RLG00000032146

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000181
Physical Location & Seq
Forward (+)
11394926 .. 11398998
4073 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032146

Sequence Viewer

Length: 519 bp
ATGGCCCCCTGGTATATGGATCCAGCCAATACAATCAACCGCGACAAGTCTCATGGTAGCAAGGGCGGCAATGCCACAAGACTCAAGTGGAGATACCCACCCATAGATGGTCCCTACAAGCTCTATGAAGGCTCCAATTATTTAGCCATAAATGCAGGAGAACCAAGGATCGTCACTTCTCTTCAGAAGTGCCCCAATAGTCCTGATGGCAATGGCAGCAAGGCCAACAGAAGCAAGTCTCCAGTGTTCACTATGGATGCTGTCACTTCTCTCCACAAGTGCCCCAGTAATCCTGGTAGCAAGGGTGGCAAGGCCAAAAGACTCAAGTGGACACACCTTGTGCAGGATTACGAAGGCCCCAGTTCTCCTGGCACAAAGGTGGAAGAACCAAGGATTGTCACTCCTCTCCAGAAGCACCCCAGTAATCGTGGTATCAAGGGCGGCGTGGCCAAAAAACTCAAGTGGTCACACAGTGCTTTGGATTATGAAGGCTCCAGTTCTCCTGTGAATCAATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

173

Amino Acids

18.8

Weight (kDa)

9.81

Isoelectric Point (pI)

37.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000181)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 42
AciI CCGC 3 cut(s) 40, 66, 441
AclWI GGATC 3 cut(s) 14, 27, 176
AcoI YGGCCR 1 cut(s) 447
AcuI CTGAAG 1 cut(s) 167
AdeI CACNNNGTG 2 cut(s) 340, 473
AfiI CCNNNNNNNGG 2 cut(s) 107, 343
AjnI CCWGG 3 cut(s) 8, 292, 367
AleI CACNNNNGTG 1 cut(s) 377
AluBI AGCT 1 cut(s) 121
AluI AGCT 1 cut(s) 121
Alw26I GTCTC 2 cut(s) 54, 243
AlwI GGATC 3 cut(s) 14, 27, 176
AoxI GGCC 5 cut(s) 3, 222, 312, 355, 447
ApeKI GCWGC 1 cut(s) 216
AspS9I GGNCC 3 cut(s) 4, 110, 356
AvaII GGWCC 1 cut(s) 110
BaeGI GKGCMC 2 cut(s) 194, 284
BalI TGGCCA 1 cut(s) 449
BamHI GGATCC 1 cut(s) 19
BbvI GCAGC 1 cut(s) 228
BccI CCATC 2 cut(s) 101, 200
BciT130I CCWGG 3 cut(s) 10, 294, 369
BcoDI GTCTC 2 cut(s) 54, 243
BisI GCNGC 3 cut(s) 67, 217, 442
BlsI GCNGC 3 cut(s) 68, 218, 443
Bme1390I CCNGG 3 cut(s) 10, 294, 369
Bme18I GGWCC 1 cut(s) 110
BmgT120I GGNCC 3 cut(s) 4, 110, 356
BmiI GGNNCC 6 cut(s) 6, 21, 112, 133, 358, 493
BmrFI CCNGG 3 cut(s) 10, 294, 369
BmrI ACTGGG 3 cut(s) 279, 354, 414
BmsI GCATC 1 cut(s) 247
BmuI ACTGGG 3 cut(s) 279, 354, 414
BpmI CTGGAG 3 cut(s) 225, 392, 478
BpuEI CTTGAG 3 cut(s) 68, 308, 443
BsaJI CCNNGG 3 cut(s) 8, 164, 389
Bsc4I CCNNNNNNNGG 2 cut(s) 107, 343
Bse1I ACTGG 5 cut(s) 242, 285, 360, 420, 495
Bse3DI GCAATG 2 cut(s) 76, 217
BseBI CCWGG 3 cut(s) 10, 294, 369
BseDI CCNNGG 3 cut(s) 8, 164, 389
BseGI GGATG 1 cut(s) 262
BseLI CCNNNNNNNGG 2 cut(s) 107, 343
BseMI GCAATG 2 cut(s) 76, 217
BseNI ACTGG 5 cut(s) 242, 285, 360, 420, 495
BseRI GAGGAG 1 cut(s) 393
BseSI GKGCMC 2 cut(s) 194, 284
BseXI GCAGC 1 cut(s) 228
BsgI GTGCAG 1 cut(s) 362
Bsh1236I CGCG 1 cut(s) 42
BshFI GGCC 5 cut(s) 5, 224, 314, 357, 449
BslFI GGGAC 1 cut(s) 96
BslI CCNNNNNNNGG 2 cut(s) 107, 343
BsmAI GTCTC 2 cut(s) 54, 243
BsmFI GGGAC 1 cut(s) 96
BsnI GGCC 5 cut(s) 5, 224, 314, 357, 449
Bsp1286I GDGCHC 2 cut(s) 194, 284
Bsp143I GATC 2 cut(s) 19, 168
BspACI CCGC 3 cut(s) 40, 66, 441
BspANI GGCC 5 cut(s) 5, 224, 314, 357, 449
BspFNI CGCG 1 cut(s) 42
BspLI GGNNCC 6 cut(s) 6, 21, 112, 133, 358, 493
BspPI GGATC 3 cut(s) 14, 27, 176
BsrDI GCAATG 2 cut(s) 76, 217
BsrI ACTGG 5 cut(s) 242, 285, 360, 420, 495
BssECI CCNNGG 3 cut(s) 8, 164, 389
BssMI GATC 2 cut(s) 19, 168
BssT1I CCWWGG 2 cut(s) 164, 389
Bst2UI CCWGG 3 cut(s) 10, 294, 369
Bst4CI ACNGT 1 cut(s) 473
Bst6I CTCTTC 1 cut(s) 186
BstENI CCTNNNNNAGG 1 cut(s) 341
BstF5I GGATG 1 cut(s) 262
BstFNI CGCG 1 cut(s) 42
BstKTI GATC 2 cut(s) 22, 171
BstMAI GTCTC 2 cut(s) 54, 243
BstMBI GATC 2 cut(s) 19, 168
BstMWI GCNNNNNNNGC 4 cut(s) 66, 152, 216, 306
BstNI CCWGG 3 cut(s) 10, 294, 369
BstSCI CCNGG 3 cut(s) 8, 292, 367
BstSLI GKGCMC 2 cut(s) 194, 284
BstUI CGCG 1 cut(s) 42
BstV1I GCAGC 1 cut(s) 228
BstX2I RGATCY 1 cut(s) 19
BstYI RGATCY 1 cut(s) 19
BsuRI GGCC 5 cut(s) 5, 224, 314, 357, 449
BtsCI GGATG 1 cut(s) 262
BtsIMutI CAGTG 2 cut(s) 249, 478
Cfr13I GGNCC 3 cut(s) 4, 110, 356
CviAII CATG 1 cut(s) 53
DpnI GATC 2 cut(s) 21, 170
DpnII GATC 2 cut(s) 19, 168
DraIII CACNNNGTG 2 cut(s) 340, 473
EaeI YGGCCR 1 cut(s) 447
Eam1104I CTCTTC 1 cut(s) 186
EarI CTCTTC 1 cut(s) 186
Eco130I CCWWGG 2 cut(s) 164, 389
Eco47I GGWCC 1 cut(s) 110
Eco57I CTGAAG 1 cut(s) 167
EcoNI CCTNNNNNAGG 1 cut(s) 341
EcoO109I RGGNCCY 1 cut(s) 356
EcoRII CCWGG 3 cut(s) 8, 292, 367
EcoT14I CCWWGG 2 cut(s) 164, 389
ErhI CCWWGG 2 cut(s) 164, 389
FaeI CATG 1 cut(s) 56
FaiI YATR 8 cut(s) 15, 17, 54, 104, 126, 149, 254, 486
FaqI GGGAC 1 cut(s) 96
FatI CATG 1 cut(s) 52
Fnu4HI GCNGC 3 cut(s) 67, 217, 442
FokI GGATG 1 cut(s) 269
Fsp4HI GCNGC 3 cut(s) 67, 217, 442
GluI GCNGC 3 cut(s) 67, 217, 442
GsuI CTGGAG 3 cut(s) 225, 392, 478
HaeIII GGCC 5 cut(s) 5, 224, 314, 357, 449
Hin1II CATG 1 cut(s) 56
HinfI GANTC 3 cut(s) 81, 321, 508
Hpy166II GTNNAC 2 cut(s) 249, 330
Hpy188I TCNGA 1 cut(s) 186
Hpy188III TCNNGA 2 cut(s) 203, 409
Hpy8I GTNNAC 2 cut(s) 249, 330
HpyAV CCTTC 3 cut(s) 122, 347, 482
HpyCH4III ACNGT 1 cut(s) 473
HpyCH4V TGCA 2 cut(s) 155, 343
HpyF10VI GCNNNNNNNGC 4 cut(s) 66, 152, 216, 306
Hsp92II CATG 1 cut(s) 56
Kzo9I GATC 2 cut(s) 19, 168
LmnI GCTCC 2 cut(s) 137, 497
Lsp1109I GCAGC 1 cut(s) 228
LweI GCATC 1 cut(s) 247
MaeIII GTNAC 4 cut(s) 172, 262, 397, 465
MalI GATC 2 cut(s) 21, 170
MboI GATC 2 cut(s) 19, 168
MboII GAAGA 2 cut(s) 173, 395
MflI RGATCY 1 cut(s) 19
MhlI GDGCHC 2 cut(s) 194, 284
MlsI TGGCCA 1 cut(s) 449
MluCI AATT 1 cut(s) 136
MluNI TGGCCA 1 cut(s) 449
MlyI GAGTC 2 cut(s) 75, 315
MnlI CCTC 1 cut(s) 414
Mox20I TGGCCA 1 cut(s) 449
MscI TGGCCA 1 cut(s) 449
MslI CAYNNNNRTG 1 cut(s) 377
Msp20I TGGCCA 1 cut(s) 449
MspR9I CCNGG 3 cut(s) 10, 294, 369
MvaI CCWGG 3 cut(s) 10, 294, 369
MvnI CGCG 1 cut(s) 42
MwoI GCNNNNNNNGC 4 cut(s) 66, 152, 216, 306
NdeII GATC 2 cut(s) 19, 168
NlaIII CATG 1 cut(s) 56
NlaIV GGNNCC 6 cut(s) 6, 21, 112, 133, 358, 493
NmuCI GTSAC 4 cut(s) 172, 262, 397, 465
OliI CACNNNNGTG 1 cut(s) 377
PfeI GAWTC 1 cut(s) 508
PkrI GCNGC 3 cut(s) 68, 218, 443
PleI GAGTC 2 cut(s) 75, 315
PpsI GAGTC 2 cut(s) 75, 315
Psp6I CCWGG 3 cut(s) 8, 292, 367
PspGI CCWGG 3 cut(s) 8, 292, 367
PspN4I GGNNCC 6 cut(s) 6, 21, 112, 133, 358, 493
PspPI GGNCC 3 cut(s) 4, 110, 356
PsuI RGATCY 1 cut(s) 19
RseI CAYNNNNRTG 1 cut(s) 377
SatI GCNGC 3 cut(s) 67, 217, 442
Sau3AI GATC 2 cut(s) 19, 168
Sau96I GGNCC 3 cut(s) 4, 110, 356
SchI GAGTC 2 cut(s) 75, 315
ScrFI CCNGG 3 cut(s) 10, 294, 369
SduI GDGCHC 2 cut(s) 194, 284
SetI ASST 3 cut(s) 123, 339, 381
SfaNI GCATC 1 cut(s) 247
SinI GGWCC 1 cut(s) 110
SmiMI CAYNNNNRTG 1 cut(s) 377
SmlI CTYRAG 3 cut(s) 83, 323, 458
SmoI CTYRAG 3 cut(s) 83, 323, 458
Sse9I AATT 1 cut(s) 136
SsiI CCGC 3 cut(s) 40, 66, 441
SspI AATATT 1 cut(s) 515
StyD4I CCNGG 3 cut(s) 8, 292, 367
StyI CCWWGG 2 cut(s) 164, 389
TaaI ACNGT 1 cut(s) 473
TasI AATT 1 cut(s) 136
TauI GCSGC 2 cut(s) 69, 444
TfiI GAWTC 1 cut(s) 508
TscAI CASTG 2 cut(s) 249, 478
TseFI GTSAC 4 cut(s) 172, 262, 397, 465
TseI GCWGC 1 cut(s) 216
Tsp45I GTSAC 4 cut(s) 172, 262, 397, 465
TspDTI ATGAA 2 cut(s) 141, 501
TspRI CASTG 2 cut(s) 249, 478
VpaK11BI GGWCC 1 cut(s) 110
XagI CCTNNNNNAGG 1 cut(s) 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.