Rroxscaffold_1G00065700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000181
Physical Location & Seq
Forward (+)
87306937 .. 87307419
483 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00065700.1

Sequence Viewer

Length: 483 bp
ATGTCTCTTGAAAGACTAGTTATCTCCGATCAGAACCCGAACCGCTCCCCACCGGCGCCGAAGCTCCGATCGGGAGAGATCGATGTGGATCACGAGATCCCGACTCATGGTGTCGATGCAAACATGTTTGTGTCACCTGAACAAGCGCTTAAGAAATGGAACGAAGATGGAAATAAGACTGATGAAGACTCAGATGGATCAGAAGAAGGATTTAAACATTGTGAAGTTTGTATGAAGGACGAGGAACACTGGTCATATGATTGCCCGTACTTGGAGTGTATTCCAAACCCCAAGGACACACCTGTTGGCGAGGGCTATATCATAGTTTGCACCCACTTCAGTCAGTTGAAACATGGCCACCCTGATGGAAGCTGGGAAGGACGTGCAACAAGAAATCCTTATGATTCGAGTTTGATATTTCGAAAGCCTGGTGTGATATATCACAAGCCCGATGCTAACGACGAAGACGATGTACTTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

160

Amino Acids

18.11

Weight (kDa)

4.68

Isoelectric Point (pI)

50.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000181)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 55
AccBSI CCGCTC 1 cut(s) 45
AciI CCGC 1 cut(s) 43
AclWI GGATC 3 cut(s) 91, 96, 205
AcoI YGGCCR 1 cut(s) 355
AcuI CTGAAG 1 cut(s) 322
AcyI GRCGYC 1 cut(s) 56
AfaI GTAC 2 cut(s) 269, 474
AfeI AGCGCT 1 cut(s) 147
AfiI CCNNNNNNNGG 2 cut(s) 107, 271
AflII CTTAAG 1 cut(s) 149
AflIII ACRYGT 1 cut(s) 123
AgsI TTSAA 2 cut(s) 11, 349
AhlI ACTAGT 1 cut(s) 16
AjiI CACGTC 1 cut(s) 383
AjnI CCWGG 1 cut(s) 427
AluBI AGCT 2 cut(s) 64, 372
AluI AGCT 2 cut(s) 64, 372
Alw26I GTCTC 1 cut(s) 9
AlwI GGATC 3 cut(s) 91, 96, 205
Aor51HI AGCGCT 1 cut(s) 147
AoxI GGCC 1 cut(s) 355
AspLEI GCGC 2 cut(s) 58, 148
AsuHPI GGTGA 1 cut(s) 126
AsuII TTCGAA 1 cut(s) 421
BalI TGGCCA 1 cut(s) 357
BanI GGYRCC 1 cut(s) 55
BarI GAAGNNNNNNTAC 1 cut(s) 456
BauI CACGAG 1 cut(s) 92
BbsI GAAGAC 2 cut(s) 192, 471
BccI CCATC 3 cut(s) 161, 188, 359
BciT130I CCWGG 1 cut(s) 429
BcoDI GTCTC 1 cut(s) 9
BcuI ACTAGT 1 cut(s) 16
BfaI CTAG 1 cut(s) 17
BfoI RGCGCY 2 cut(s) 59, 149
BfrI CTTAAG 1 cut(s) 149
Bme1390I CCNGG 1 cut(s) 429
BmgBI CACGTC 1 cut(s) 383
BmiI GGNNCC 1 cut(s) 57
BmrFI CCNGG 1 cut(s) 429
BmsI GCATC 2 cut(s) 106, 442
BpiI GAAGAC 2 cut(s) 192, 471
Bpu14I TTCGAA 1 cut(s) 421
Bsa29I ATCGAT 1 cut(s) 81
BsaBI GATNNNNATC 1 cut(s) 87
BsaHI GRCGYC 1 cut(s) 56
BsaJI CCNNGG 1 cut(s) 291
Bsc4I CCNNNNNNNGG 2 cut(s) 107, 271
Bse118I RCCGGY 1 cut(s) 52
Bse1I ACTGG 1 cut(s) 254
Bse8I GATNNNNATC 1 cut(s) 87
BseBI CCWGG 1 cut(s) 429
BseCI ATCGAT 1 cut(s) 81
BseDI CCNNGG 1 cut(s) 291
BseJI GATNNNNATC 1 cut(s) 87
BseLI CCNNNNNNNGG 2 cut(s) 107, 271
BseMII CTCAG 1 cut(s) 204
BseNI ACTGG 1 cut(s) 254
BseYI CCCAGC 1 cut(s) 372
Bsh1285I CGRYCG 1 cut(s) 71
BshFI GGCC 1 cut(s) 357
BshNI GGYRCC 1 cut(s) 55
BshVI ATCGAT 1 cut(s) 81
BsiEI CGRYCG 1 cut(s) 71
BsiSI CCGG 1 cut(s) 53
BslI CCNNNNNNNGG 2 cut(s) 107, 271
BsmAI GTCTC 1 cut(s) 9
BsnI GGCC 1 cut(s) 357
Bsp119I TTCGAA 1 cut(s) 421
Bsp143I GATC 6 cut(s) 28, 68, 78, 88, 96, 197
BspACI CCGC 1 cut(s) 43
BspANI GGCC 1 cut(s) 357
BspCNI CTCAG 1 cut(s) 203
BspDI ATCGAT 1 cut(s) 81
BspLI GGNNCC 1 cut(s) 57
BspPI GGATC 3 cut(s) 91, 96, 205
BspT104I TTCGAA 1 cut(s) 421
BspT107I GGYRCC 1 cut(s) 55
BspTI CTTAAG 1 cut(s) 149
BsrBI CCGCTC 1 cut(s) 45
BsrFI RCCGGY 1 cut(s) 52
BsrI ACTGG 1 cut(s) 254
BssAI RCCGGY 1 cut(s) 52
BssECI CCNNGG 1 cut(s) 291
BssMI GATC 6 cut(s) 28, 68, 78, 88, 96, 197
BssNI GRCGYC 1 cut(s) 56
BssSI CACGAG 1 cut(s) 92
BssT1I CCWWGG 1 cut(s) 291
Bst2BI CACGAG 1 cut(s) 92
Bst2UI CCWGG 1 cut(s) 429
BstACI GRCGYC 1 cut(s) 56
BstAFI CTTAAG 1 cut(s) 149
BstBI TTCGAA 1 cut(s) 421
BstDEI CTNAG 1 cut(s) 190
BstH2I RGCGCY 2 cut(s) 59, 149
BstHHI GCGC 2 cut(s) 58, 148
BstKTI GATC 6 cut(s) 31, 71, 81, 91, 99, 200
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 6 cut(s) 28, 68, 78, 88, 96, 197
BstMCI CGRYCG 1 cut(s) 71
BstNI CCWGG 1 cut(s) 429
BstNSI RCATGY 1 cut(s) 127
BstSCI CCNGG 1 cut(s) 427
BstV2I GAAGAC 2 cut(s) 192, 471
BstX2I RGATCY 1 cut(s) 96
BstXI CCANNNNNNTGG 1 cut(s) 365
BstYI RGATCY 1 cut(s) 96
Bsu15I ATCGAT 1 cut(s) 81
BsuRI GGCC 1 cut(s) 357
BsuTUI ATCGAT 1 cut(s) 81
BtrI CACGTC 1 cut(s) 383
BtsIMutI CAGTG 1 cut(s) 247
CfoI GCGC 2 cut(s) 58, 148
Cfr10I RCCGGY 1 cut(s) 52
ClaI ATCGAT 1 cut(s) 81
Csp6I GTAC 2 cut(s) 268, 473
CviAII CATG 3 cut(s) 107, 124, 353
CviJI RGCY 6 cut(s) 64, 315, 357, 372, 427, 448
CviKI_1 RGCY 6 cut(s) 64, 315, 357, 372, 427, 448
CviQI GTAC 2 cut(s) 268, 473
DdeI CTNAG 1 cut(s) 190
DinI GGCGCC 1 cut(s) 57
DpnI GATC 6 cut(s) 30, 70, 80, 90, 98, 199
DpnII GATC 6 cut(s) 28, 68, 78, 88, 96, 197
DraI TTTAAA 1 cut(s) 214
EaeI YGGCCR 1 cut(s) 355
Eco130I CCWWGG 1 cut(s) 291
Eco47III AGCGCT 1 cut(s) 147
Eco57I CTGAAG 1 cut(s) 322
EcoRII CCWGG 1 cut(s) 427
EcoT14I CCWWGG 1 cut(s) 291
EgeI GGCGCC 1 cut(s) 57
EheI GGCGCC 1 cut(s) 57
ErhI CCWWGG 1 cut(s) 291
FaeI CATG 3 cut(s) 110, 127, 356
FalI AAGNNNNNCTT 2 cut(s) 382, 414
FatI CATG 3 cut(s) 106, 123, 352
FauNDI CATATG 1 cut(s) 256
FspBI CTAG 1 cut(s) 17
GlaI GCGC 2 cut(s) 57, 147
GsaI CCCAGC 1 cut(s) 376
HaeII RGCGCY 2 cut(s) 59, 149
HaeIII GGCC 1 cut(s) 357
HapII CCGG 1 cut(s) 53
HhaI GCGC 2 cut(s) 58, 148
Hin1I GRCGYC 1 cut(s) 56
Hin1II CATG 3 cut(s) 110, 127, 356
Hin6I GCGC 2 cut(s) 56, 146
HinP1I GCGC 2 cut(s) 56, 146
HinfI GANTC 3 cut(s) 103, 188, 404
HpaII CCGG 1 cut(s) 53
HphI GGTGA 1 cut(s) 126
Hpy188I TCNGA 5 cut(s) 28, 33, 68, 193, 202
Hpy188III TCNNGA 4 cut(s) 8, 72, 92, 100
Hpy99I CGWCG 1 cut(s) 464
HpyAV CCTTC 3 cut(s) 200, 229, 371
HpyCH4IV ACGT 1 cut(s) 382
HpyCH4V TGCA 3 cut(s) 119, 330, 386
HpyF3I CTNAG 1 cut(s) 190
HpySE526I ACGT 1 cut(s) 382
Hsp92I GRCGYC 1 cut(s) 56
Hsp92II CATG 3 cut(s) 110, 127, 356
HspAI GCGC 2 cut(s) 56, 146
KasI GGCGCC 1 cut(s) 55
Kzo9I GATC 6 cut(s) 28, 68, 78, 88, 96, 197
LmnI GCTCC 2 cut(s) 50, 69
LpnPI CCDG 8 cut(s) 66, 150, 235, 315, 358, 375, 414, 441
LweI GCATC 2 cut(s) 106, 442
MaeI CTAG 1 cut(s) 17
MaeII ACGT 1 cut(s) 382
MaeIII GTNAC 1 cut(s) 132
MalI GATC 6 cut(s) 30, 70, 80, 90, 98, 199
MbiI CCGCTC 1 cut(s) 45
MboI GATC 6 cut(s) 28, 68, 78, 88, 96, 197
MboII GAAGA 4 cut(s) 176, 197, 215, 476
MflI RGATCY 1 cut(s) 96
MlsI TGGCCA 1 cut(s) 357
MluNI TGGCCA 1 cut(s) 357
Mly113I GGCGCC 1 cut(s) 56
MlyI GAGTC 2 cut(s) 97, 182
MnlI CCTC 2 cut(s) 235, 304
Mox20I TGGCCA 1 cut(s) 357
MscI TGGCCA 1 cut(s) 357
MseI TTAA 3 cut(s) 150, 213, 481
MslI CAYNNNNRTG 2 cut(s) 128, 363
Msp20I TGGCCA 1 cut(s) 357
MspCI CTTAAG 1 cut(s) 149
MspI CCGG 1 cut(s) 53
MspR9I CCNGG 1 cut(s) 429
MvaI CCWGG 1 cut(s) 429
NarI GGCGCC 1 cut(s) 56
NdeI CATATG 1 cut(s) 256
NdeII GATC 6 cut(s) 28, 68, 78, 88, 96, 197
NlaIII CATG 3 cut(s) 110, 127, 356
NlaIV GGNNCC 1 cut(s) 57
NmuCI GTSAC 1 cut(s) 132
NspI RCATGY 1 cut(s) 127
NspV TTCGAA 1 cut(s) 421
PciI ACATGT 1 cut(s) 123
PcsI WCGNNNNNNNCGW 1 cut(s) 465
PfeI GAWTC 1 cut(s) 404
Ple19I CGATCG 1 cut(s) 71
PleI GAGTC 2 cut(s) 97, 182
PluTI GGCGCC 1 cut(s) 59
PpsI GAGTC 2 cut(s) 97, 182
PscI ACATGT 1 cut(s) 123
Psp6I CCWGG 1 cut(s) 427
PspFI CCCAGC 1 cut(s) 372
PspGI CCWGG 1 cut(s) 427
PspN4I GGNNCC 1 cut(s) 57
PsuI RGATCY 1 cut(s) 96
PvuI CGATCG 1 cut(s) 71
RsaI GTAC 2 cut(s) 269, 474
RsaNI GTAC 2 cut(s) 268, 473
RseI CAYNNNNRTG 2 cut(s) 128, 363
SaqAI TTAA 3 cut(s) 150, 213, 481
Sau3AI GATC 6 cut(s) 28, 68, 78, 88, 96, 197
SchI GAGTC 2 cut(s) 97, 182
ScrFI CCNGG 1 cut(s) 429
SetI ASST 5 cut(s) 66, 139, 304, 374, 385
SfaNI GCATC 2 cut(s) 106, 442
SfoI GGCGCC 1 cut(s) 57
SfuI TTCGAA 1 cut(s) 421
SgrAI CRCCGGYG 1 cut(s) 52
SmiMI CAYNNNNRTG 2 cut(s) 128, 363
SmlI CTYRAG 1 cut(s) 149
SmoI CTYRAG 1 cut(s) 149
SpeI ACTAGT 1 cut(s) 16
SsiI CCGC 1 cut(s) 43
SspDI GGCGCC 1 cut(s) 55
SspMI CTAG 1 cut(s) 17
StyD4I CCNGG 1 cut(s) 427
StyI CCWWGG 1 cut(s) 291
TaiI ACGT 1 cut(s) 385
TaqI TCGA 4 cut(s) 81, 114, 407, 421
TatI WGTACW 1 cut(s) 472
TfiI GAWTC 1 cut(s) 404
Tru1I TTAA 3 cut(s) 150, 213, 481
Tru9I TTAA 3 cut(s) 150, 213, 481
TscAI CASTG 1 cut(s) 254
TseFI GTSAC 1 cut(s) 132
Tsp45I GTSAC 1 cut(s) 132
TspDTI ATGAA 2 cut(s) 198, 248
TspRI CASTG 1 cut(s) 254
Vha464I CTTAAG 1 cut(s) 149
XceI RCATGY 1 cut(s) 127
XspI CTAG 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.