FvH4_6g49070

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000181
Physical Location & Seq
Forward (+)
36850175 .. 36851476
1302 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g49070.t2

Sequence Viewer

Length: 492 bp
ATGTTTCCTTCTCTTCAAACAGGTGCCGATCCTAACCATAAATTGTCTGAAAGTGAAGCCGAATCCACATGGATTCTGTTAGATGGGTGGAGAGTTCGAGGAGAGTTGTTTATGTTGCCGCACGAGGAATTCGTAAAAAGGGTGTTTATATCTGATGAGGAATTTGAAAAGATATGCAAGGAAGCCGAGGCAGCTAGGAAACTGGAGATAGCTGAACGTAAGCCTGATAAAAAGCCTAAATCTTGTGAAGTTTGTATGAAGGTCGGGTACCACATGTCATTTCGGTGTCCTTACTTGGAAGATATTTCAAACCCCGACACCGCAGTTGTTGGCGAGGGCTATGAAATAATTTGCCATTGCTGCCTTGAGTCGGATCATGGCCACCCCAAGGGAAGCTGGGCAGGATTTGCATGGAAAAAGAGTTGTGATTGGTTTGAAAAGCTGATGTCCAGTGATCAAGAAGACTCAGATTCAGAATCAGATGAAGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

164

Amino Acids

18.72

Weight (kDa)

4.78

Isoelectric Point (pI)

46.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000181)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 267
AccB1I GGYRCC 2 cut(s) 23, 267
AciI CCGC 2 cut(s) 119, 321
AclWI GGATC 2 cut(s) 23, 381
AcoI YGGCCR 1 cut(s) 379
AcsI RAATTY 2 cut(s) 128, 161
AfaI GTAC 1 cut(s) 269
AfiI CCNNNNNNNGG 2 cut(s) 370, 388
AflIII ACRYGT 1 cut(s) 273
AgsI TTSAA 4 cut(s) 17, 167, 309, 437
AluBI AGCT 4 cut(s) 194, 212, 396, 442
AluI AGCT 4 cut(s) 194, 212, 396, 442
AlwI GGATC 2 cut(s) 23, 381
AoxI GGCC 1 cut(s) 379
ApeKI GCWGC 2 cut(s) 191, 360
ApoI RAATTY 2 cut(s) 128, 161
Asp718I GGTACC 1 cut(s) 267
BalI TGGCCA 1 cut(s) 381
BanI GGYRCC 2 cut(s) 23, 267
BarI GAAGNNNNNNTAC 2 cut(s) 251, 283
BauI CACGAG 1 cut(s) 122
BbsI GAAGAC 1 cut(s) 468
BbvI GCAGC 2 cut(s) 203, 347
BccI CCATC 1 cut(s) 77
BclI TGATCA 1 cut(s) 454
BfaI CTAG 2 cut(s) 195, 490
BisI GCNGC 3 cut(s) 119, 192, 361
BlsI GCNGC 3 cut(s) 120, 193, 362
BmiI GGNNCC 2 cut(s) 25, 269
BpiI GAAGAC 1 cut(s) 468
BpmI CTGGAG 1 cut(s) 224
BpuEI CTTGAG 1 cut(s) 386
BsaJI CCNNGG 2 cut(s) 186, 387
Bsc4I CCNNNNNNNGG 2 cut(s) 370, 388
Bse1I ACTGG 2 cut(s) 207, 450
Bse3DI GCAATG 1 cut(s) 355
BseDI CCNNGG 2 cut(s) 186, 387
BseLI CCNNNNNNNGG 2 cut(s) 370, 388
BseMI GCAATG 1 cut(s) 355
BseMII CTCAG 1 cut(s) 480
BseNI ACTGG 2 cut(s) 207, 450
BseRI GAGGAG 1 cut(s) 114
BseXI GCAGC 2 cut(s) 203, 347
BseYI CCCAGC 1 cut(s) 396
BshFI GGCC 1 cut(s) 381
BshNI GGYRCC 2 cut(s) 23, 267
BslI CCNNNNNNNGG 2 cut(s) 370, 388
BsnI GGCC 1 cut(s) 381
Bsp143I GATC 3 cut(s) 28, 373, 454
BspACI CCGC 2 cut(s) 119, 321
BspANI GGCC 1 cut(s) 381
BspCNI CTCAG 1 cut(s) 479
BspLI GGNNCC 2 cut(s) 25, 269
BspPI GGATC 2 cut(s) 23, 381
BspT107I GGYRCC 2 cut(s) 23, 267
BsrDI GCAATG 1 cut(s) 355
BsrI ACTGG 2 cut(s) 207, 450
BssECI CCNNGG 2 cut(s) 186, 387
BssMI GATC 3 cut(s) 28, 373, 454
BssSI CACGAG 1 cut(s) 122
BssT1I CCWWGG 1 cut(s) 387
Bst2BI CACGAG 1 cut(s) 122
Bst6I CTCTTC 1 cut(s) 18
BstAPI GCANNNNNTGC 1 cut(s) 407
BstDEI CTNAG 1 cut(s) 466
BstKTI GATC 3 cut(s) 31, 376, 457
BstMBI GATC 3 cut(s) 28, 373, 454
BstMWI GCNNNNNNNGC 3 cut(s) 191, 360, 407
BstNSI RCATGY 1 cut(s) 277
BstV1I GCAGC 2 cut(s) 203, 347
BstV2I GAAGAC 1 cut(s) 468
BsuRI GGCC 1 cut(s) 381
BtsIMutI CAGTG 1 cut(s) 457
Csp6I GTAC 1 cut(s) 268
CviAII CATG 4 cut(s) 69, 274, 377, 411
CviQI GTAC 1 cut(s) 268
DdeI CTNAG 1 cut(s) 466
DpnI GATC 3 cut(s) 30, 375, 456
DpnII GATC 3 cut(s) 28, 373, 454
EaeI YGGCCR 1 cut(s) 379
Eam1104I CTCTTC 1 cut(s) 18
EarI CTCTTC 1 cut(s) 18
Eco130I CCWWGG 1 cut(s) 387
EcoRI GAATTC 1 cut(s) 128
EcoT14I CCWWGG 1 cut(s) 387
ErhI CCWWGG 1 cut(s) 387
FaeI CATG 4 cut(s) 72, 277, 380, 414
FatI CATG 4 cut(s) 68, 273, 376, 410
FbaI TGATCA 1 cut(s) 454
Fnu4HI GCNGC 3 cut(s) 119, 192, 361
Fsp4HI GCNGC 3 cut(s) 119, 192, 361
FspBI CTAG 2 cut(s) 195, 490
GluI GCNGC 3 cut(s) 119, 192, 361
GsaI CCCAGC 1 cut(s) 400
GsuI CTGGAG 1 cut(s) 224
HaeIII GGCC 1 cut(s) 381
Hin1II CATG 4 cut(s) 72, 277, 380, 414
HinfI GANTC 6 cut(s) 62, 73, 368, 464, 470, 476
Hpy188I TCNGA 6 cut(s) 49, 154, 373, 469, 475, 481
Hpy188III TCNNGA 1 cut(s) 458
HpyAV CCTTC 2 cut(s) 18, 253
HpyCH4IV ACGT 1 cut(s) 217
HpyCH4V TGCA 2 cut(s) 177, 410
HpyF10VI GCNNNNNNNGC 3 cut(s) 191, 360, 407
HpyF3I CTNAG 1 cut(s) 466
HpySE526I ACGT 1 cut(s) 217
Hsp92II CATG 4 cut(s) 72, 277, 380, 414
KpnI GGTACC 1 cut(s) 271
Ksp22I TGATCA 1 cut(s) 454
Kzo9I GATC 3 cut(s) 28, 373, 454
LpnPI CCDG 6 cut(s) 6, 188, 237, 382, 387, 463
Lsp1109I GCAGC 2 cut(s) 203, 347
MaeI CTAG 2 cut(s) 195, 490
MaeII ACGT 1 cut(s) 217
MalI GATC 3 cut(s) 30, 375, 456
MboI GATC 3 cut(s) 28, 373, 454
MboII GAAGA 3 cut(s) 5, 311, 473
MlsI TGGCCA 1 cut(s) 381
MluCI AATT 4 cut(s) 41, 128, 161, 348
MluNI TGGCCA 1 cut(s) 381
MlyI GAGTC 2 cut(s) 377, 458
MmeI TCCRAC 1 cut(s) 351
MnlI CCTC 5 cut(s) 92, 118, 151, 181, 328
Mox20I TGGCCA 1 cut(s) 381
MscI TGGCCA 1 cut(s) 381
MslI CAYNNNNRTG 1 cut(s) 283
Msp20I TGGCCA 1 cut(s) 381
MwoI GCNNNNNNNGC 3 cut(s) 191, 360, 407
NdeII GATC 3 cut(s) 28, 373, 454
NlaIII CATG 4 cut(s) 72, 277, 380, 414
NlaIV GGNNCC 2 cut(s) 25, 269
NmeAIII GCCGAG 1 cut(s) 211
NspI RCATGY 1 cut(s) 277
PciI ACATGT 1 cut(s) 273
PcsI WCGNNNNNNNCGW 1 cut(s) 129
PfeI GAWTC 4 cut(s) 62, 73, 470, 476
PkrI GCNGC 3 cut(s) 120, 193, 362
PleI GAGTC 2 cut(s) 376, 458
PpsI GAGTC 2 cut(s) 376, 458
PscI ACATGT 1 cut(s) 273
PspFI CCCAGC 1 cut(s) 396
PspN4I GGNNCC 2 cut(s) 25, 269
RsaI GTAC 1 cut(s) 269
RsaNI GTAC 1 cut(s) 268
RseI CAYNNNNRTG 1 cut(s) 283
SatI GCNGC 3 cut(s) 119, 192, 361
Sau3AI GATC 3 cut(s) 28, 373, 454
SchI GAGTC 2 cut(s) 377, 458
SetI ASST 7 cut(s) 25, 196, 214, 220, 264, 398, 444
SmiMI CAYNNNNRTG 1 cut(s) 283
SmlI CTYRAG 1 cut(s) 365
SmoI CTYRAG 1 cut(s) 365
Sse9I AATT 4 cut(s) 41, 128, 161, 348
SsiI CCGC 2 cut(s) 119, 321
SspMI CTAG 2 cut(s) 195, 490
StyI CCWWGG 1 cut(s) 387
TaiI ACGT 1 cut(s) 220
TaqI TCGA 1 cut(s) 97
TasI AATT 4 cut(s) 41, 128, 161, 348
TauI GCSGC 1 cut(s) 121
TfiI GAWTC 4 cut(s) 62, 73, 470, 476
TscAI CASTG 1 cut(s) 457
TseI GCWGC 2 cut(s) 191, 360
TspDTI ATGAA 2 cut(s) 272, 357
TspRI CASTG 1 cut(s) 457
XapI RAATTY 2 cut(s) 128, 161
XceI RCATGY 1 cut(s) 277
XspI CTAG 2 cut(s) 195, 490
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.