Rh3BG086400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0000181
Physical Location & Seq
Reverse (-)
6776266 .. 6793872
17607 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG086400.1

Sequence Viewer

Length: 765 bp
ATGCTGGTGGGAAGCGGCGGGCCAGTGGTAGACGAGGGCGATAAGTCTGATGGTGGAAAGGTCAAAACCTCAAAGCGTTCACCTACTCCTGGCAAGATTTTCACTTTTGTTTTAAGATTTGGAGCTTTCCTTTGTCACAGGTCACGCACTGCTGTAACCAAGATACAAGACGTTCTGAGCTCTGGTTTTGTAATAATTGTATCAGCCCTTGATTTGTTAGCAAAATTCTCAATCATAAAGTTGCTGACTTGCATAAGAAAGGACCTGCTCTTAGCCAGTTTAGAAGCTACATTACCAGATGAGAGCTCAGAATCAATCAGCAAGAAAGCAGGTATGGAGGTGGCGAGGTCATCGGAATGTTTCCAAAGGCAGGACCTGGCCGTCGTCCCCAGGCCTGATGCCACCAAGGCGGAAGAGCCAAAGGCTCGATGGCCTTATATCAGCAAGTTACCTGATGGTAGGACGATCATAATCTCAAAGATGAACCCACCTACTGAGCGTCCTTGCGCCGCTTATACCAAGACGCGCCCTGATGATCCTGGTACTTTCTCTCAAAAATCAAAGCTCCGTGTCACTGGTCGGCCCATCCCTCGTCCGGCAGTCACTGGCCAAACTCGATGCCCGTACCTTGATCTTCTCCCAAAGAATGCAACTGTTAGCAGTGGCTGTGACGTAGTTTGTACGGGTTGTAATCGTTCATTCGTTTGTTTTCAGGGGGCTGCTAGCTGTAACCAAGACGCTGGTCGTGCTGAGCTCAGGTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

254

Amino Acids

27.45

Weight (kDa)

9.43

Isoelectric Point (pI)

46.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000181)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 380
Acc36I ACCTGC 2 cut(s) 273, 320
AccI GTMKAC 1 cut(s) 30
AccII CGCG 1 cut(s) 526
AciI CCGC 4 cut(s) 15, 18, 410, 510
AclWI GGATC 1 cut(s) 530
AcoI YGGCCR 2 cut(s) 378, 607
AcsI RAATTY 1 cut(s) 224
AfaI GTAC 3 cut(s) 544, 626, 682
AfiI CCNNNNNNNGG 3 cut(s) 89, 370, 595
AjnI CCWGG 4 cut(s) 88, 375, 389, 538
AluBI AGCT 7 cut(s) 125, 180, 287, 306, 565, 726, 754
AluI AGCT 7 cut(s) 125, 180, 287, 306, 565, 726, 754
Alw21I GWGCWC 3 cut(s) 182, 308, 756
AlwI GGATC 1 cut(s) 530
AlwNI CAGNNNCTG 3 cut(s) 376, 605, 666
AoxI GGCC 6 cut(s) 20, 378, 392, 431, 581, 607
ApeKI GCWGC 1 cut(s) 719
ApoI RAATTY 1 cut(s) 224
AspLEI GCGC 2 cut(s) 509, 528
AspS9I GGNCC 4 cut(s) 20, 262, 373, 582
AsuHPI GGTGA 1 cut(s) 72
AsuNHI GCTAGC 1 cut(s) 722
AvaII GGWCC 2 cut(s) 262, 373
BalI TGGCCA 1 cut(s) 609
BanII GRGCYC 3 cut(s) 182, 308, 756
BarI GAAGNNNNNNTAC 2 cut(s) 276, 308
Bbv12I GWGCWC 3 cut(s) 182, 308, 756
BbvI GCAGC 1 cut(s) 706
BccI CCATC 4 cut(s) 44, 423, 449, 593
BceAI ACGGC 1 cut(s) 365
BciT130I CCWGG 4 cut(s) 90, 377, 391, 540
BfaI CTAG 1 cut(s) 723
BfuAI ACCTGC 2 cut(s) 273, 320
BglI GCCNNNNNGGC 1 cut(s) 407
BisI GCNGC 3 cut(s) 16, 510, 720
BlpI GCTNAGC 1 cut(s) 750
BlsI GCNGC 3 cut(s) 17, 511, 721
Bme1390I CCNGG 4 cut(s) 90, 377, 391, 540
Bme18I GGWCC 2 cut(s) 262, 373
BmgT120I GGNCC 4 cut(s) 20, 262, 373, 582
BmrFI CCNGG 4 cut(s) 90, 377, 391, 540
BmsI GCATC 2 cut(s) 388, 608
BmtI GCTAGC 1 cut(s) 726
BoxI GACNNNNGTC 1 cut(s) 741
Bpu10I CCTNAGC 1 cut(s) 755
Bpu1102I GCTNAGC 1 cut(s) 750
BsaBI GATNNNNATC 1 cut(s) 470
BsaJI CCNNGG 2 cut(s) 389, 405
Bsc4I CCNNNNNNNGG 3 cut(s) 89, 370, 595
Bse1I ACTGG 4 cut(s) 23, 276, 580, 610
Bse8I GATNNNNATC 1 cut(s) 470
BseBI CCWGG 4 cut(s) 90, 377, 391, 540
BseDI CCNNGG 2 cut(s) 389, 405
BseGI GGATG 1 cut(s) 585
BseJI GATNNNNATC 1 cut(s) 470
BseLI CCNNNNNNNGG 3 cut(s) 89, 370, 595
BseMII CTCAG 4 cut(s) 167, 321, 486, 741
BseNI ACTGG 4 cut(s) 23, 276, 580, 610
BseXI GCAGC 1 cut(s) 706
Bsh1236I CGCG 1 cut(s) 526
BshFI GGCC 6 cut(s) 22, 380, 394, 433, 583, 609
BsiHKAI GWGCWC 3 cut(s) 182, 308, 756
BsiSI CCGG 1 cut(s) 596
BslFI GGGAC 1 cut(s) 371
BslI CCNNNNNNNGG 3 cut(s) 89, 370, 595
BsmFI GGGAC 1 cut(s) 371
BsmI GAATGC 1 cut(s) 652
BsnI GGCC 6 cut(s) 22, 380, 394, 433, 583, 609
Bsp1286I GDGCHC 3 cut(s) 182, 308, 756
Bsp143I GATC 3 cut(s) 465, 535, 631
Bsp1720I GCTNAGC 1 cut(s) 750
BspACI CCGC 4 cut(s) 15, 18, 410, 510
BspANI GGCC 6 cut(s) 22, 380, 394, 433, 583, 609
BspCNI CTCAG 4 cut(s) 168, 320, 487, 742
BspFNI CGCG 1 cut(s) 526
BspMI ACCTGC 2 cut(s) 273, 320
BspOI GCTAGC 1 cut(s) 726
BspPI GGATC 1 cut(s) 530
BspQI GCTCTTC 1 cut(s) 408
BsrI ACTGG 4 cut(s) 23, 276, 580, 610
BssECI CCNNGG 2 cut(s) 389, 405
BssMI GATC 3 cut(s) 465, 535, 631
BssT1I CCWWGG 1 cut(s) 405
Bst2UI CCWGG 4 cut(s) 90, 377, 391, 540
Bst4CI ACNGT 1 cut(s) 655
Bst6I CTCTTC 1 cut(s) 408
BstC8I GCNNGC 2 cut(s) 20, 724
BstDEI CTNAG 6 cut(s) 176, 271, 307, 495, 750, 755
BstF5I GGATG 1 cut(s) 585
BstFNI CGCG 1 cut(s) 526
BstHHI GCGC 2 cut(s) 509, 528
BstKTI GATC 3 cut(s) 468, 538, 634
BstMBI GATC 3 cut(s) 465, 535, 631
BstMWI GCNNNNNNNGC 2 cut(s) 407, 746
BstNI CCWGG 4 cut(s) 90, 377, 391, 540
BstPAI GACNNNNGTC 1 cut(s) 741
BstSCI CCNGG 4 cut(s) 88, 375, 389, 538
BstUI CGCG 1 cut(s) 526
BstV1I GCAGC 1 cut(s) 706
BstXI CCANNNNNNTGG 1 cut(s) 740
BsuRI GGCC 6 cut(s) 22, 380, 394, 433, 583, 609
BtsCI GGATG 1 cut(s) 585
BtsI GCAGTG 2 cut(s) 147, 667
BtsIMutI CAGTG 5 cut(s) 30, 147, 573, 603, 667
BveI ACCTGC 2 cut(s) 273, 320
Cac8I GCNNGC 2 cut(s) 20, 724
CaiI CAGNNNCTG 3 cut(s) 376, 605, 666
CfoI GCGC 2 cut(s) 509, 528
Cfr13I GGNCC 4 cut(s) 20, 262, 373, 582
CseI GACGC 3 cut(s) 488, 532, 746
Csp6I GTAC 3 cut(s) 543, 625, 681
CviQI GTAC 3 cut(s) 543, 625, 681
DdeI CTNAG 6 cut(s) 176, 271, 307, 495, 750, 755
DpnI GATC 3 cut(s) 467, 537, 633
DpnII GATC 3 cut(s) 465, 535, 631
DrdI GACNNNNNNGTC 1 cut(s) 380
DseDI GACNNNNNNGTC 1 cut(s) 380
EaeI YGGCCR 2 cut(s) 378, 607
Eam1104I CTCTTC 1 cut(s) 408
EarI CTCTTC 1 cut(s) 408
EciI GGCGGA 1 cut(s) 425
Ecl136II GAGCTC 3 cut(s) 180, 306, 754
Eco130I CCWWGG 1 cut(s) 405
Eco147I AGGCCT 1 cut(s) 394
Eco24I GRGCYC 3 cut(s) 182, 308, 756
Eco47I GGWCC 2 cut(s) 262, 373
Eco53kI GAGCTC 3 cut(s) 180, 306, 754
EcoICRI GAGCTC 3 cut(s) 180, 306, 754
EcoO109I RGGNCCY 2 cut(s) 262, 373
EcoRII CCWGG 4 cut(s) 88, 375, 389, 538
EcoT14I CCWWGG 1 cut(s) 405
EcoT38I GRGCYC 3 cut(s) 182, 308, 756
ErhI CCWWGG 1 cut(s) 405
FaiI YATR 7 cut(s) 236, 254, 335, 438, 470, 516, 763
FaqI GGGAC 1 cut(s) 371
FauI CCCGC 1 cut(s) 11
FblI GTMKAC 1 cut(s) 30
Fnu4HI GCNGC 3 cut(s) 16, 510, 720
FokI GGATG 1 cut(s) 572
FriOI GRGCYC 3 cut(s) 182, 308, 756
Fsp4HI GCNGC 3 cut(s) 16, 510, 720
FspBI CTAG 1 cut(s) 723
GlaI GCGC 2 cut(s) 508, 527
GluI GCNGC 3 cut(s) 16, 510, 720
HaeIII GGCC 6 cut(s) 22, 380, 394, 433, 583, 609
HapII CCGG 1 cut(s) 596
HgaI GACGC 3 cut(s) 488, 532, 746
HhaI GCGC 2 cut(s) 509, 528
Hin6I GCGC 2 cut(s) 507, 526
HinP1I GCGC 2 cut(s) 507, 526
HinfI GANTC 1 cut(s) 311
HpaII CCGG 1 cut(s) 596
HphI GGTGA 1 cut(s) 72
Hpy166II GTNNAC 2 cut(s) 31, 80
Hpy188I TCNGA 4 cut(s) 49, 177, 310, 355
Hpy8I GTNNAC 2 cut(s) 31, 80
Hpy99I CGWCG 1 cut(s) 386
HpyCH4III ACNGT 1 cut(s) 655
HpyCH4IV ACGT 2 cut(s) 171, 672
HpyCH4V TGCA 2 cut(s) 252, 650
HpyF10VI GCNNNNNNNGC 2 cut(s) 407, 746
HpyF3I CTNAG 6 cut(s) 176, 271, 307, 495, 750, 755
HpySE526I ACGT 2 cut(s) 171, 672
HspAI GCGC 2 cut(s) 507, 526
Kzo9I GATC 3 cut(s) 465, 535, 631
LguI GCTCTTC 1 cut(s) 408
LmnI GCTCC 2 cut(s) 122, 570
Lsp1109I GCAGC 1 cut(s) 706
LweI GCATC 2 cut(s) 388, 608
MaeI CTAG 1 cut(s) 723
MaeII ACGT 2 cut(s) 171, 672
MaeIII GTNAC 8 cut(s) 134, 141, 154, 447, 571, 601, 668, 728
MalI GATC 3 cut(s) 467, 537, 633
MboI GATC 3 cut(s) 465, 535, 631
MboII GAAGA 2 cut(s) 425, 626
MhlI GDGCHC 3 cut(s) 182, 308, 756
MlsI TGGCCA 1 cut(s) 609
MluCI AATT 2 cut(s) 195, 224
MluNI TGGCCA 1 cut(s) 609
MnlI CCTC 5 cut(s) 28, 79, 331, 339, 600
Mox20I TGGCCA 1 cut(s) 609
MscI TGGCCA 1 cut(s) 609
MseI TTAA 1 cut(s) 113
MslI CAYNNNNRTG 1 cut(s) 355
Msp20I TGGCCA 1 cut(s) 609
MspI CCGG 1 cut(s) 596
MspR9I CCNGG 4 cut(s) 90, 377, 391, 540
Mva1269I GAATGC 1 cut(s) 652
MvaI CCWGG 4 cut(s) 90, 377, 391, 540
MvnI CGCG 1 cut(s) 526
MwoI GCNNNNNNNGC 2 cut(s) 407, 746
NdeII GATC 3 cut(s) 465, 535, 631
NheI GCTAGC 1 cut(s) 722
NmuCI GTSAC 5 cut(s) 134, 141, 571, 601, 668
PceI AGGCCT 1 cut(s) 394
PciSI GCTCTTC 1 cut(s) 408
PctI GAATGC 1 cut(s) 652
PfeI GAWTC 1 cut(s) 311
PkrI GCNGC 3 cut(s) 17, 511, 721
PpuMI RGGWCCY 2 cut(s) 262, 373
PshAI GACNNNNGTC 1 cut(s) 741
Psp124BI GAGCTC 3 cut(s) 182, 308, 756
Psp5II RGGWCCY 2 cut(s) 262, 373
Psp6I CCWGG 4 cut(s) 88, 375, 389, 538
PspGI CCWGG 4 cut(s) 88, 375, 389, 538
PspPI GGNCC 4 cut(s) 20, 262, 373, 582
PspPPI RGGWCCY 2 cut(s) 262, 373
PstNI CAGNNNCTG 3 cut(s) 376, 605, 666
RsaI GTAC 3 cut(s) 544, 626, 682
RsaNI GTAC 3 cut(s) 543, 625, 681
RseI CAYNNNNRTG 1 cut(s) 355
SacI GAGCTC 3 cut(s) 182, 308, 756
SapI GCTCTTC 1 cut(s) 408
SaqAI TTAA 1 cut(s) 113
SatI GCNGC 3 cut(s) 16, 510, 720
Sau3AI GATC 3 cut(s) 465, 535, 631
Sau96I GGNCC 4 cut(s) 20, 262, 373, 582
ScrFI CCNGG 4 cut(s) 90, 377, 391, 540
SduI GDGCHC 3 cut(s) 182, 308, 756
SfaNI GCATC 2 cut(s) 388, 608
SinI GGWCC 2 cut(s) 262, 373
SmiMI CAYNNNNRTG 1 cut(s) 355
Sse9I AATT 2 cut(s) 195, 224
SseBI AGGCCT 1 cut(s) 394
SsiI CCGC 4 cut(s) 15, 18, 410, 510
SspMI CTAG 1 cut(s) 723
SstI GAGCTC 3 cut(s) 182, 308, 756
StuI AGGCCT 1 cut(s) 394
StyD4I CCNGG 4 cut(s) 88, 375, 389, 538
StyI CCWWGG 1 cut(s) 405
TaaI ACNGT 1 cut(s) 655
TaiI ACGT 2 cut(s) 174, 675
TaqI TCGA 2 cut(s) 427, 616
TasI AATT 2 cut(s) 195, 224
TauI GCSGC 2 cut(s) 18, 512
TfiI GAWTC 1 cut(s) 311
Tru1I TTAA 1 cut(s) 113
Tru9I TTAA 1 cut(s) 113
TscAI CASTG 5 cut(s) 30, 154, 580, 610, 667
TseFI GTSAC 5 cut(s) 134, 141, 571, 601, 668
TseI GCWGC 1 cut(s) 719
Tsp45I GTSAC 5 cut(s) 134, 141, 571, 601, 668
TspDTI ATGAA 2 cut(s) 497, 687
TspGWI ACGGA 1 cut(s) 557
TspRI CASTG 5 cut(s) 30, 154, 580, 610, 667
VpaK11BI GGWCC 2 cut(s) 262, 373
XapI RAATTY 1 cut(s) 224
XcmI CCANNNNNNNNNTGG 1 cut(s) 426
XmiI GTMKAC 1 cut(s) 30
XspI CTAG 1 cut(s) 723
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.