RchiOBHm_Chr2g0170041

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000181
Physical Location & Seq
Forward (+)
84066448 .. 84066915
468 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ53760

Sequence Viewer

Length: 420 bp
ATGTCTCTCGAAATACCAGTCATCTCCGATGAGGATCCAAGCCGCTCTTCACTGGAGAAGAAGGCCCGATCTGGAGAGATCGGTGTGGAAGACCCAGATTCAGACTACTCAGATGGATCAGAAGAAGAAATTAAACATTGTGAAGTTTGTATGAAGGACGAGGAACACTGGTCATATGATTGCCCGTACTTGGACTATATTCCAAACCCGGAGGACACACCTGTTGGCGAGGGCTATACCATAGTTTGCATCCACTGTAATCAGAATCAGTTGAAACATGGCCACCCTGATGGAAGCTGGGTAGGACGTGCAACAAGAAATCCTTTTGATTCGAGTTTGATAATTAAAAAGCCTGGTGTGATATATCACGAGTGTGATGATGACGATGAAGTATATCTTGATTGGGAGAGTACTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

139

Amino Acids

15.78

Weight (kDa)

4.27

Isoelectric Point (pI)

51.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000181)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 45
AciI CCGC 1 cut(s) 43
AclWI GGATC 3 cut(s) 29, 42, 124
AcoI YGGCCR 1 cut(s) 280
AfaI GTAC 2 cut(s) 188, 412
AfiI CCNNNNNNNGG 1 cut(s) 190
AgsI TTSAA 1 cut(s) 274
AjiI CACGTC 1 cut(s) 308
AjnI CCWGG 1 cut(s) 352
AjuI GAANNNNNNNTTGG 2 cut(s) 31, 63
AleI CACNNNNGTG 1 cut(s) 372
AluBI AGCT 1 cut(s) 297
AluI AGCT 1 cut(s) 297
Alw26I GTCTC 1 cut(s) 9
AlwI GGATC 3 cut(s) 29, 42, 124
AoxI GGCC 2 cut(s) 63, 280
ArsI GACNNNNNNTTYG 1 cut(s) 35
AspS9I GGNCC 1 cut(s) 64
AsuC2I CCSGG 1 cut(s) 209
BalI TGGCCA 1 cut(s) 282
BamHI GGATCC 1 cut(s) 34
BauI CACGAG 1 cut(s) 368
BbsI GAAGAC 1 cut(s) 96
BccI CCATC 2 cut(s) 107, 284
BciT130I CCWGG 1 cut(s) 354
BcnI CCSGG 1 cut(s) 209
BcoDI GTCTC 1 cut(s) 9
BisI GCNGC 1 cut(s) 43
BlsI GCNGC 1 cut(s) 44
BmcAI AGTACT 1 cut(s) 412
Bme1390I CCNGG 2 cut(s) 209, 354
BmgBI CACGTC 1 cut(s) 308
BmgT120I GGNCC 1 cut(s) 64
BmiI GGNNCC 1 cut(s) 36
BmrFI CCNGG 2 cut(s) 209, 354
BmsI GCATC 1 cut(s) 258
BpiI GAAGAC 1 cut(s) 96
BpmI CTGGAG 2 cut(s) 74, 93
BpuMI CCSGG 1 cut(s) 209
BsaBI GATNNNNATC 1 cut(s) 33
Bsc4I CCNNNNNNNGG 1 cut(s) 190
Bse1I ACTGG 3 cut(s) 17, 57, 173
Bse8I GATNNNNATC 1 cut(s) 33
BseBI CCWGG 1 cut(s) 354
BseGI GGATG 1 cut(s) 249
BseJI GATNNNNATC 1 cut(s) 33
BseLI CCNNNNNNNGG 1 cut(s) 190
BseMII CTCAG 1 cut(s) 123
BseNI ACTGG 3 cut(s) 17, 57, 173
BseYI CCCAGC 1 cut(s) 297
BshFI GGCC 2 cut(s) 65, 282
BsiSI CCGG 1 cut(s) 209
BslI CCNNNNNNNGG 1 cut(s) 190
BsmAI GTCTC 1 cut(s) 9
BsnI GGCC 2 cut(s) 65, 282
Bsp143I GATC 4 cut(s) 34, 68, 78, 116
BspACI CCGC 1 cut(s) 43
BspANI GGCC 2 cut(s) 65, 282
BspCNI CTCAG 1 cut(s) 122
BspLI GGNNCC 1 cut(s) 36
BspPI GGATC 3 cut(s) 29, 42, 124
BspQI GCTCTTC 1 cut(s) 52
BsrBI CCGCTC 1 cut(s) 45
BsrI ACTGG 3 cut(s) 17, 57, 173
BssMI GATC 4 cut(s) 34, 68, 78, 116
BssSI CACGAG 1 cut(s) 368
Bst2BI CACGAG 1 cut(s) 368
Bst2UI CCWGG 1 cut(s) 354
Bst4CI ACNGT 2 cut(s) 257, 415
Bst6I CTCTTC 1 cut(s) 52
BstDEI CTNAG 1 cut(s) 109
BstF5I GGATG 1 cut(s) 249
BstKTI GATC 4 cut(s) 37, 71, 81, 119
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 4 cut(s) 34, 68, 78, 116
BstNI CCWGG 1 cut(s) 354
BstSCI CCNGG 2 cut(s) 207, 352
BstV2I GAAGAC 1 cut(s) 96
BstX2I RGATCY 1 cut(s) 34
BstXI CCANNNNNNTGG 1 cut(s) 290
BstYI RGATCY 1 cut(s) 34
BsuRI GGCC 2 cut(s) 65, 282
BtrI CACGTC 1 cut(s) 308
BtsCI GGATG 1 cut(s) 249
BtsIMutI CAGTG 3 cut(s) 50, 166, 253
Cfr13I GGNCC 1 cut(s) 64
Csp6I GTAC 2 cut(s) 187, 411
CviAII CATG 1 cut(s) 278
CviJI RGCY 6 cut(s) 42, 65, 234, 282, 297, 352
CviKI_1 RGCY 6 cut(s) 42, 65, 234, 282, 297, 352
CviQI GTAC 2 cut(s) 187, 411
DdeI CTNAG 1 cut(s) 109
DpnI GATC 4 cut(s) 36, 70, 80, 118
DpnII GATC 4 cut(s) 34, 68, 78, 116
EaeI YGGCCR 1 cut(s) 280
Eam1104I CTCTTC 1 cut(s) 52
EarI CTCTTC 1 cut(s) 52
EcoRII CCWGG 1 cut(s) 352
FaeI CATG 1 cut(s) 281
FaiI YATR 9 cut(s) 152, 175, 177, 198, 237, 242, 279, 364, 394
FalI AAGNNNNNCTT 6 cut(s) 31, 63, 307, 339, 381, 413
FatI CATG 1 cut(s) 277
FauNDI CATATG 1 cut(s) 175
Fnu4HI GCNGC 1 cut(s) 43
FokI GGATG 1 cut(s) 236
Fsp4HI GCNGC 1 cut(s) 43
GluI GCNGC 1 cut(s) 43
GsaI CCCAGC 1 cut(s) 301
GsuI CTGGAG 2 cut(s) 74, 93
HaeIII GGCC 2 cut(s) 65, 282
HapII CCGG 1 cut(s) 209
Hin1II CATG 1 cut(s) 281
HinfI GANTC 3 cut(s) 98, 265, 329
HpaII CCGG 1 cut(s) 209
Hpy188I TCNGA 5 cut(s) 28, 103, 112, 121, 264
Hpy188III TCNNGA 4 cut(s) 8, 72, 368, 398
HpyAV CCTTC 2 cut(s) 55, 148
HpyCH4III ACNGT 2 cut(s) 257, 415
HpyCH4IV ACGT 1 cut(s) 307
HpyCH4V TGCA 2 cut(s) 249, 311
HpyF3I CTNAG 1 cut(s) 109
HpySE526I ACGT 1 cut(s) 307
Hsp92II CATG 1 cut(s) 281
Kzo9I GATC 4 cut(s) 34, 68, 78, 116
LguI GCTCTTC 1 cut(s) 52
LweI GCATC 1 cut(s) 258
MaeII ACGT 1 cut(s) 307
MalI GATC 4 cut(s) 36, 70, 80, 118
MbiI CCGCTC 1 cut(s) 45
MboI GATC 4 cut(s) 34, 68, 78, 116
MboII GAAGA 5 cut(s) 39, 70, 101, 134, 137
MflI RGATCY 1 cut(s) 34
MlsI TGGCCA 1 cut(s) 282
MluCI AATT 2 cut(s) 129, 342
MluNI TGGCCA 1 cut(s) 282
MnlI CCTC 4 cut(s) 25, 154, 205, 223
Mox20I TGGCCA 1 cut(s) 282
MscI TGGCCA 1 cut(s) 282
MseI TTAA 2 cut(s) 132, 345
MslI CAYNNNNRTG 2 cut(s) 288, 372
Msp20I TGGCCA 1 cut(s) 282
MspI CCGG 1 cut(s) 209
MspR9I CCNGG 2 cut(s) 209, 354
MvaI CCWGG 1 cut(s) 354
NciI CCSGG 1 cut(s) 209
NdeI CATATG 1 cut(s) 175
NdeII GATC 4 cut(s) 34, 68, 78, 116
NlaIII CATG 1 cut(s) 281
NlaIV GGNNCC 1 cut(s) 36
OliI CACNNNNGTG 1 cut(s) 372
PciSI GCTCTTC 1 cut(s) 52
PfeI GAWTC 3 cut(s) 98, 265, 329
PkrI GCNGC 1 cut(s) 44
Psp6I CCWGG 1 cut(s) 352
PspFI CCCAGC 1 cut(s) 297
PspGI CCWGG 1 cut(s) 352
PspN4I GGNNCC 1 cut(s) 36
PspPI GGNCC 1 cut(s) 64
PsuI RGATCY 1 cut(s) 34
RsaI GTAC 2 cut(s) 188, 412
RsaNI GTAC 2 cut(s) 187, 411
RseI CAYNNNNRTG 2 cut(s) 288, 372
SapI GCTCTTC 1 cut(s) 52
SaqAI TTAA 2 cut(s) 132, 345
SatI GCNGC 1 cut(s) 43
Sau3AI GATC 4 cut(s) 34, 68, 78, 116
Sau96I GGNCC 1 cut(s) 64
ScaI AGTACT 1 cut(s) 412
ScrFI CCNGG 2 cut(s) 209, 354
SetI ASST 3 cut(s) 223, 299, 310
SfaNI GCATC 1 cut(s) 258
SmiMI CAYNNNNRTG 2 cut(s) 288, 372
Sse9I AATT 2 cut(s) 129, 342
SsiI CCGC 1 cut(s) 43
StyD4I CCNGG 2 cut(s) 207, 352
TaaI ACNGT 2 cut(s) 257, 415
TaiI ACGT 1 cut(s) 310
TaqI TCGA 2 cut(s) 9, 332
TasI AATT 2 cut(s) 129, 342
TatI WGTACW 1 cut(s) 410
TauI GCSGC 1 cut(s) 45
TfiI GAWTC 3 cut(s) 98, 265, 329
Tru1I TTAA 2 cut(s) 132, 345
Tru9I TTAA 2 cut(s) 132, 345
TscAI CASTG 3 cut(s) 57, 173, 260
TspDTI ATGAA 2 cut(s) 167, 402
TspRI CASTG 3 cut(s) 57, 173, 260
ZrmI AGTACT 1 cut(s) 412
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.