Rw5G013700

Histone deacetylase HDT1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000181
Physical Location & Seq
Reverse (-)
16240404 .. 16244919
4516 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G013700.1

Sequence Viewer

Length: 972 bp
ATGTCGTCTCTGTCTTGGCGGGAACTCCGGGACCTGGAATACGCAGGGCGACGACCCGACCCGTTTGAATCATTGGGATTCCGTTTGCCACCAGCTGACGTTCTCCGCCGCCTCGCCCGGGATTATCCTGATACCGTGAAGATTCCAGATCCATTGGCGGGCACATCTGCCTCTCCCTACCCTAGGGCTCCTGAAGCACCCCTGGCTGCTCCCCTGACTCCTCACCCTTTAAGTTTTTTTGACGATGCATATACCATACAGAAGCTCCAAACAGAAAAATGTATGTATTGTACAAAGGTACACGGTATTGCATCTTGCTCCTACACGAGACGTGTCTCAAAGAATGCACCTGTTGGCCCTGGCTGTGAACTAGTTTGTAGGATCTGTGAAAGTCCGTTTTCAGGCACCTGTTGTGGTCTAGATGAAGGCCGTGCTATTCTCAAAGAGTGCATAATTTGTGGAGCGTACGGTGACCACTGGCCTAGATGGTGCCCACGCAACAATCGAGTCGACAAGAAACTTTTGGACCTTCCTCCTGGTGTCTTTTACGTGGATTTCTCACGCGGCGCTAGTGCTCCAGGAAAAGTTGAACAGAAGGAGCCTGCAAAGCCAGCTTCAGTTAAGAGCAATGCTGTCAAAGACGATGACCCAGAGGTACTTAAGAGCAATGCTGTCAAAGACGATGACCCAGAGGATGATCATGACAGTGACGATGAAGATGATGAAACCCCTACCCCTAAGAAGCCTGGATCTAAGAGAAGAGCCCGAGCCTCTGCATCAGCTAAAACTCCAGTTTCTGCTAAGAAGGCAAAGATAGATACTGATGGTGAGAAGGGCGCCCACAGCGATACGCCACACCCTACAGAGAAGGGAAAGACACCTCCTACTGATAAGCAACTCCAAAGTCCGTCATTTGGTTCTGATGGTGGTCTTCAGTCTCACAATGAGGACAATGATAGTGCTAAAATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

323

Amino Acids

35.23

Weight (kDa)

6.03

Isoelectric Point (pI)

52.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000181)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 404, 489, 836
AccI GTMKAC 1 cut(s) 510
AccII CGCG 1 cut(s) 564
AciI CCGC 5 cut(s) 19, 106, 109, 158, 564
AclWI GGATC 3 cut(s) 143, 389, 757
AcuI CTGAAG 3 cut(s) 213, 600, 917
AcyI GRCGYC 1 cut(s) 837
AfaI GTAC 4 cut(s) 292, 300, 467, 657
AfiI CCNNNNNNNGG 6 cut(s) 34, 118, 158, 183, 401, 914
AflII CTTAAG 1 cut(s) 659
AflIII ACRYGT 1 cut(s) 331
AgsI TTSAA 2 cut(s) 68, 590
AhlI ACTAGT 1 cut(s) 370
AjiI CACGTC 1 cut(s) 332
AjnI CCWGG 6 cut(s) 33, 201, 358, 535, 577, 745
AluBI AGCT 4 cut(s) 95, 265, 614, 782
AluI AGCT 4 cut(s) 95, 265, 614, 782
Alw21I GWGCWC 1 cut(s) 577
Alw26I GTCTC 4 cut(s) 12, 322, 340, 942
AlwI GGATC 3 cut(s) 143, 389, 757
AlwNI CAGNNNCTG 1 cut(s) 797
Ama87I CYCGRG 2 cut(s) 117, 765
AoxI GGCC 3 cut(s) 355, 427, 479
ApeKI GCWGC 1 cut(s) 206
AspA2I CCTAGG 1 cut(s) 182
AspLEI GCGC 2 cut(s) 569, 839
AspS9I GGNCC 3 cut(s) 31, 356, 526
AsuC2I CCSGG 3 cut(s) 29, 118, 119
AsuHPI GGTGA 3 cut(s) 215, 482, 839
AvaI CYCGRG 2 cut(s) 117, 765
AvaII GGWCC 2 cut(s) 31, 526
AvrII CCTAGG 1 cut(s) 182
BaeGI GKGCMC 2 cut(s) 164, 494
BanI GGYRCC 3 cut(s) 404, 489, 836
BanII GRGCYC 2 cut(s) 190, 766
BauI CACGAG 1 cut(s) 325
BbsI GAAGAC 1 cut(s) 923
Bbv12I GWGCWC 1 cut(s) 577
BbvI GCAGC 1 cut(s) 193
BccI CCATC 3 cut(s) 480, 818, 917
BceAI ACGGC 1 cut(s) 414
BciT130I CCWGG 6 cut(s) 35, 203, 360, 537, 579, 747
BclI TGATCA 1 cut(s) 697
BcnI CCSGG 3 cut(s) 29, 118, 119
BcoDI GTCTC 4 cut(s) 12, 322, 340, 942
BcuI ACTAGT 1 cut(s) 370
BfaI CTAG 5 cut(s) 183, 371, 419, 483, 570
BfmI CTRYAG 1 cut(s) 861
BfoI RGCGCY 2 cut(s) 570, 840
BfrI CTTAAG 1 cut(s) 659
BisI GCNGC 3 cut(s) 109, 207, 565
BlnI CCTAGG 1 cut(s) 182
BlsI GCNGC 3 cut(s) 110, 208, 566
Bme1390I CCNGG 9 cut(s) 29, 35, 118, 119, 203, 360, 537, 579, 747
Bme18I GGWCC 2 cut(s) 31, 526
BmeT110I CYCGRG 2 cut(s) 117, 765
BmgBI CACGTC 1 cut(s) 332
BmgT120I GGNCC 3 cut(s) 31, 356, 526
BmiI GGNNCC 6 cut(s) 32, 189, 406, 491, 600, 838
BmrFI CCNGG 9 cut(s) 29, 35, 118, 119, 203, 360, 537, 579, 747
BmsI GCATC 3 cut(s) 235, 320, 785
BpiI GAAGAC 1 cut(s) 923
BpmI CTGGAG 2 cut(s) 561, 774
BpuMI CCSGG 3 cut(s) 29, 118, 119
BsaAI YACGTR 1 cut(s) 550
BsaHI GRCGYC 1 cut(s) 837
BsaJI CCNNGG 4 cut(s) 117, 182, 201, 358
BsaXI ACNNNNNCTCC 2 cut(s) 249, 279
Bsc4I CCNNNNNNNGG 6 cut(s) 34, 118, 158, 183, 401, 914
Bse1I ACTGG 2 cut(s) 482, 791
Bse3DI GCAATG 2 cut(s) 634, 673
BseBI CCWGG 6 cut(s) 35, 203, 360, 537, 579, 747
BseDI CCNNGG 4 cut(s) 117, 182, 201, 358
BseGI GGATG 1 cut(s) 700
BseLI CCNNNNNNNGG 6 cut(s) 34, 118, 158, 183, 401, 914
BseMI GCAATG 2 cut(s) 634, 673
BseNI ACTGG 2 cut(s) 482, 791
BseRI GAGGAG 1 cut(s) 210
BseSI GKGCMC 2 cut(s) 164, 494
BseXI GCAGC 1 cut(s) 193
Bsh1236I CGCG 1 cut(s) 564
BshFI GGCC 3 cut(s) 357, 429, 481
BshNI GGYRCC 3 cut(s) 404, 489, 836
BsiHKAI GWGCWC 1 cut(s) 577
BsiHKCI CYCGRG 2 cut(s) 117, 765
BsiSI CCGG 2 cut(s) 28, 118
BsiWI CGTACG 1 cut(s) 465
BslFI GGGAC 1 cut(s) 44
BslI CCNNNNNNNGG 6 cut(s) 34, 118, 158, 183, 401, 914
BsmAI GTCTC 4 cut(s) 12, 322, 340, 942
BsmBI CGTCTC 2 cut(s) 12, 322
BsmFI GGGAC 1 cut(s) 44
BsmI GAATGC 1 cut(s) 349
BsnI GGCC 3 cut(s) 357, 429, 481
BsoBI CYCGRG 2 cut(s) 117, 765
Bsp1286I GDGCHC 5 cut(s) 164, 190, 494, 577, 766
Bsp1407I TGTACA 1 cut(s) 290
Bsp143I GATC 4 cut(s) 148, 381, 697, 749
BspACI CCGC 5 cut(s) 19, 106, 109, 158, 564
BspANI GGCC 3 cut(s) 357, 429, 481
BspFNI CGCG 1 cut(s) 564
BspHI TCATGA 1 cut(s) 700
BspLI GGNNCC 6 cut(s) 32, 189, 406, 491, 600, 838
BspPI GGATC 3 cut(s) 143, 389, 757
BspQI GCTCTTC 1 cut(s) 754
BspT107I GGYRCC 3 cut(s) 404, 489, 836
BspTI CTTAAG 1 cut(s) 659
BsrDI GCAATG 2 cut(s) 634, 673
BsrGI TGTACA 1 cut(s) 290
BsrI ACTGG 2 cut(s) 482, 791
BssECI CCNNGG 4 cut(s) 117, 182, 201, 358
BssMI GATC 4 cut(s) 148, 381, 697, 749
BssNI GRCGYC 1 cut(s) 837
BssSI CACGAG 1 cut(s) 325
BssT1I CCWWGG 1 cut(s) 182
Bst2BI CACGAG 1 cut(s) 325
Bst2UI CCWGG 6 cut(s) 35, 203, 360, 537, 579, 747
Bst4CI ACNGT 4 cut(s) 136, 305, 470, 707
Bst6I CTCTTC 1 cut(s) 754
BstACI GRCGYC 1 cut(s) 837
BstAFI CTTAAG 1 cut(s) 659
BstAUI TGTACA 1 cut(s) 290
BstBAI YACGTR 1 cut(s) 550
BstC8I GCNNGC 3 cut(s) 160, 603, 612
BstDEI CTNAG 3 cut(s) 738, 753, 801
BstEII GGTNACC 1 cut(s) 470
BstENI CCTNNNNNAGG 1 cut(s) 181
BstF5I GGATG 1 cut(s) 700
BstFNI CGCG 1 cut(s) 564
BstH2I RGCGCY 2 cut(s) 570, 840
BstHHI GCGC 2 cut(s) 569, 839
BstKTI GATC 4 cut(s) 151, 384, 700, 752
BstMAI GTCTC 4 cut(s) 12, 322, 340, 942
BstMBI GATC 4 cut(s) 148, 381, 697, 749
BstMWI GCNNNNNNNGC 6 cut(s) 194, 203, 607, 611, 806, 843
BstNI CCWGG 6 cut(s) 35, 203, 360, 537, 579, 747
BstPI GGTNACC 1 cut(s) 470
BstSCI CCNGG 9 cut(s) 27, 33, 116, 117, 201, 358, 535, 577, 745
BstSFI CTRYAG 1 cut(s) 861
BstSLI GKGCMC 2 cut(s) 164, 494
BstUI CGCG 1 cut(s) 564
BstV1I GCAGC 1 cut(s) 193
BstV2I GAAGAC 1 cut(s) 923
BstX2I RGATCY 3 cut(s) 148, 381, 749
BstYI RGATCY 3 cut(s) 148, 381, 749
BsuRI GGCC 3 cut(s) 357, 429, 481
BtrI CACGTC 1 cut(s) 332
BtsCI GGATG 1 cut(s) 700
BtsIMutI CAGTG 2 cut(s) 475, 712
Cac8I GCNNGC 3 cut(s) 160, 603, 612
CaiI CAGNNNCTG 1 cut(s) 797
CciI TCATGA 1 cut(s) 700
CfoI GCGC 2 cut(s) 569, 839
Cfr13I GGNCC 3 cut(s) 31, 356, 526
Cfr9I CCCGGG 1 cut(s) 117
Csp6I GTAC 4 cut(s) 291, 299, 466, 656
CviAII CATG 1 cut(s) 701
CviQI GTAC 4 cut(s) 291, 299, 466, 656
DdeI CTNAG 3 cut(s) 738, 753, 801
DinI GGCGCC 1 cut(s) 838
DpnI GATC 4 cut(s) 150, 383, 699, 751
DpnII GATC 4 cut(s) 148, 381, 697, 749
Eam1104I CTCTTC 1 cut(s) 754
EarI CTCTTC 1 cut(s) 754
EciI GGCGGA 1 cut(s) 95
Eco130I CCWWGG 1 cut(s) 182
Eco24I GRGCYC 2 cut(s) 190, 766
Eco47I GGWCC 2 cut(s) 31, 526
Eco57I CTGAAG 3 cut(s) 213, 600, 917
Eco88I CYCGRG 2 cut(s) 117, 765
Eco91I GGTNACC 1 cut(s) 470
EcoNI CCTNNNNNAGG 1 cut(s) 181
EcoO109I RGGNCCY 1 cut(s) 31
EcoO65I GGTNACC 1 cut(s) 470
EcoRII CCWGG 6 cut(s) 33, 201, 358, 535, 577, 745
EcoT14I CCWWGG 1 cut(s) 182
EcoT22I ATGCAT 1 cut(s) 250
EcoT38I GRGCYC 2 cut(s) 190, 766
EgeI GGCGCC 1 cut(s) 838
EheI GGCGCC 1 cut(s) 838
ErhI CCWWGG 1 cut(s) 182
Esp3I CGTCTC 2 cut(s) 12, 322
FaeI CATG 1 cut(s) 704
FaiI YATR 6 cut(s) 250, 252, 257, 284, 452, 702
FaqI GGGAC 1 cut(s) 44
FatI CATG 1 cut(s) 700
FauI CCCGC 2 cut(s) 12, 151
FbaI TGATCA 1 cut(s) 697
FblI GTMKAC 1 cut(s) 510
Fnu4HI GCNGC 3 cut(s) 109, 207, 565
FokI GGATG 1 cut(s) 707
FriOI GRGCYC 2 cut(s) 190, 766
Fsp4HI GCNGC 3 cut(s) 109, 207, 565
FspBI CTAG 5 cut(s) 183, 371, 419, 483, 570
GlaI GCGC 2 cut(s) 568, 838
GluI GCNGC 3 cut(s) 109, 207, 565
GsuI CTGGAG 2 cut(s) 561, 774
HaeII RGCGCY 2 cut(s) 570, 840
HaeIII GGCC 3 cut(s) 357, 429, 481
HapII CCGG 2 cut(s) 28, 118
HhaI GCGC 2 cut(s) 569, 839
Hin1I GRCGYC 1 cut(s) 837
Hin1II CATG 1 cut(s) 704
Hin6I GCGC 2 cut(s) 567, 837
HinP1I GCGC 2 cut(s) 567, 837
HincII GTYRAC 1 cut(s) 511
HindII GTYRAC 1 cut(s) 511
HinfI GANTC 5 cut(s) 68, 78, 142, 217, 507
HpaII CCGG 2 cut(s) 28, 118
HphI GGTGA 3 cut(s) 215, 482, 839
Hpy166II GTNNAC 3 cut(s) 301, 368, 511
Hpy188I TCNGA 1 cut(s) 922
Hpy188III TCNNGA 5 cut(s) 128, 146, 191, 419, 701
Hpy8I GTNNAC 3 cut(s) 301, 368, 511
Hpy99I CGWCG 1 cut(s) 54
HpyAV CCTTC 6 cut(s) 419, 539, 589, 799, 826, 862
HpyCH4III ACNGT 4 cut(s) 136, 305, 470, 707
HpyCH4IV ACGT 3 cut(s) 99, 331, 549
HpyCH4V TGCA 6 cut(s) 248, 311, 347, 450, 605, 776
HpyF10VI GCNNNNNNNGC 6 cut(s) 194, 203, 607, 611, 806, 843
HpyF3I CTNAG 3 cut(s) 738, 753, 801
HpySE526I ACGT 3 cut(s) 99, 331, 549
Hsp92I GRCGYC 1 cut(s) 837
Hsp92II CATG 1 cut(s) 704
HspAI GCGC 2 cut(s) 567, 837
KasI GGCGCC 1 cut(s) 836
Ksp22I TGATCA 1 cut(s) 697
Kzo9I GATC 4 cut(s) 148, 381, 697, 749
LguI GCTCTTC 1 cut(s) 754
LmnI GCTCC 7 cut(s) 193, 214, 270, 323, 461, 580, 598
Lsp1109I GCAGC 1 cut(s) 193
LweI GCATC 3 cut(s) 235, 320, 785
MaeI CTAG 5 cut(s) 183, 371, 419, 483, 570
MaeII ACGT 3 cut(s) 99, 331, 549
MaeIII GTNAC 2 cut(s) 470, 707
MalI GATC 4 cut(s) 150, 383, 699, 751
MboI GATC 4 cut(s) 148, 381, 697, 749
MboII GAAGA 4 cut(s) 151, 728, 771, 923
MflI RGATCY 3 cut(s) 148, 381, 749
MhlI GDGCHC 5 cut(s) 164, 190, 494, 577, 766
MluCI AATT 1 cut(s) 453
Mly113I GGCGCC 1 cut(s) 837
MlyI GAGTC 2 cut(s) 211, 516
MnlI CCTC 9 cut(s) 122, 181, 231, 543, 646, 685, 781, 891, 940
Mph1103I ATGCAT 1 cut(s) 250
MseI TTAA 3 cut(s) 230, 621, 660
MslI CAYNNNNRTG 1 cut(s) 705
MspA1I CMGCKG 1 cut(s) 95
MspCI CTTAAG 1 cut(s) 659
MspI CCGG 2 cut(s) 28, 118
MspR9I CCNGG 9 cut(s) 29, 35, 118, 119, 203, 360, 537, 579, 747
Mva1269I GAATGC 1 cut(s) 349
MvaI CCWGG 6 cut(s) 35, 203, 360, 537, 579, 747
MvnI CGCG 1 cut(s) 564
MwoI GCNNNNNNNGC 6 cut(s) 194, 203, 607, 611, 806, 843
NarI GGCGCC 1 cut(s) 837
NciI CCSGG 3 cut(s) 29, 118, 119
NdeII GATC 4 cut(s) 148, 381, 697, 749
NlaIII CATG 1 cut(s) 704
NlaIV GGNNCC 6 cut(s) 32, 189, 406, 491, 600, 838
NmuCI GTSAC 2 cut(s) 470, 707
NsiI ATGCAT 1 cut(s) 250
PagI TCATGA 1 cut(s) 700
PciSI GCTCTTC 1 cut(s) 754
PcsI WCGNNNNNNNCGW 1 cut(s) 502
PctI GAATGC 1 cut(s) 349
PfeI GAWTC 3 cut(s) 68, 78, 142
Pfl23II CGTACG 1 cut(s) 465
PfoI TCCNGGA 2 cut(s) 27, 577
PkrI GCNGC 3 cut(s) 110, 208, 566
PleI GAGTC 2 cut(s) 211, 515
PluTI GGCGCC 1 cut(s) 840
PpsI GAGTC 2 cut(s) 211, 515
Ppu21I YACGTR 1 cut(s) 550
PpuMI RGGWCCY 1 cut(s) 31
Psp5II RGGWCCY 1 cut(s) 31
Psp6I CCWGG 6 cut(s) 33, 201, 358, 535, 577, 745
PspEI GGTNACC 1 cut(s) 470
PspGI CCWGG 6 cut(s) 33, 201, 358, 535, 577, 745
PspLI CGTACG 1 cut(s) 465
PspN4I GGNNCC 6 cut(s) 32, 189, 406, 491, 600, 838
PspPI GGNCC 3 cut(s) 31, 356, 526
PspPPI RGGWCCY 1 cut(s) 31
PstNI CAGNNNCTG 1 cut(s) 797
PsuI RGATCY 3 cut(s) 148, 381, 749
PvuII CAGCTG 1 cut(s) 95
RsaI GTAC 4 cut(s) 292, 300, 467, 657
RsaNI GTAC 4 cut(s) 291, 299, 466, 656
RseI CAYNNNNRTG 1 cut(s) 705
SalI GTCGAC 1 cut(s) 509
SapI GCTCTTC 1 cut(s) 754
SaqAI TTAA 3 cut(s) 230, 621, 660
SatI GCNGC 3 cut(s) 109, 207, 565
Sau3AI GATC 4 cut(s) 148, 381, 697, 749
Sau96I GGNCC 3 cut(s) 31, 356, 526
SchI GAGTC 2 cut(s) 211, 516
ScrFI CCNGG 9 cut(s) 29, 35, 118, 119, 203, 360, 537, 579, 747
SduI GDGCHC 5 cut(s) 164, 190, 494, 577, 766
SfaNI GCATC 3 cut(s) 235, 320, 785
SfcI CTRYAG 1 cut(s) 861
SfoI GGCGCC 1 cut(s) 838
SinI GGWCC 2 cut(s) 31, 526
SmaI CCCGGG 1 cut(s) 119
SmiMI CAYNNNNRTG 1 cut(s) 705
SmlI CTYRAG 1 cut(s) 659
SmoI CTYRAG 1 cut(s) 659
SpeI ACTAGT 1 cut(s) 370
Sse9I AATT 1 cut(s) 453
SsiI CCGC 5 cut(s) 19, 106, 109, 158, 564
SspDI GGCGCC 1 cut(s) 836
SspMI CTAG 5 cut(s) 183, 371, 419, 483, 570
StyD4I CCNGG 9 cut(s) 27, 33, 116, 117, 201, 358, 535, 577, 745
StyI CCWWGG 1 cut(s) 182
TaaI ACNGT 4 cut(s) 136, 305, 470, 707
TaiI ACGT 3 cut(s) 102, 334, 552
TaqI TCGA 2 cut(s) 505, 510
TasI AATT 1 cut(s) 453
TatI WGTACW 1 cut(s) 290
TauI GCSGC 2 cut(s) 111, 567
TfiI GAWTC 3 cut(s) 68, 78, 142
Tru1I TTAA 3 cut(s) 230, 621, 660
Tru9I TTAA 3 cut(s) 230, 621, 660
TscAI CASTG 2 cut(s) 482, 712
TseFI GTSAC 2 cut(s) 470, 707
TseI GCWGC 1 cut(s) 206
Tsp45I GTSAC 2 cut(s) 470, 707
TspDTI ATGAA 3 cut(s) 438, 729, 738
TspGWI ACGGA 3 cut(s) 71, 384, 897
TspMI CCCGGG 1 cut(s) 117
TspRI CASTG 2 cut(s) 482, 712
Vha464I CTTAAG 1 cut(s) 659
VpaK11BI GGWCC 2 cut(s) 31, 526
XagI CCTNNNNNAGG 1 cut(s) 181
XbaI TCTAGA 1 cut(s) 418
XmaI CCCGGG 1 cut(s) 117
XmaJI CCTAGG 1 cut(s) 182
XmiI GTMKAC 1 cut(s) 510
XspI CTAG 5 cut(s) 183, 371, 419, 483, 570
Zsp2I ATGCAT 1 cut(s) 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.