Rorug05G0290700

Histone deacetylase HDT1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000181
Physical Location & Seq
Forward (+)
33396932 .. 33397913
982 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0290700.1

Sequence Viewer

Length: 240 bp
ATGAACGCCGTCGAGCAGGTGATGGAGTTTTCTGGTTTTGAAGTCTCTCGTCGCGAACGAGAGTTGCACCACATTTTGCGTGTTCTGAACACCAATGTGGATGGAAATCAGAAGATCATGTTCGCTCTGACCTCCATCAAGGGTATCGGTCGCCGTTTAGCCAACATCGTCTGCAAGAAGGCCGATGTCGACATGAACAGAAGATATTTTTCTCAAGAGTTGCAACTTGGTTACAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

79

Amino Acids

9.17

Weight (kDa)

9.42

Isoelectric Point (pI)

43.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S13 PF00416 27 - 68 1.9e-13 Ribosomal protein S13/S18
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000181)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 7
Acc36I ACCTGC 1 cut(s) 7
AccI GTMKAC 1 cut(s) 189
AccII CGCG 1 cut(s) 54
AgsI TTSAA 1 cut(s) 41
AleI CACNNNNGTG 1 cut(s) 95
AluBI AGCT 1 cut(s) 237
AluI AGCT 1 cut(s) 237
Alw26I GTCTC 1 cut(s) 49
AoxI GGCC 1 cut(s) 180
AsuHPI GGTGA 1 cut(s) 31
BccI CCATC 3 cut(s) 16, 95, 143
BceAI ACGGC 1 cut(s) 138
BcoDI GTCTC 1 cut(s) 49
BfuAI ACCTGC 1 cut(s) 7
BpuEI CTTGAG 1 cut(s) 198
BsaBI GATNNNNATC 1 cut(s) 105
Bse8I GATNNNNATC 1 cut(s) 105
BseGI GGATG 1 cut(s) 106
BseJI GATNNNNATC 1 cut(s) 105
Bsh1236I CGCG 1 cut(s) 54
Bsh1285I CGRYCG 1 cut(s) 151
BshFI GGCC 1 cut(s) 182
BsiEI CGRYCG 1 cut(s) 151
BsmAI GTCTC 1 cut(s) 49
BsnI GGCC 1 cut(s) 182
Bsp143I GATC 1 cut(s) 114
Bsp68I TCGCGA 1 cut(s) 54
BspANI GGCC 1 cut(s) 182
BspFNI CGCG 1 cut(s) 54
BspMI ACCTGC 1 cut(s) 7
BssMI GATC 1 cut(s) 114
BstF5I GGATG 1 cut(s) 106
BstFNI CGCG 1 cut(s) 54
BstKTI GATC 1 cut(s) 117
BstMAI GTCTC 1 cut(s) 49
BstMBI GATC 1 cut(s) 114
BstMCI CGRYCG 1 cut(s) 151
BstUI CGCG 1 cut(s) 54
BsuRI GGCC 1 cut(s) 182
BtsCI GGATG 1 cut(s) 106
BtuMI TCGCGA 1 cut(s) 54
BveI ACCTGC 1 cut(s) 7
CviAII CATG 2 cut(s) 118, 193
CviJI RGCY 3 cut(s) 161, 182, 237
CviKI_1 RGCY 3 cut(s) 161, 182, 237
DpnI GATC 1 cut(s) 116
DpnII GATC 1 cut(s) 114
FaeI CATG 2 cut(s) 121, 196
FaiI YATR 2 cut(s) 119, 194
FatI CATG 2 cut(s) 117, 192
FblI GTMKAC 1 cut(s) 189
FokI GGATG 1 cut(s) 113
HaeIII GGCC 1 cut(s) 182
Hin1II CATG 2 cut(s) 121, 196
HincII GTYRAC 1 cut(s) 190
HindII GTYRAC 1 cut(s) 190
HphI GGTGA 1 cut(s) 31
Hpy166II GTNNAC 1 cut(s) 190
Hpy188I TCNGA 3 cut(s) 87, 111, 129
Hpy188III TCNNGA 2 cut(s) 53, 215
Hpy8I GTNNAC 1 cut(s) 190
Hpy99I CGWCG 2 cut(s) 14, 54
HpyAV CCTTC 1 cut(s) 172
HpyCH4V TGCA 3 cut(s) 67, 174, 223
Hsp92II CATG 2 cut(s) 121, 196
Kzo9I GATC 1 cut(s) 114
LpnPI CCDG 2 cut(s) 2, 18
MaeIII GTNAC 1 cut(s) 230
MalI GATC 1 cut(s) 116
MboI GATC 1 cut(s) 114
MboII GAAGA 2 cut(s) 124, 213
MnlI CCTC 1 cut(s) 142
MslI CAYNNNNRTG 1 cut(s) 95
MvnI CGCG 1 cut(s) 54
NdeII GATC 1 cut(s) 114
NlaIII CATG 2 cut(s) 121, 196
NruI TCGCGA 1 cut(s) 54
OliI CACNNNNGTG 1 cut(s) 95
PaqCI CACCTGC 1 cut(s) 7
PcsI WCGNNNNNNNCGW 1 cut(s) 55
RruI TCGCGA 1 cut(s) 54
RseI CAYNNNNRTG 1 cut(s) 95
SalI GTCGAC 1 cut(s) 188
Sau3AI GATC 1 cut(s) 114
SetI ASST 3 cut(s) 21, 134, 239
SmiMI CAYNNNNRTG 1 cut(s) 95
SmlI CTYRAG 1 cut(s) 213
SmoI CTYRAG 1 cut(s) 213
TaqI TCGA 2 cut(s) 12, 189
TaqII GACCGA 1 cut(s) 137
TspDTI ATGAA 2 cut(s) 17, 209
XmiI GTMKAC 1 cut(s) 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.