Rh5CG125200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000181
Physical Location & Seq
Forward (+)
10403963 .. 10410226
6264 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG125200.1

Sequence Viewer

Length: 792 bp
ATGATGCAACCTCAAACAGGTAGCAAGGGCGGCAATGCCACAAGACTCAAGTGGAGATACCCACCCATAGAAGCCATAAATGTAGGAGAACCAAGGATCGTCACTTCTCTTCAGAAGTGCCCCAATAGTCCTGATAGCAATGGCAGCAAGGCCAACAGAAGCAAGTCTCCAGTGTTTACTATGGATGGTGTCACTTCTCTCCACAAGTGCCCCAGTAATCCTGGTAGCAAGGGTGGCAAGGCCAAAAGACTCAAGTGGACACACCTTGTGCAGGATTACGAAGGCCCCAGTTCTCCTGGCACAAAGGTGGAAGAACCAAGGATTGTCACTCCTCTCCAGAAGCGCCCCAGTAATCCTGGTATCAAGGGCGGCGTGGCCAAAAAACTCAAGTGGTCACACAGTGCTTTGGATTATGAAGGCTCCAGTTCTCCTGGCACGAAGACGGAAGGACCAAATATTGGTACTTCTTCTCTCCACAAGCTCCGTAGTAATACTGGTAAGTGTTTGGTTTGTTCCTCTGTAGACGACCACCCTACATCTCTATGCCCGTACCTGGATTTTCTCCCAGATGATGCAATTGTCAGCAGTGGGTGTGACTTAGTTTGTAATTTTTGTAGCAAGTCAAATGGAATTTGCAAATGTTGGAAAGAGGAAGGACAGTGTTTTCTTCTCAAGTTTTGTCGATTTTGTTCAAAGAGTGGAGAGCACTGGGGTTATATGTGCCCACGCCTTGATCTTTGTTCTTCTCCTGTGGACTTTCCTGGTCAAACCTCAAGTGCACAGCTATGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

263

Amino Acids

28.45

Weight (kDa)

9.02

Isoelectric Point (pI)

43.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000181)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 458
AccI GTMKAC 1 cut(s) 522
AciI CCGC 2 cut(s) 30, 369
AclWI GGATC 1 cut(s) 104
AcoI YGGCCR 1 cut(s) 375
AcsI RAATTY 1 cut(s) 630
AcuI CTGAAG 1 cut(s) 95
AdeI CACNNNGTG 2 cut(s) 268, 401
AfaI GTAC 2 cut(s) 463, 551
AfiI CCNNNNNNNGG 4 cut(s) 17, 271, 458, 553
AgsI TTSAA 1 cut(s) 693
AjnI CCWGG 6 cut(s) 220, 295, 355, 430, 552, 760
AleI CACNNNNGTG 1 cut(s) 305
AluBI AGCT 2 cut(s) 481, 784
AluI AGCT 2 cut(s) 481, 784
Alw21I GWGCWC 2 cut(s) 708, 781
Alw26I GTCTC 1 cut(s) 171
Alw44I GTGCAC 1 cut(s) 777
AlwI GGATC 1 cut(s) 104
AoxI GGCC 4 cut(s) 150, 240, 283, 375
ApaLI GTGCAC 1 cut(s) 777
ApeKI GCWGC 1 cut(s) 144
ApoI RAATTY 1 cut(s) 630
AspLEI GCGC 1 cut(s) 345
AspS9I GGNCC 2 cut(s) 284, 449
AvaII GGWCC 1 cut(s) 449
BaeGI GKGCMC 4 cut(s) 122, 212, 725, 781
BalI TGGCCA 1 cut(s) 377
BbsI GAAGAC 1 cut(s) 446
Bbv12I GWGCWC 2 cut(s) 708, 781
BbvI GCAGC 1 cut(s) 156
BccI CCATC 1 cut(s) 179
BciT130I CCWGG 6 cut(s) 222, 297, 357, 432, 554, 762
BcoDI GTCTC 1 cut(s) 171
BfmI CTRYAG 1 cut(s) 519
BfoI RGCGCY 1 cut(s) 346
BisI GCNGC 3 cut(s) 31, 145, 370
BlsI GCNGC 3 cut(s) 32, 146, 371
Bme1390I CCNGG 6 cut(s) 222, 297, 357, 432, 554, 762
Bme18I GGWCC 1 cut(s) 449
BmgT120I GGNCC 2 cut(s) 284, 449
BmiI GGNNCC 2 cut(s) 286, 421
BmrFI CCNGG 6 cut(s) 222, 297, 357, 432, 554, 762
BmrI ACTGGG 4 cut(s) 207, 282, 342, 718
BmsI GCATC 1 cut(s) 562
BmuI ACTGGG 4 cut(s) 207, 282, 342, 718
BpiI GAAGAC 1 cut(s) 446
BpmI CTGGAG 3 cut(s) 153, 320, 406
BpuEI CTTGAG 5 cut(s) 32, 236, 371, 656, 757
BsaJI CCNNGG 2 cut(s) 92, 317
Bsc4I CCNNNNNNNGG 4 cut(s) 17, 271, 458, 553
Bse1I ACTGG 7 cut(s) 170, 213, 288, 348, 423, 499, 713
Bse3DI GCAATG 2 cut(s) 40, 145
BseBI CCWGG 6 cut(s) 222, 297, 357, 432, 554, 762
BseDI CCNNGG 2 cut(s) 92, 317
BseGI GGATG 1 cut(s) 190
BseLI CCNNNNNNNGG 4 cut(s) 17, 271, 458, 553
BseMI GCAATG 2 cut(s) 40, 145
BseNI ACTGG 7 cut(s) 170, 213, 288, 348, 423, 499, 713
BseRI GAGGAG 1 cut(s) 321
BseSI GKGCMC 4 cut(s) 122, 212, 725, 781
BseXI GCAGC 1 cut(s) 156
BsgI GTGCAG 1 cut(s) 290
BshFI GGCC 4 cut(s) 152, 242, 285, 377
BsiHKAI GWGCWC 2 cut(s) 708, 781
BslI CCNNNNNNNGG 4 cut(s) 17, 271, 458, 553
BsmAI GTCTC 1 cut(s) 171
BsnI GGCC 4 cut(s) 152, 242, 285, 377
Bsp1286I GDGCHC 5 cut(s) 122, 212, 708, 725, 781
Bsp143I GATC 2 cut(s) 96, 733
BspACI CCGC 2 cut(s) 30, 369
BspANI GGCC 4 cut(s) 152, 242, 285, 377
BspLI GGNNCC 2 cut(s) 286, 421
BspPI GGATC 1 cut(s) 104
BsrDI GCAATG 2 cut(s) 40, 145
BsrI ACTGG 7 cut(s) 170, 213, 288, 348, 423, 499, 713
BssECI CCNNGG 2 cut(s) 92, 317
BssMI GATC 2 cut(s) 96, 733
BssT1I CCWWGG 2 cut(s) 92, 317
Bst2UI CCWGG 6 cut(s) 222, 297, 357, 432, 554, 762
Bst4CI ACNGT 2 cut(s) 401, 660
Bst6I CTCTTC 1 cut(s) 114
BstDEI CTNAG 1 cut(s) 598
BstENI CCTNNNNNAGG 2 cut(s) 15, 269
BstF5I GGATG 1 cut(s) 190
BstH2I RGCGCY 1 cut(s) 346
BstHHI GCGC 1 cut(s) 345
BstKTI GATC 2 cut(s) 99, 736
BstMAI GTCTC 1 cut(s) 171
BstMBI GATC 2 cut(s) 96, 733
BstMWI GCNNNNNNNGC 3 cut(s) 30, 144, 234
BstNI CCWGG 6 cut(s) 222, 297, 357, 432, 554, 762
BstSCI CCNGG 6 cut(s) 220, 295, 355, 430, 552, 760
BstSFI CTRYAG 1 cut(s) 519
BstSLI GKGCMC 4 cut(s) 122, 212, 725, 781
BstV1I GCAGC 1 cut(s) 156
BstV2I GAAGAC 1 cut(s) 446
BsuRI GGCC 4 cut(s) 152, 242, 285, 377
BtsCI GGATG 1 cut(s) 190
BtsI GCAGTG 1 cut(s) 592
BtsIMutI CAGTG 5 cut(s) 177, 406, 592, 665, 706
CfoI GCGC 1 cut(s) 345
Cfr13I GGNCC 2 cut(s) 284, 449
Csp6I GTAC 2 cut(s) 462, 550
CviJI RGCY 8 cut(s) 74, 152, 242, 285, 377, 420, 481, 784
CviKI_1 RGCY 8 cut(s) 74, 152, 242, 285, 377, 420, 481, 784
CviQI GTAC 2 cut(s) 462, 550
DdeI CTNAG 1 cut(s) 598
DpnI GATC 2 cut(s) 98, 735
DpnII GATC 2 cut(s) 96, 733
DraIII CACNNNGTG 2 cut(s) 268, 401
EaeI YGGCCR 1 cut(s) 375
Eam1104I CTCTTC 1 cut(s) 114
EarI CTCTTC 1 cut(s) 114
Eco130I CCWWGG 2 cut(s) 92, 317
Eco47I GGWCC 1 cut(s) 449
Eco57I CTGAAG 1 cut(s) 95
EcoNI CCTNNNNNAGG 2 cut(s) 15, 269
EcoO109I RGGNCCY 1 cut(s) 284
EcoRII CCWGG 6 cut(s) 220, 295, 355, 430, 552, 760
EcoT14I CCWWGG 2 cut(s) 92, 317
ErhI CCWWGG 2 cut(s) 92, 317
FaiI YATR 8 cut(s) 68, 77, 182, 414, 544, 717, 719, 787
FblI GTMKAC 1 cut(s) 522
Fnu4HI GCNGC 3 cut(s) 31, 145, 370
FokI GGATG 1 cut(s) 197
Fsp4HI GCNGC 3 cut(s) 31, 145, 370
GlaI GCGC 1 cut(s) 344
GluI GCNGC 3 cut(s) 31, 145, 370
GsuI CTGGAG 3 cut(s) 153, 320, 406
HaeII RGCGCY 1 cut(s) 346
HaeIII GGCC 4 cut(s) 152, 242, 285, 377
HhaI GCGC 1 cut(s) 345
Hin6I GCGC 1 cut(s) 343
HinP1I GCGC 1 cut(s) 343
HinfI GANTC 2 cut(s) 45, 249
Hpy166II GTNNAC 5 cut(s) 177, 258, 523, 754, 779
Hpy188I TCNGA 1 cut(s) 114
Hpy188III TCNNGA 2 cut(s) 131, 337
Hpy8I GTNNAC 5 cut(s) 177, 258, 523, 754, 779
HpyAV CCTTC 4 cut(s) 275, 410, 440, 647
HpyCH4III ACNGT 2 cut(s) 401, 660
HpyCH4V TGCA 5 cut(s) 7, 271, 575, 636, 779
HpyF10VI GCNNNNNNNGC 3 cut(s) 30, 144, 234
HpyF3I CTNAG 1 cut(s) 598
HspAI GCGC 1 cut(s) 343
Kzo9I GATC 2 cut(s) 96, 733
LmnI GCTCC 2 cut(s) 425, 486
Lsp1109I GCAGC 1 cut(s) 156
LweI GCATC 1 cut(s) 562
MaeIII GTNAC 5 cut(s) 100, 190, 325, 393, 593
MalI GATC 2 cut(s) 98, 735
MboI GATC 2 cut(s) 96, 733
MboII GAAGA 6 cut(s) 101, 323, 451, 459, 659, 735
MfeI CAATTG 1 cut(s) 576
MhlI GDGCHC 5 cut(s) 122, 212, 708, 725, 781
MlsI TGGCCA 1 cut(s) 377
MluCI AATT 3 cut(s) 576, 607, 630
MluNI TGGCCA 1 cut(s) 377
MlyI GAGTC 2 cut(s) 39, 243
MmeI TCCRAC 1 cut(s) 623
MnlI CCTC 5 cut(s) 21, 342, 526, 643, 781
Mox20I TGGCCA 1 cut(s) 377
MscI TGGCCA 1 cut(s) 377
MseI TTAA 1 cut(s) 790
MslI CAYNNNNRTG 3 cut(s) 305, 541, 784
Msp20I TGGCCA 1 cut(s) 377
MspR9I CCNGG 6 cut(s) 222, 297, 357, 432, 554, 762
MunI CAATTG 1 cut(s) 576
MvaI CCWGG 6 cut(s) 222, 297, 357, 432, 554, 762
MwoI GCNNNNNNNGC 3 cut(s) 30, 144, 234
NdeII GATC 2 cut(s) 96, 733
NlaIV GGNNCC 2 cut(s) 286, 421
NmuCI GTSAC 5 cut(s) 100, 190, 325, 393, 593
OliI CACNNNNGTG 1 cut(s) 305
PflMI CCANNNNNTGG 1 cut(s) 458
PkrI GCNGC 3 cut(s) 32, 146, 371
PleI GAGTC 2 cut(s) 39, 243
PpsI GAGTC 2 cut(s) 39, 243
Psp6I CCWGG 6 cut(s) 220, 295, 355, 430, 552, 760
PspGI CCWGG 6 cut(s) 220, 295, 355, 430, 552, 760
PspN4I GGNNCC 2 cut(s) 286, 421
PspPI GGNCC 2 cut(s) 284, 449
RsaI GTAC 2 cut(s) 463, 551
RsaNI GTAC 2 cut(s) 462, 550
RseI CAYNNNNRTG 3 cut(s) 305, 541, 784
SaqAI TTAA 1 cut(s) 790
SatI GCNGC 3 cut(s) 31, 145, 370
Sau3AI GATC 2 cut(s) 96, 733
Sau96I GGNCC 2 cut(s) 284, 449
SchI GAGTC 2 cut(s) 39, 243
ScrFI CCNGG 6 cut(s) 222, 297, 357, 432, 554, 762
SduI GDGCHC 5 cut(s) 122, 212, 708, 725, 781
SetI ASST 8 cut(s) 13, 22, 267, 309, 483, 555, 773, 786
SfaNI GCATC 1 cut(s) 562
SfcI CTRYAG 1 cut(s) 519
SinI GGWCC 1 cut(s) 449
SmiMI CAYNNNNRTG 3 cut(s) 305, 541, 784
SmlI CTYRAG 5 cut(s) 47, 251, 386, 671, 772
SmoI CTYRAG 5 cut(s) 47, 251, 386, 671, 772
Sse9I AATT 3 cut(s) 576, 607, 630
SsiI CCGC 2 cut(s) 30, 369
SspI AATATT 1 cut(s) 457
StyD4I CCNGG 6 cut(s) 220, 295, 355, 430, 552, 760
StyI CCWWGG 2 cut(s) 92, 317
TaaI ACNGT 2 cut(s) 401, 660
TaqI TCGA 1 cut(s) 682
TasI AATT 3 cut(s) 576, 607, 630
TauI GCSGC 2 cut(s) 33, 372
Tru1I TTAA 1 cut(s) 790
Tru9I TTAA 1 cut(s) 790
TscAI CASTG 5 cut(s) 177, 406, 592, 665, 713
TseFI GTSAC 5 cut(s) 100, 190, 325, 393, 593
TseI GCWGC 1 cut(s) 144
Tsp45I GTSAC 5 cut(s) 100, 190, 325, 393, 593
TspDTI ATGAA 1 cut(s) 429
TspGWI ACGGA 2 cut(s) 458, 473
TspRI CASTG 5 cut(s) 177, 406, 592, 665, 713
Van91I CCANNNNNTGG 1 cut(s) 458
VneI GTGCAC 1 cut(s) 777
VpaK11BI GGWCC 1 cut(s) 449
XagI CCTNNNNNAGG 2 cut(s) 15, 269
XapI RAATTY 1 cut(s) 630
XmiI GTMKAC 1 cut(s) 522
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.