
BstV2I GAAGAC 1 cut(s) 228
BstX2I RGATCY 2 cut(s) 142, 189
BstXI CCANNNNNNTGG 1 cut(s) 200
BstYI RGATCY 2 cut(s) 142, 189
BsuI GTATCC 1 cut(s) 416
BsuRI GGCC 4 cut(s) 20, 70, 480, 522
BtrI CACGTC 1 cut(s) 548
BtsCI GGATG 1 cut(s) 388
BtsIMutI CAGTG 2 cut(s) 373, 589
Cac8I GCNNGC 1 cut(s) 580
Cfr13I GGNCC 3 cut(s) 18, 68, 166
CseI GACGC 1 cut(s) 116
CsiI ACCWGGT 1 cut(s) 162
Csp6I GTAC 4 cut(s) 154, 394, 498, 584
CviAII CATG 2 cut(s) 112, 200
CviQI GTAC 4 cut(s) 154, 394, 498, 584
DdeI CTNAG 1 cut(s) 9
DpnI GATC 2 cut(s) 144, 191
DpnII GATC 2 cut(s) 142, 189
DriI GACNNNNNGTC 2 cut(s) 112, 229
EaeI YGGCCR 2 cut(s) 478, 520
Eam1104I CTCTTC 1 cut(s) 249
Eam1105I GACNNNNNGTC 2 cut(s) 112, 229
EarI CTCTTC 1 cut(s) 249
Eco130I CCWWGG 1 cut(s) 138
Eco24I GRGCYC 1 cut(s) 8
Eco47I GGWCC 1 cut(s) 166
Eco57I CTGAAG 1 cut(s) 240
EcoNI CCTNNNNNAGG 1 cut(s) 161
EcoO109I RGGNCCY 1 cut(s) 166
EcoRI GAATTC 1 cut(s) 131
EcoRII CCWGG 2 cut(s) 162, 192
EcoT14I CCWWGG 1 cut(s) 138
EcoT38I GRGCYC 1 cut(s) 8
ErhI CCWWGG 1 cut(s) 138
FaeI CATG 2 cut(s) 115, 203
FaiI YATR 8 cut(s) 26, 94, 96, 113, 201, 447, 449, 491
FalI AAGNNNNNCTT 2 cut(s) 414, 446
FaqI GGGAC 1 cut(s) 152
FatI CATG 2 cut(s) 111, 199
FauI CCCGC 2 cut(s) 177, 571
Fnu4HI GCNGC 2 cut(s) 216, 654
FokI GGATG 1 cut(s) 395
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 2 cut(s) 216, 654
GluI GCNGC 2 cut(s) 216, 654
HaeIII GGCC 4 cut(s) 20, 70, 480, 522
HapII CCGG 1 cut(s) 173
HgaI GACGC 1 cut(s) 116
Hin1I GRCGYC 1 cut(s) 108
Hin1II CATG 2 cut(s) 115, 203
HincII GTYRAC 1 cut(s) 692
HindII GTYRAC 1 cut(s) 692
HinfI GANTC 3 cut(s) 125, 224, 637
HpaII CCGG 1 cut(s) 173
Hpy166II GTNNAC 3 cut(s) 460, 500, 692
Hpy188I TCNGA 3 cut(s) 130, 147, 487
Hpy8I GTNNAC 3 cut(s) 460, 500, 692
Hpy99I CGWCG 1 cut(s) 110
HpyAV CCTTC 6 cut(s) 46, 54, 81, 266, 320, 355
HpyCH4III ACNGT 1 cut(s) 464
HpyCH4IV ACGT 1 cut(s) 547
HpyCH4V TGCA 2 cut(s) 28, 599
HpyF3I CTNAG 1 cut(s) 9
HpySE526I ACGT 1 cut(s) 547
Hsp92I GRCGYC 1 cut(s) 108
Hsp92II CATG 2 cut(s) 115, 203
Kzo9I GATC 2 cut(s) 142, 189
LmnI GCTCC 1 cut(s) 32
Lsp1109I GCAGC 2 cut(s) 202, 640
MabI ACCWGGT 1 cut(s) 162
MaeII ACGT 1 cut(s) 547
MaeIII GTNAC 1 cut(s) 424
MalI GATC 2 cut(s) 144, 191
MboI GATC 2 cut(s) 142, 189
MflI RGATCY 2 cut(s) 142, 189
MhlI GDGCHC 2 cut(s) 8, 608
MlsI TGGCCA 2 cut(s) 480, 522
MluCI AATT 2 cut(s) 131, 335
MluNI TGGCCA 2 cut(s) 480, 522
MlyI GAGTC 2 cut(s) 218, 646
MmeI TCCRAC 1 cut(s) 624
MnlI CCTC 5 cut(s) 169, 172, 241, 250, 528
Mox20I TGGCCA 2 cut(s) 480, 522
MscI TGGCCA 2 cut(s) 480, 522
Msp20I TGGCCA 2 cut(s) 480, 522
MspI CCGG 1 cut(s) 173
MspR9I CCNGG 2 cut(s) 164, 194
Mva1269I GAATGC 1 cut(s) 392
MvaI CCWGG 2 cut(s) 164, 194
NdeII GATC 2 cut(s) 142, 189
NlaIII CATG 2 cut(s) 115, 203
NlaIV GGNNCC 3 cut(s) 34, 144, 168
PctI GAATGC 1 cut(s) 392
PfeI GAWTC 1 cut(s) 125
Pfl23II CGTACG 1 cut(s) 583
PkrI GCNGC 2 cut(s) 217, 655
PleI GAGTC 2 cut(s) 218, 645
PpsI GAGTC 2 cut(s) 218, 645
PpuMI RGGWCCY 1 cut(s) 166
Psp5II RGGWCCY 1 cut(s) 166
Psp6I CCWGG 2 cut(s) 162, 192
PspGI CCWGG 2 cut(s) 162, 192
PspLI CGTACG 1 cut(s) 583
PspN4I GGNNCC 3 cut(s) 34, 144, 168
PspPI GGNCC 3 cut(s) 18, 68, 166
PspPPI RGGWCCY 1 cut(s) 166
PstI CTGCAG 1 cut(s) 601
PsuI RGATCY 2 cut(s) 142, 189
RsaI GTAC 4 cut(s) 155, 395, 499, 585
RsaNI GTAC 4 cut(s) 154, 394, 498, 584
SatI GCNGC 2 cut(s) 216, 654
Sau3AI GATC 2 cut(s) 142, 189
Sau96I GGNCC 3 cut(s) 18, 68, 166
SchI GAGTC 2 cut(s) 218, 646
ScrFI CCNGG 2 cut(s) 164, 194
SduI GDGCHC 2 cut(s) 8, 608
SetI ASST 9 cut(s) 46, 89, 159, 168, 442, 539, 550, 564, 697
SexAI ACCWGGT 1 cut(s) 162
SfcI CTRYAG 1 cut(s) 597
SinI GGWCC 1 cut(s) 166
Sse9I AATT 2 cut(s) 131, 335
SsiI CCGC 3 cut(s) 170, 567, 578
StyD4I CCNGG 2 cut(s) 162, 192
StyI CCWWGG 1 cut(s) 138
TaaI ACNGT 1 cut(s) 464
TaiI ACGT 1 cut(s) 550
TaqI TCGA 1 cut(s) 123
TaqII GACCGA 1 cut(s) 654
TasI AATT 2 cut(s) 131, 335
TfiI GAWTC 1 cut(s) 125
TscAI CASTG 2 cut(s) 380, 596
TseI GCWGC 2 cut(s) 215, 653
TspDTI ATGAA 3 cut(s) 36, 282, 399
TspGWI ACGGA 1 cut(s) 395
TspRI CASTG 2 cut(s) 380, 596
VpaK11BI GGWCC 1 cut(s) 166
XagI CCTNNNNNAGG 1 cut(s) 161
XapI RAATTY 2 cut(s) 131, 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.