Prupe.4G077400_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0000181
Physical Location & Seq
Forward (+)
3764161 .. 3765953
1793 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G077400.1

Sequence Viewer

Length: 534 bp
ATGGACCACGTCTCATCTTTCGAGTGCACGAAATTGGATTTCCATTCGAAGGTGCTCCTTAAGGACGACGGTGGAAAGGACCTTTTATCGCCAGATACGGTCCCCCTCAACTGCGATACGCCAATACTCGATAGCAAGACTGAAGATCGAAAGGCTGCAACACAATGCCTTGAAAAACCTTCGCCTCCTCCTAATGATATATTTGGTGAATGTTTGTATTGTTTAAAAGTGGGTGATCACATTTCACACTTTTGCCCTTACAAATCTAATGTACCAAAGAACGCCATTGTTGGCAGTGCTTGTGTGGTCAATTGCAAGATTTGCGGCTGCCGCTTTAGAGGCTCATGTTGTGCCAAATGTGGCATAAGCCTAGGATATGCAATCCTCAAGAATTGTTCAATATGTAAGAAGGTAGGTGAACACATGAAATATGAGTGCCCGAGCCGCGAGAAGAAATATTATCCTTCTGTTGTTTTTAAGTGCGACCCTTATACCGGTAGTTTTTCTTTCGAGTATGCTCCATTGAAAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

178

Amino Acids

19.6

Weight (kDa)

8.07

Isoelectric Point (pI)

42.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000181)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 447
AciI CCGC 3 cut(s) 324, 331, 445
AcuI CTGAAG 1 cut(s) 162
AfaI GTAC 1 cut(s) 273
AfiI CCNNNNNNNGG 2 cut(s) 49, 494
AflII CTTAAG 1 cut(s) 59
AgeI ACCGGT 1 cut(s) 494
AgsI TTSAA 3 cut(s) 173, 399, 526
AjiI CACGTC 1 cut(s) 10
Alw21I GWGCWC 2 cut(s) 29, 57
Alw26I GTCTC 1 cut(s) 16
Alw44I GTGCAC 1 cut(s) 25
Ama87I CYCGRG 1 cut(s) 439
ApaLI GTGCAC 1 cut(s) 25
ApeKI GCWGC 2 cut(s) 155, 327
AsiGI ACCGGT 1 cut(s) 494
AspA2I CCTAGG 1 cut(s) 370
AspS9I GGNCC 3 cut(s) 4, 79, 100
AsuHPI GGTGA 3 cut(s) 218, 245, 428
AsuII TTCGAA 1 cut(s) 47
AvaI CYCGRG 1 cut(s) 439
AvaII GGWCC 3 cut(s) 4, 79, 100
AvrII CCTAGG 1 cut(s) 370
BaeGI GKGCMC 2 cut(s) 29, 440
Bbv12I GWGCWC 2 cut(s) 29, 57
BbvI GCAGC 2 cut(s) 142, 314
BclI TGATCA 1 cut(s) 235
BcoDI GTCTC 1 cut(s) 16
BfaI CTAG 1 cut(s) 371
BfrI CTTAAG 1 cut(s) 59
BisI GCNGC 5 cut(s) 156, 325, 328, 331, 445
BlnI CCTAGG 1 cut(s) 370
BlsI GCNGC 5 cut(s) 157, 326, 329, 332, 446
Bme18I GGWCC 3 cut(s) 4, 79, 100
BmeT110I CYCGRG 1 cut(s) 439
BmgBI CACGTC 1 cut(s) 10
BmgT120I GGNCC 3 cut(s) 4, 79, 100
BmiI GGNNCC 1 cut(s) 102
Bpu14I TTCGAA 1 cut(s) 47
BpuEI CTTGAG 1 cut(s) 371
BsaJI CCNNGG 1 cut(s) 370
BsaWI WCCGGW 1 cut(s) 494
Bsc4I CCNNNNNNNGG 2 cut(s) 49, 494
Bse118I RCCGGY 1 cut(s) 494
BseDI CCNNGG 1 cut(s) 370
BseLI CCNNNNNNNGG 2 cut(s) 49, 494
BseRI GAGGAG 1 cut(s) 177
BseSI GKGCMC 2 cut(s) 29, 440
BseXI GCAGC 2 cut(s) 142, 314
Bsh1236I CGCG 1 cut(s) 447
BshTI ACCGGT 1 cut(s) 494
BsiHKAI GWGCWC 2 cut(s) 29, 57
BsiHKCI CYCGRG 1 cut(s) 439
BsiSI CCGG 1 cut(s) 495
BslFI GGGAC 1 cut(s) 86
BslI CCNNNNNNNGG 2 cut(s) 49, 494
BsmAI GTCTC 1 cut(s) 16
BsmBI CGTCTC 1 cut(s) 16
BsmFI GGGAC 1 cut(s) 86
BsoBI CYCGRG 1 cut(s) 439
Bsp119I TTCGAA 1 cut(s) 47
Bsp1286I GDGCHC 3 cut(s) 29, 57, 440
Bsp143I GATC 2 cut(s) 145, 235
BspACI CCGC 3 cut(s) 324, 331, 445
BspFNI CGCG 1 cut(s) 447
BspLI GGNNCC 1 cut(s) 102
BspT104I TTCGAA 1 cut(s) 47
BspTI CTTAAG 1 cut(s) 59
BsrFI RCCGGY 1 cut(s) 494
BssAI RCCGGY 1 cut(s) 494
BssECI CCNNGG 1 cut(s) 370
BssMI GATC 2 cut(s) 145, 235
BssT1I CCWWGG 1 cut(s) 370
Bst4CI ACNGT 2 cut(s) 71, 100
BstAFI CTTAAG 1 cut(s) 59
BstAPI GCANNNNNTGC 1 cut(s) 321
BstBI TTCGAA 1 cut(s) 47
BstFNI CGCG 1 cut(s) 447
BstKTI GATC 2 cut(s) 148, 238
BstMAI GTCTC 1 cut(s) 16
BstMBI GATC 2 cut(s) 145, 235
BstMWI GCNNNNNNNGC 4 cut(s) 321, 330, 339, 444
BstSLI GKGCMC 2 cut(s) 29, 440
BstUI CGCG 1 cut(s) 447
BstV1I GCAGC 2 cut(s) 142, 314
BtrI CACGTC 1 cut(s) 10
BtsI GCAGTG 1 cut(s) 301
BtsIMutI CAGTG 1 cut(s) 301
Cfr10I RCCGGY 1 cut(s) 494
Cfr13I GGNCC 3 cut(s) 4, 79, 100
Csp6I GTAC 1 cut(s) 272
CspAI ACCGGT 1 cut(s) 494
CviAII CATG 2 cut(s) 345, 424
CviJI RGCY 5 cut(s) 155, 327, 342, 369, 444
CviKI_1 RGCY 5 cut(s) 155, 327, 342, 369, 444
CviQI GTAC 1 cut(s) 272
DpnI GATC 2 cut(s) 147, 237
DpnII GATC 2 cut(s) 145, 235
DraI TTTAAA 1 cut(s) 225
Eco130I CCWWGG 1 cut(s) 370
Eco47I GGWCC 3 cut(s) 4, 79, 100
Eco57I CTGAAG 1 cut(s) 162
Eco88I CYCGRG 1 cut(s) 439
EcoO109I RGGNCCY 1 cut(s) 79
EcoT14I CCWWGG 1 cut(s) 370
ErhI CCWWGG 1 cut(s) 370
Esp3I CGTCTC 1 cut(s) 16
FaeI CATG 2 cut(s) 348, 427
FaiI YATR 9 cut(s) 200, 346, 365, 378, 403, 425, 432, 492, 516
FaqI GGGAC 1 cut(s) 86
FatI CATG 2 cut(s) 344, 423
FbaI TGATCA 1 cut(s) 235
Fnu4HI GCNGC 5 cut(s) 156, 325, 328, 331, 445
Fsp4HI GCNGC 5 cut(s) 156, 325, 328, 331, 445
FspBI CTAG 1 cut(s) 371
GluI GCNGC 5 cut(s) 156, 325, 328, 331, 445
HapII CCGG 1 cut(s) 495
Hin1II CATG 2 cut(s) 348, 427
HpaII CCGG 1 cut(s) 495
HphI GGTGA 3 cut(s) 218, 245, 428
Hpy166II GTNNAC 2 cut(s) 27, 419
Hpy188III TCNNGA 1 cut(s) 388
Hpy8I GTNNAC 2 cut(s) 27, 419
Hpy99I CGWCG 1 cut(s) 71
HpyAV CCTTC 4 cut(s) 43, 189, 403, 474
HpyCH4III ACNGT 2 cut(s) 71, 100
HpyCH4IV ACGT 1 cut(s) 9
HpyCH4V TGCA 4 cut(s) 27, 158, 315, 380
HpyF10VI GCNNNNNNNGC 4 cut(s) 321, 330, 339, 444
HpySE526I ACGT 1 cut(s) 9
Hsp92II CATG 2 cut(s) 348, 427
Ksp22I TGATCA 1 cut(s) 235
Kzo9I GATC 2 cut(s) 145, 235
LmnI GCTCC 2 cut(s) 60, 523
LpnPI CCDG 2 cut(s) 105, 508
Lsp1109I GCAGC 2 cut(s) 142, 314
MaeI CTAG 1 cut(s) 371
MaeII ACGT 1 cut(s) 9
MalI GATC 2 cut(s) 147, 237
MboI GATC 2 cut(s) 145, 235
MboII GAAGA 2 cut(s) 155, 463
MfeI CAATTG 1 cut(s) 310
MhlI GDGCHC 3 cut(s) 29, 57, 440
MluCI AATT 3 cut(s) 32, 310, 391
MnlI CCTC 5 cut(s) 116, 195, 198, 332, 395
MseI TTAA 3 cut(s) 60, 224, 477
MspCI CTTAAG 1 cut(s) 59
MspI CCGG 1 cut(s) 495
MunI CAATTG 1 cut(s) 310
MvnI CGCG 1 cut(s) 447
MwoI GCNNNNNNNGC 4 cut(s) 321, 330, 339, 444
NdeII GATC 2 cut(s) 145, 235
NlaIII CATG 2 cut(s) 348, 427
NlaIV GGNNCC 1 cut(s) 102
NspV TTCGAA 1 cut(s) 47
PflFI GACNNNGTC 1 cut(s) 8
PinAI ACCGGT 1 cut(s) 494
PkrI GCNGC 5 cut(s) 157, 326, 329, 332, 446
PpuMI RGGWCCY 1 cut(s) 79
Psp5II RGGWCCY 1 cut(s) 79
PspN4I GGNNCC 1 cut(s) 102
PspPI GGNCC 3 cut(s) 4, 79, 100
PspPPI RGGWCCY 1 cut(s) 79
PsyI GACNNNGTC 1 cut(s) 8
RsaI GTAC 1 cut(s) 273
RsaNI GTAC 1 cut(s) 272
SaqAI TTAA 3 cut(s) 60, 224, 477
SatI GCNGC 5 cut(s) 156, 325, 328, 331, 445
Sau3AI GATC 2 cut(s) 145, 235
Sau96I GGNCC 3 cut(s) 4, 79, 100
SduI GDGCHC 3 cut(s) 29, 57, 440
SetI ASST 6 cut(s) 12, 54, 84, 181, 414, 418
SfuI TTCGAA 1 cut(s) 47
SinI GGWCC 3 cut(s) 4, 79, 100
SmlI CTYRAG 2 cut(s) 59, 386
SmoI CTYRAG 2 cut(s) 59, 386
Sse9I AATT 3 cut(s) 32, 310, 391
SsiI CCGC 3 cut(s) 324, 331, 445
SspI AATATT 1 cut(s) 458
SspMI CTAG 1 cut(s) 371
StyI CCWWGG 1 cut(s) 370
TaaI ACNGT 2 cut(s) 71, 100
TaiI ACGT 1 cut(s) 12
TaqI TCGA 5 cut(s) 21, 47, 129, 148, 510
TasI AATT 3 cut(s) 32, 310, 391
TauI GCSGC 3 cut(s) 327, 333, 447
Tru1I TTAA 3 cut(s) 60, 224, 477
Tru9I TTAA 3 cut(s) 60, 224, 477
TscAI CASTG 1 cut(s) 301
TseI GCWGC 2 cut(s) 155, 327
TspDTI ATGAA 1 cut(s) 440
TspRI CASTG 1 cut(s) 301
Tth111I GACNNNGTC 1 cut(s) 8
Vha464I CTTAAG 1 cut(s) 59
VneI GTGCAC 1 cut(s) 25
VpaK11BI GGWCC 3 cut(s) 4, 79, 100
XmaJI CCTAGG 1 cut(s) 370
XspI CTAG 1 cut(s) 371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.