Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0000181

Physical Location & Seq

Genomic Coordinates Reverse (-)

18416265 .. 18425024

Gene Structure 8760 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG087500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGTTAAGGAACCTACTATTCAACTTCAAGCAAGAGAAACTTCTGGAGAACGACATACACTTGCGTTCAGATTGTTTAAGATTGGTCCAGCGGAAACAGCCCGGATCACCAAAGATAAAGGAGATGTGTCTTTGTCGGACGAGGTAAAAAACAGTTTGGTGGAAAAGTTAGGAAACTCTTTTTGGGCATTCGTAGAAGATGATTCGTTGGAAGATGAAGTAGAGGATTTGTTGGTATGTGAAGAAAAGGCTTTGTTAATACATGAAGAAAAGGCTGTGTTGGACGAGCTAGCCAAGGCAAATTTGGAAGAGGAAGAAAAGGCTTCTGCATGTGCTTTCTTTGGAAGGTGTAAGGCTAGTAATTTGGAGGTTAAGCAGGTTTCAGGGACACAGCTGTTGTACAGGATTTGCGGATCGGGACGGTCTAGTGGGTCTGCTGGGTTTGAAGAGAAAAGGGACTCTGCTTTTGACAAATTACAGAGTGGGATCAAGAATGGTAGTGTTTTTTTCTGTACTGGGAGCTATGAGTCGGTTTATAAATTGGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0006810 GO:0008150 GO:0009505 GO:0009506 GO:0009987 GO:0010496 GO:0010497 GO:0016020 GO:0016032 GO:0030054 GO:0030312 GO:0040011 GO:0044000 GO:0044403 GO:0044419 GO:0044464 GO:0044766 GO:0046739 GO:0046794 GO:0051179 GO:0051234 GO:0051701 GO:0051704 GO:0051814 GO:0052126 GO:0052192 GO:0055044 GO:0071944 GO:1902579

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Stress-antifung

Protein Analysis

182

Amino Acids

20.07

Weight (kDa)

4.91

Isoelectric Point (pI)

36.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000181)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica	MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica	Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis	pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis	RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata	RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora	Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa	Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha	Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana	Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	537
Acc36I	ACCTGC	1 cut(s)	367
AciI	CCGC	2 cut(s)	92, 411
AclWI	GGATC	3 cut(s)	113, 421, 494
AcsI	RAATTY	1 cut(s)	301
AfaI	GTAC	2 cut(s)	401, 514
AgsI	TTSAA	3 cut(s)	23, 29, 446
AjuI	GAANNNNNNNTTGG	2 cut(s)	166, 198
AluBI	AGCT	3 cut(s)	289, 394, 522
AluI	AGCT	3 cut(s)	289, 394, 522
AlwI	GGATC	3 cut(s)	113, 421, 494
ApoI	RAATTY	1 cut(s)	301
ArsI	GACNNNNNNTTYG	2 cut(s)	449, 481
AspS9I	GGNCC	1 cut(s)	86
AsuC2I	CCSGG	1 cut(s)	103
AsuHPI	GGTGA	1 cut(s)	100
AsuNHI	GCTAGC	1 cut(s)	289
AvaII	GGWCC	1 cut(s)	86
BcnI	CCSGG	1 cut(s)	103
BfaI	CTAG	4 cut(s)	290, 357, 426, 547
BfuAI	ACCTGC	1 cut(s)	367
Bme1390I	CCNGG	1 cut(s)	103
Bme18I	GGWCC	1 cut(s)	86
BmgT120I	GGNCC	1 cut(s)	86
BmiI	GGNNCC	1 cut(s)	12
BmrFI	CCNGG	1 cut(s)	103
BmrI	ACTGGG	1 cut(s)	525
BmtI	GCTAGC	1 cut(s)	293
BmuI	ACTGGG	1 cut(s)	525
BpmI	CTGGAG	1 cut(s)	66
BpuMI	CCSGG	1 cut(s)	103
BsaJI	CCNNGG	1 cut(s)	294
Bse1I	ACTGG	1 cut(s)	520
BseDI	CCNNGG	1 cut(s)	294
BseNI	ACTGG	1 cut(s)	520
BseYI	CCCAGC	1 cut(s)	437
BsiSI	CCGG	1 cut(s)	103
BslFI	GGGAC	3 cut(s)	400, 432, 470
BsmFI	GGGAC	3 cut(s)	400, 432, 470
BsmI	GAATGC	1 cut(s)	188
Bsp1407I	TGTACA	1 cut(s)	399
Bsp143I	GATC	3 cut(s)	105, 413, 486
BspACI	CCGC	2 cut(s)	92, 411
BspLI	GGNNCC	1 cut(s)	12
BspMI	ACCTGC	1 cut(s)	367
BspOI	GCTAGC	1 cut(s)	293
BspPI	GGATC	3 cut(s)	113, 421, 494
BsrGI	TGTACA	1 cut(s)	399
BsrI	ACTGG	1 cut(s)	520
BssECI	CCNNGG	1 cut(s)	294
BssMI	GATC	3 cut(s)	105, 413, 486
BssT1I	CCWWGG	1 cut(s)	294
Bst4CI	ACNGT	2 cut(s)	155, 423
Bst6I	CTCTTC	2 cut(s)	303, 441
BstAUI	TGTACA	1 cut(s)	399
BstC8I	GCNNGC	1 cut(s)	291
BstKTI	GATC	3 cut(s)	108, 416, 489
BstMBI	GATC	3 cut(s)	105, 413, 486
BstMWI	GCNNNNNNNGC	1 cut(s)	98
BstNSI	RCATGY	1 cut(s)	333
BstSCI	CCNGG	1 cut(s)	101
BveI	ACCTGC	1 cut(s)	367
Cac8I	GCNNGC	1 cut(s)	291
Cfr13I	GGNCC	1 cut(s)	86
Csp6I	GTAC	2 cut(s)	400, 513
CviAII	CATG	2 cut(s)	263, 330
CviQI	GTAC	2 cut(s)	400, 513
DpnI	GATC	3 cut(s)	107, 415, 488
DpnII	GATC	3 cut(s)	105, 413, 486
Eam1104I	CTCTTC	2 cut(s)	303, 441
EarI	CTCTTC	2 cut(s)	303, 441
Eco130I	CCWWGG	1 cut(s)	294
Eco47I	GGWCC	1 cut(s)	86
EcoT14I	CCWWGG	1 cut(s)	294
ErhI	CCWWGG	1 cut(s)	294
FaeI	CATG	2 cut(s)	266, 333
FaiI	YATR	6 cut(s)	57, 238, 264, 331, 525, 537
FalI	AAGNNNNNCTT	2 cut(s)	25, 57
FaqI	GGGAC	3 cut(s)	400, 432, 470
FatI	CATG	2 cut(s)	262, 329
FspBI	CTAG	4 cut(s)	290, 357, 426, 547
GsaI	CCCAGC	1 cut(s)	441
GsuI	CTGGAG	1 cut(s)	66
HapII	CCGG	1 cut(s)	103
Hin1II	CATG	2 cut(s)	266, 333
HinfI	GANTC	3 cut(s)	203, 458, 527
HpaII	CCGG	1 cut(s)	103
HphI	GGTGA	1 cut(s)	100
Hpy188I	TCNGA	2 cut(s)	71, 139
Hpy188III	TCNNGA	3 cut(s)	45, 417, 490
HpyAV	CCTTC	1 cut(s)	339
HpyCH4III	ACNGT	2 cut(s)	155, 423
HpyCH4V	TGCA	1 cut(s)	329
HpyF10VI	GCNNNNNNNGC	1 cut(s)	98
Hsp92II	CATG	2 cut(s)	266, 333
Kzo9I	GATC	3 cut(s)	105, 413, 486
LmnI	GCTCC	1 cut(s)	519
LpnPI	CCDG	8 cut(s)	30, 102, 116, 362, 369, 388, 423, 501
MaeI	CTAG	4 cut(s)	290, 357, 426, 547
MalI	GATC	3 cut(s)	107, 415, 488
MboI	GATC	3 cut(s)	105, 413, 486
MboII	GAAGA	7 cut(s)	209, 224, 254, 278, 320, 326, 458
MluCI	AATT	4 cut(s)	301, 361, 473, 539
MlyI	GAGTC	2 cut(s)	452, 536
MmeI	TCCRAC	3 cut(s)	117, 189, 261
MnlI	CCTC	4 cut(s)	136, 217, 304, 361
MseI	TTAA	4 cut(s)	6, 78, 257, 372
MspA1I	CMGCKG	2 cut(s)	92, 394
MspI	CCGG	1 cut(s)	103
MspR9I	CCNGG	1 cut(s)	103
Mva1269I	GAATGC	1 cut(s)	188
MwoI	GCNNNNNNNGC	1 cut(s)	98
NciI	CCSGG	1 cut(s)	103
NdeII	GATC	3 cut(s)	105, 413, 486
NheI	GCTAGC	1 cut(s)	289
NlaIII	CATG	2 cut(s)	266, 333
NlaIV	GGNNCC	1 cut(s)	12
NspI	RCATGY	1 cut(s)	333
PctI	GAATGC	1 cut(s)	188
PfeI	GAWTC	1 cut(s)	203
PleI	GAGTC	2 cut(s)	452, 535
PpsI	GAGTC	2 cut(s)	452, 535
PsiI	TTATAA	1 cut(s)	537
PspFI	CCCAGC	1 cut(s)	437
PspN4I	GGNNCC	1 cut(s)	12
PspPI	GGNCC	1 cut(s)	86
PvuII	CAGCTG	1 cut(s)	394
RsaI	GTAC	2 cut(s)	401, 514
RsaNI	GTAC	2 cut(s)	400, 513
SaqAI	TTAA	4 cut(s)	6, 78, 257, 372
Sau3AI	GATC	3 cut(s)	105, 413, 486
Sau96I	GGNCC	1 cut(s)	86
SchI	GAGTC	2 cut(s)	452, 536
ScrFI	CCNGG	1 cut(s)	103
SetI	ASST	8 cut(s)	16, 147, 291, 350, 372, 381, 396, 524
SinI	GGWCC	1 cut(s)	86
Sse9I	AATT	4 cut(s)	301, 361, 473, 539
SsiI	CCGC	2 cut(s)	92, 411
SspMI	CTAG	4 cut(s)	290, 357, 426, 547
StyD4I	CCNGG	1 cut(s)	101
StyI	CCWWGG	1 cut(s)	294
TaaI	ACNGT	2 cut(s)	155, 423
TasI	AATT	4 cut(s)	301, 361, 473, 539
TatI	WGTACW	2 cut(s)	399, 512
TfiI	GAWTC	1 cut(s)	203
Tru1I	TTAA	4 cut(s)	6, 78, 257, 372
Tru9I	TTAA	4 cut(s)	6, 78, 257, 372
TspDTI	ATGAA	2 cut(s)	231, 279
VpaK11BI	GGWCC	1 cut(s)	86
XapI	RAATTY	1 cut(s)	301
XceI	RCATGY	1 cut(s)	333
XcmI	CCANNNNNNNNNTGG	1 cut(s)	301
XspI	CTAG	4 cut(s)	290, 357, 426, 547

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.