FvH4_6g49020

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000181
Physical Location & Seq
Forward (+)
36809115 .. 36810953
1839 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g49020.t1

Sequence Viewer

Length: 702 bp
ATGGATCTGATGCGCTACCAACCTGCTATCGGCGGCTCCGCCCGGGCTACTCCGGCCGAGGCCGGCTGCGGGAGCTGGAAGCAGGGAGACGGATGTCATGACATCAAACATGATTCCTCTAAGAAACGAGCGCTTTCGGGAGAAGAACTCAAACAGTTTCTCTATGATTCCTCTAGGAAATCCGAGATTTCGGAACGAGAGTTACAAGAGATATTTGTGAAGATCGTCAAGGGTGCCGATCCTAACCATAAATTGTCTGAAAGTGAAGCCGAATCCACAAGGAATCTGTTAGATGGGTGGAGAGTTAGAGGAGAGTTGTTTATGTTGCCGCACGAGGAATTCGTAAAGAGGGTGTTTATATCTGATGAGGAATTTGAAAAGATATGCAAGGAAGCCGAGGCAGCTAGGAAACTGGAGATAGCTGAACGTAAGCCTGATGAAAAGCCTAAATATTGTGAAGTTTGTATGAAGGTCGGGTACCACATGTCATTTCGGTGTCCTTACTTGGAAGATATTCCAAACCCCGACACCGCAGTTGTTGGCGAGGGCTATGAAATAATTTGCCATTGCTGCCTTGAGTCGGATCATGGCCACCCCAAGGGAAGCTGGGCAGGATTTGCATGGAATAAGAGTTGTGATTGGTTTGAAAAGCTGATGCCCCGTGATCAAGAAGACTCAGATTCAGAATCAGATGAAGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

234

Amino Acids

26.62

Weight (kDa)

5.05

Isoelectric Point (pI)

48.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000181)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 31
Acc65I GGTACC 1 cut(s) 477
AccB1I GGYRCC 2 cut(s) 233, 477
AciI CCGC 5 cut(s) 33, 39, 69, 329, 531
AclWI GGATC 3 cut(s) 12, 233, 591
AcoI YGGCCR 2 cut(s) 54, 589
AcsI RAATTY 2 cut(s) 338, 371
AfaI GTAC 1 cut(s) 479
AfeI AGCGCT 1 cut(s) 132
AfiI CCNNNNNNNGG 4 cut(s) 29, 69, 580, 598
AflIII ACRYGT 1 cut(s) 483
AgsI TTSAA 2 cut(s) 377, 647
AluBI AGCT 5 cut(s) 75, 404, 422, 606, 652
AluI AGCT 5 cut(s) 75, 404, 422, 606, 652
Alw26I GTCTC 1 cut(s) 81
AlwI GGATC 3 cut(s) 12, 233, 591
Ama87I CYCGRG 1 cut(s) 42
Aor51HI AGCGCT 1 cut(s) 132
AoxI GGCC 3 cut(s) 54, 60, 589
ApeKI GCWGC 3 cut(s) 66, 401, 570
ApoI RAATTY 2 cut(s) 338, 371
Asp700I GAANNNNTTC 1 cut(s) 513
Asp718I GGTACC 1 cut(s) 477
AspLEI GCGC 2 cut(s) 15, 133
AsuC2I CCSGG 2 cut(s) 43, 44
AvaI CYCGRG 1 cut(s) 42
BalI TGGCCA 1 cut(s) 591
BanI GGYRCC 2 cut(s) 233, 477
BarI GAAGNNNNNNTAC 2 cut(s) 461, 493
BauI CACGAG 1 cut(s) 332
BbsI GAAGAC 1 cut(s) 678
BbvI GCAGC 3 cut(s) 53, 413, 557
BccI CCATC 1 cut(s) 287
BclI TGATCA 1 cut(s) 664
BcnI CCSGG 2 cut(s) 43, 44
BcoDI GTCTC 1 cut(s) 81
BfaI CTAG 3 cut(s) 174, 405, 700
BfoI RGCGCY 1 cut(s) 134
BfuAI ACCTGC 1 cut(s) 31
BisI GCNGC 5 cut(s) 34, 67, 329, 402, 571
BlsI GCNGC 5 cut(s) 35, 68, 330, 403, 572
Bme1390I CCNGG 2 cut(s) 43, 44
BmeT110I CYCGRG 1 cut(s) 42
BmiI GGNNCC 3 cut(s) 37, 235, 479
BmrFI CCNGG 2 cut(s) 43, 44
BmsI GCATC 1 cut(s) 645
BoxI GACNNNNGTC 1 cut(s) 93
BpiI GAAGAC 1 cut(s) 678
BplI GAGNNNNNCTC 2 cut(s) 132, 164
BpmI CTGGAG 1 cut(s) 434
BpuEI CTTGAG 1 cut(s) 596
BpuMI CCSGG 2 cut(s) 43, 44
BsaJI CCNNGG 4 cut(s) 42, 57, 396, 597
Bsc4I CCNNNNNNNGG 4 cut(s) 29, 69, 580, 598
Bse118I RCCGGY 1 cut(s) 62
Bse1I ACTGG 1 cut(s) 417
Bse3DI GCAATG 1 cut(s) 565
BseDI CCNNGG 4 cut(s) 42, 57, 396, 597
BseGI GGATG 1 cut(s) 98
BseLI CCNNNNNNNGG 4 cut(s) 29, 69, 580, 598
BseMI GCAATG 1 cut(s) 565
BseMII CTCAG 1 cut(s) 690
BseNI ACTGG 1 cut(s) 417
BseRI GAGGAG 1 cut(s) 324
BseX3I CGGCCG 1 cut(s) 54
BseXI GCAGC 3 cut(s) 53, 413, 557
BseYI CCCAGC 1 cut(s) 606
Bsh1285I CGRYCG 1 cut(s) 57
BshFI GGCC 3 cut(s) 56, 62, 591
BshNI GGYRCC 2 cut(s) 233, 477
BsiEI CGRYCG 1 cut(s) 57
BsiHKCI CYCGRG 1 cut(s) 42
BsiSI CCGG 3 cut(s) 43, 53, 63
BslI CCNNNNNNNGG 4 cut(s) 29, 69, 580, 598
BsmAI GTCTC 1 cut(s) 81
BsmBI CGTCTC 1 cut(s) 81
BsnI GGCC 3 cut(s) 56, 62, 591
BsoBI CYCGRG 1 cut(s) 42
Bsp143I GATC 5 cut(s) 4, 222, 238, 583, 664
BspACI CCGC 5 cut(s) 33, 39, 69, 329, 531
BspANI GGCC 3 cut(s) 56, 62, 591
BspCNI CTCAG 1 cut(s) 689
BspHI TCATGA 1 cut(s) 97
BspLI GGNNCC 3 cut(s) 37, 235, 479
BspMI ACCTGC 1 cut(s) 31
BspPI GGATC 3 cut(s) 12, 233, 591
BspT107I GGYRCC 2 cut(s) 233, 477
BsrDI GCAATG 1 cut(s) 565
BsrFI RCCGGY 1 cut(s) 62
BsrI ACTGG 1 cut(s) 417
BssAI RCCGGY 1 cut(s) 62
BssECI CCNNGG 4 cut(s) 42, 57, 396, 597
BssMI GATC 5 cut(s) 4, 222, 238, 583, 664
BssSI CACGAG 1 cut(s) 332
BssT1I CCWWGG 1 cut(s) 597
Bst2BI CACGAG 1 cut(s) 332
Bst4CI ACNGT 1 cut(s) 156
BstAPI GCANNNNNTGC 1 cut(s) 617
BstC8I GCNNGC 1 cut(s) 64
BstDEI CTNAG 2 cut(s) 120, 676
BstF5I GGATG 1 cut(s) 98
BstH2I RGCGCY 1 cut(s) 134
BstHHI GCGC 2 cut(s) 15, 133
BstKTI GATC 5 cut(s) 7, 225, 241, 586, 667
BstMAI GTCTC 1 cut(s) 81
BstMBI GATC 5 cut(s) 4, 222, 238, 583, 664
BstMCI CGRYCG 1 cut(s) 57
BstMWI GCNNNNNNNGC 5 cut(s) 53, 72, 401, 570, 617
BstNSI RCATGY 1 cut(s) 487
BstPAI GACNNNNGTC 1 cut(s) 93
BstSCI CCNGG 2 cut(s) 41, 42
BstV1I GCAGC 3 cut(s) 53, 413, 557
BstV2I GAAGAC 1 cut(s) 678
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BstZI CGGCCG 1 cut(s) 54
BsuRI GGCC 3 cut(s) 56, 62, 591
BtsCI GGATG 1 cut(s) 98
BveI ACCTGC 1 cut(s) 31
Cac8I GCNNGC 1 cut(s) 64
CciI TCATGA 1 cut(s) 97
CfoI GCGC 2 cut(s) 15, 133
Cfr10I RCCGGY 1 cut(s) 62
Cfr9I CCCGGG 1 cut(s) 42
Csp6I GTAC 1 cut(s) 478
CviAII CATG 5 cut(s) 98, 110, 484, 587, 621
CviQI GTAC 1 cut(s) 478
DdeI CTNAG 2 cut(s) 120, 676
DpnI GATC 5 cut(s) 6, 224, 240, 585, 666
DpnII GATC 5 cut(s) 4, 222, 238, 583, 664
EaeI YGGCCR 2 cut(s) 54, 589
EagI CGGCCG 1 cut(s) 54
EciI GGCGGA 1 cut(s) 28
EclXI CGGCCG 1 cut(s) 54
Eco130I CCWWGG 1 cut(s) 597
Eco47III AGCGCT 1 cut(s) 132
Eco52I CGGCCG 1 cut(s) 54
Eco88I CYCGRG 1 cut(s) 42
EcoRI GAATTC 1 cut(s) 338
EcoT14I CCWWGG 1 cut(s) 597
ErhI CCWWGG 1 cut(s) 597
Esp3I CGTCTC 1 cut(s) 81
FaeI CATG 5 cut(s) 101, 113, 487, 590, 624
FatI CATG 5 cut(s) 97, 109, 483, 586, 620
FauI CCCGC 1 cut(s) 62
FbaI TGATCA 1 cut(s) 664
Fnu4HI GCNGC 5 cut(s) 34, 67, 329, 402, 571
FokI GGATG 1 cut(s) 105
Fsp4HI GCNGC 5 cut(s) 34, 67, 329, 402, 571
FspBI CTAG 3 cut(s) 174, 405, 700
GlaI GCGC 2 cut(s) 14, 132
GluI GCNGC 5 cut(s) 34, 67, 329, 402, 571
GsaI CCCAGC 1 cut(s) 610
GsuI CTGGAG 1 cut(s) 434
HaeII RGCGCY 1 cut(s) 134
HaeIII GGCC 3 cut(s) 56, 62, 591
HapII CCGG 3 cut(s) 43, 53, 63
HhaI GCGC 2 cut(s) 15, 133
Hin1II CATG 5 cut(s) 101, 113, 487, 590, 624
Hin6I GCGC 2 cut(s) 13, 131
HinP1I GCGC 2 cut(s) 13, 131
HinfI GANTC 8 cut(s) 113, 167, 272, 283, 578, 674, 680, 686
HpaII CCGG 3 cut(s) 43, 53, 63
Hpy188I TCNGA 9 cut(s) 9, 184, 193, 259, 364, 583, 679, 685, 691
Hpy188III TCNNGA 3 cut(s) 98, 138, 668
HpyAV CCTTC 1 cut(s) 463
HpyCH4III ACNGT 1 cut(s) 156
HpyCH4IV ACGT 1 cut(s) 427
HpyCH4V TGCA 2 cut(s) 387, 620
HpyF10VI GCNNNNNNNGC 5 cut(s) 53, 72, 401, 570, 617
HpyF3I CTNAG 2 cut(s) 120, 676
HpySE526I ACGT 1 cut(s) 427
Hsp92II CATG 5 cut(s) 101, 113, 487, 590, 624
HspAI GCGC 2 cut(s) 13, 131
KpnI GGTACC 1 cut(s) 481
KroI GCCGGC 1 cut(s) 62
KroNI GCCGGC 1 cut(s) 64
Ksp22I TGATCA 1 cut(s) 664
Kzo9I GATC 5 cut(s) 4, 222, 238, 583, 664
LmnI GCTCC 2 cut(s) 41, 72
Lsp1109I GCAGC 3 cut(s) 53, 413, 557
LweI GCATC 1 cut(s) 645
MaeI CTAG 3 cut(s) 174, 405, 700
MaeII ACGT 1 cut(s) 427
MaeIII GTNAC 1 cut(s) 201
MalI GATC 5 cut(s) 6, 224, 240, 585, 666
MboI GATC 5 cut(s) 4, 222, 238, 583, 664
MboII GAAGA 4 cut(s) 155, 232, 521, 683
MflI RGATCY 1 cut(s) 4
MlsI TGGCCA 1 cut(s) 591
MluCI AATT 4 cut(s) 251, 338, 371, 558
MluNI TGGCCA 1 cut(s) 591
MlyI GAGTC 2 cut(s) 587, 668
MmeI TCCRAC 1 cut(s) 561
MnlI CCTC 9 cut(s) 52, 127, 181, 302, 328, 342, 361, 391, 538
Mox20I TGGCCA 1 cut(s) 591
MroNI GCCGGC 1 cut(s) 62
MroXI GAANNNNTTC 1 cut(s) 513
MscI TGGCCA 1 cut(s) 591
MslI CAYNNNNRTG 1 cut(s) 493
Msp20I TGGCCA 1 cut(s) 591
MspI CCGG 3 cut(s) 43, 53, 63
MspR9I CCNGG 2 cut(s) 43, 44
MwoI GCNNNNNNNGC 5 cut(s) 53, 72, 401, 570, 617
NaeI GCCGGC 1 cut(s) 64
NciI CCSGG 2 cut(s) 43, 44
NdeII GATC 5 cut(s) 4, 222, 238, 583, 664
NgoMIV GCCGGC 1 cut(s) 62
NlaIII CATG 5 cut(s) 101, 113, 487, 590, 624
NlaIV GGNNCC 3 cut(s) 37, 235, 479
NmeAIII GCCGAG 2 cut(s) 82, 421
NspI RCATGY 1 cut(s) 487
PagI TCATGA 1 cut(s) 97
PciI ACATGT 1 cut(s) 483
PcsI WCGNNNNNNNCGW 1 cut(s) 339
PdiI GCCGGC 1 cut(s) 64
PdmI GAANNNNTTC 1 cut(s) 513
PfeI GAWTC 6 cut(s) 113, 167, 272, 283, 680, 686
PkrI GCNGC 5 cut(s) 35, 68, 330, 403, 572
PleI GAGTC 2 cut(s) 586, 668
PpsI GAGTC 2 cut(s) 586, 668
PscI ACATGT 1 cut(s) 483
PshAI GACNNNNGTC 1 cut(s) 93
PspFI CCCAGC 1 cut(s) 606
PspN4I GGNNCC 3 cut(s) 37, 235, 479
PsrI GAACNNNNNNTAC 2 cut(s) 186, 218
PsuI RGATCY 1 cut(s) 4
RsaI GTAC 1 cut(s) 479
RsaNI GTAC 1 cut(s) 478
RseI CAYNNNNRTG 1 cut(s) 493
SatI GCNGC 5 cut(s) 34, 67, 329, 402, 571
Sau3AI GATC 5 cut(s) 4, 222, 238, 583, 664
SchI GAGTC 2 cut(s) 587, 668
ScrFI CCNGG 2 cut(s) 43, 44
SetI ASST 8 cut(s) 25, 77, 406, 424, 430, 474, 608, 654
SfaNI GCATC 1 cut(s) 645
SmaI CCCGGG 1 cut(s) 44
SmiMI CAYNNNNRTG 1 cut(s) 493
SmlI CTYRAG 1 cut(s) 575
SmoI CTYRAG 1 cut(s) 575
SrfI GCCCGGGC 1 cut(s) 44
Sse9I AATT 4 cut(s) 251, 338, 371, 558
SsiI CCGC 5 cut(s) 33, 39, 69, 329, 531
SspI AATATT 1 cut(s) 452
SspMI CTAG 3 cut(s) 174, 405, 700
StyD4I CCNGG 2 cut(s) 41, 42
StyI CCWWGG 1 cut(s) 597
TaaI ACNGT 1 cut(s) 156
TaiI ACGT 1 cut(s) 430
TasI AATT 4 cut(s) 251, 338, 371, 558
TauI GCSGC 2 cut(s) 36, 331
TfiI GAWTC 6 cut(s) 113, 167, 272, 283, 680, 686
TseI GCWGC 3 cut(s) 66, 401, 570
TspDTI ATGAA 3 cut(s) 453, 482, 567
TspGWI ACGGA 1 cut(s) 105
TspMI CCCGGG 1 cut(s) 42
XapI RAATTY 2 cut(s) 338, 371
XceI RCATGY 1 cut(s) 487
XmaI CCCGGG 1 cut(s) 42
XmnI GAANNNNTTC 1 cut(s) 513
XspI CTAG 3 cut(s) 174, 405, 700
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.