FvH4_6g01091

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000181
Physical Location & Seq
Reverse (-)
602248 .. 603457
1210 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g01091.t1

Sequence Viewer

Length: 495 bp
ATGGAACCACTAACAAGCTTCTCTGCTACTGCAGACGACCACGAGACAGAAAAGACAATTGATCCACTTAACAAGGACTTGGAGGAGAATTTGTTTATCTCGGATCTATTTGAAGAGTCTGCTGAAGACAGTTATTCATATGAAGATTCAGATGAAGATACAGATGAAGATGTATACGATTTGCCCAATGTAGATGATATGTTTTATGATTATTATTCGGTTGAAGAAGAAACTGATGATGAAGAAGAAACCCCTCGAAAGGAGCCATCTGTTTGTCAGGTTTGTTTGAAGGAGAAGGCACACTGGACAGGGTTGTGTCCCTTTCTGGATTGTATCCCAAACCCTAGGGACACAACTCTTGGTAAAAAGTATATAATAGTTTGCCAGTGTTGCGGTGAGGGTGGTGAGGAGGATCCCCACCCTGGAGAAAACTGGGTAGGACTAGCAATAAGGGATCCTGCTAGCGGGATCCCTTCCACGGAGGAAACTGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

165

Amino Acids

18.55

Weight (kDa)

4.05

Isoelectric Point (pI)

41.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000181)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 174
AciI CCGC 2 cut(s) 393, 465
AclWI GGATC 8 cut(s) 56, 111, 407, 420, 449, 462, 463, 476
AcsI RAATTY 1 cut(s) 88
AcuI CTGAAG 1 cut(s) 144
AfiI CCNNNNNNNGG 4 cut(s) 259, 422, 464, 478
AgsI TTSAA 3 cut(s) 113, 224, 289
AjnI CCWGG 1 cut(s) 421
AluBI AGCT 1 cut(s) 18
AluI AGCT 1 cut(s) 18
Alw26I GTCTC 1 cut(s) 38
AlwI GGATC 8 cut(s) 56, 111, 407, 420, 449, 462, 463, 476
ApoI RAATTY 1 cut(s) 88
AspA2I CCTAGG 1 cut(s) 344
AsuHPI GGTGA 2 cut(s) 407, 416
AsuNHI GCTAGC 1 cut(s) 461
AvrII CCTAGG 1 cut(s) 344
BamHI GGATCC 3 cut(s) 412, 454, 468
BauI CACGAG 1 cut(s) 41
BbsI GAAGAC 1 cut(s) 132
BccI CCATC 1 cut(s) 274
BciT130I CCWGG 1 cut(s) 423
BciVI GTATCC 1 cut(s) 344
BcoDI GTCTC 1 cut(s) 38
BfaI CTAG 3 cut(s) 345, 443, 462
BfmI CTRYAG 1 cut(s) 30
BfuI GTATCC 1 cut(s) 344
BlnI CCTAGG 1 cut(s) 344
Bme1390I CCNGG 1 cut(s) 423
BmiI GGNNCC 5 cut(s) 6, 264, 414, 456, 470
BmrFI CCNGG 1 cut(s) 423
BmrI ACTGGG 1 cut(s) 442
BmtI GCTAGC 1 cut(s) 465
BmuI ACTGGG 1 cut(s) 442
BpiI GAAGAC 1 cut(s) 132
BpmI CTGGAG 1 cut(s) 444
BsaJI CCNNGG 3 cut(s) 344, 421, 477
BsaXI ACNNNNNCTCC 2 cut(s) 77, 107
Bsc4I CCNNNNNNNGG 4 cut(s) 259, 422, 464, 478
Bse1I ACTGG 3 cut(s) 308, 385, 437
BseBI CCWGG 1 cut(s) 423
BseDI CCNNGG 3 cut(s) 344, 421, 477
BseLI CCNNNNNNNGG 4 cut(s) 259, 422, 464, 478
BseNI ACTGG 3 cut(s) 308, 385, 437
BseRI GAGGAG 2 cut(s) 98, 422
BslFI GGGAC 2 cut(s) 303, 362
BslI CCNNNNNNNGG 4 cut(s) 259, 422, 464, 478
BsmAI GTCTC 1 cut(s) 38
BsmFI GGGAC 2 cut(s) 303, 362
Bsp143I GATC 5 cut(s) 61, 103, 412, 454, 468
BspACI CCGC 2 cut(s) 393, 465
BspLI GGNNCC 5 cut(s) 6, 264, 414, 456, 470
BspMAI CTGCAG 1 cut(s) 34
BspOI GCTAGC 1 cut(s) 465
BspPI GGATC 8 cut(s) 56, 111, 407, 420, 449, 462, 463, 476
BsrI ACTGG 3 cut(s) 308, 385, 437
BssECI CCNNGG 3 cut(s) 344, 421, 477
BssMI GATC 5 cut(s) 61, 103, 412, 454, 468
BssNAI GTATAC 1 cut(s) 175
BssSI CACGAG 1 cut(s) 41
BssT1I CCWWGG 1 cut(s) 344
Bst1107I GTATAC 1 cut(s) 175
Bst2BI CACGAG 1 cut(s) 41
Bst2UI CCWGG 1 cut(s) 423
Bst4CI ACNGT 2 cut(s) 131, 490
Bst6I CTCTTC 1 cut(s) 108
BstC8I GCNNGC 1 cut(s) 463
BstDSI CCRYGG 1 cut(s) 477
BstKTI GATC 5 cut(s) 64, 106, 415, 457, 471
BstMAI GTCTC 1 cut(s) 38
BstMBI GATC 5 cut(s) 61, 103, 412, 454, 468
BstMWI GCNNNNNNNGC 1 cut(s) 390
BstNI CCWGG 1 cut(s) 423
BstSCI CCNGG 1 cut(s) 421
BstSFI CTRYAG 1 cut(s) 30
BstV2I GAAGAC 1 cut(s) 132
BstX2I RGATCY 4 cut(s) 103, 412, 454, 468
BstYI RGATCY 4 cut(s) 103, 412, 454, 468
BstZ17I GTATAC 1 cut(s) 175
BsuI GTATCC 1 cut(s) 344
BtgI CCRYGG 1 cut(s) 477
BtsIMutI CAGTG 2 cut(s) 301, 392
Cac8I GCNNGC 1 cut(s) 463
CviJI RGCY 2 cut(s) 18, 265
CviKI_1 RGCY 2 cut(s) 18, 265
DpnI GATC 5 cut(s) 63, 105, 414, 456, 470
DpnII GATC 5 cut(s) 61, 103, 412, 454, 468
Eam1104I CTCTTC 1 cut(s) 108
EarI CTCTTC 1 cut(s) 108
Eco130I CCWWGG 1 cut(s) 344
Eco57I CTGAAG 1 cut(s) 144
EcoRII CCWGG 1 cut(s) 421
EcoT14I CCWWGG 1 cut(s) 344
ErhI CCWWGG 1 cut(s) 344
FaiI YATR 7 cut(s) 139, 141, 175, 200, 207, 372, 374
FaqI GGGAC 2 cut(s) 303, 362
FauI CCCGC 1 cut(s) 458
FauNDI CATATG 1 cut(s) 139
FblI GTMKAC 1 cut(s) 174
FspBI CTAG 3 cut(s) 345, 443, 462
GsuI CTGGAG 1 cut(s) 444
HindIII AAGCTT 1 cut(s) 16
HinfI GANTC 2 cut(s) 116, 146
HphI GGTGA 2 cut(s) 407, 416
Hpy166II GTNNAC 1 cut(s) 175
Hpy188I TCNGA 2 cut(s) 103, 151
Hpy188III TCNNGA 1 cut(s) 326
Hpy8I GTNNAC 1 cut(s) 175
HpyAV CCTTC 3 cut(s) 283, 289, 483
HpyCH4III ACNGT 2 cut(s) 131, 490
HpyCH4V TGCA 1 cut(s) 32
HpyF10VI GCNNNNNNNGC 1 cut(s) 390
Kzo9I GATC 5 cut(s) 61, 103, 412, 454, 468
LmnI GCTCC 1 cut(s) 262
LpnPI CCDG 9 cut(s) 263, 289, 294, 311, 398, 408, 418, 435, 471
MaeI CTAG 3 cut(s) 345, 443, 462
MalI GATC 5 cut(s) 63, 105, 414, 456, 470
MboI GATC 5 cut(s) 61, 103, 412, 454, 468
MboII GAAGA 9 cut(s) 125, 137, 155, 167, 179, 236, 239, 254, 257
MfeI CAATTG 1 cut(s) 57
MflI RGATCY 4 cut(s) 103, 412, 454, 468
MluCI AATT 2 cut(s) 57, 88
MlyI GAGTC 1 cut(s) 125
MnlI CCTC 6 cut(s) 76, 264, 391, 400, 403, 475
MseI TTAA 1 cut(s) 69
MspR9I CCNGG 1 cut(s) 423
MunI CAATTG 1 cut(s) 57
MvaI CCWGG 1 cut(s) 423
MwoI GCNNNNNNNGC 1 cut(s) 390
NdeI CATATG 1 cut(s) 139
NdeII GATC 5 cut(s) 61, 103, 412, 454, 468
NheI GCTAGC 1 cut(s) 461
NlaIV GGNNCC 5 cut(s) 6, 264, 414, 456, 470
PfeI GAWTC 1 cut(s) 146
PleI GAGTC 1 cut(s) 124
PpsI GAGTC 1 cut(s) 124
Psp6I CCWGG 1 cut(s) 421
PspGI CCWGG 1 cut(s) 421
PspN4I GGNNCC 5 cut(s) 6, 264, 414, 456, 470
PstI CTGCAG 1 cut(s) 34
PsuI RGATCY 4 cut(s) 103, 412, 454, 468
SaqAI TTAA 1 cut(s) 69
Sau3AI GATC 5 cut(s) 61, 103, 412, 454, 468
SchI GAGTC 1 cut(s) 125
ScrFI CCNGG 1 cut(s) 423
SetI ASST 2 cut(s) 20, 282
SfcI CTRYAG 1 cut(s) 30
Sse9I AATT 2 cut(s) 57, 88
SsiI CCGC 2 cut(s) 393, 465
SspMI CTAG 3 cut(s) 345, 443, 462
StyD4I CCNGG 1 cut(s) 421
StyI CCWWGG 1 cut(s) 344
TaaI ACNGT 2 cut(s) 131, 490
TaqI TCGA 1 cut(s) 256
TasI AATT 2 cut(s) 57, 88
TfiI GAWTC 1 cut(s) 146
Tru1I TTAA 1 cut(s) 69
Tru9I TTAA 1 cut(s) 69
TscAI CASTG 2 cut(s) 308, 392
TspDTI ATGAA 5 cut(s) 126, 156, 168, 180, 255
TspGWI ACGGA 1 cut(s) 494
TspRI CASTG 2 cut(s) 308, 392
XapI RAATTY 1 cut(s) 88
XmaJI CCTAGG 1 cut(s) 344
XmiI GTMKAC 1 cut(s) 174
XspI CTAG 3 cut(s) 345, 443, 462
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.