Rorug05G0290800

Histone deacetylase HDT1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000181
Physical Location & Seq
Forward (+)
33415578 .. 33420862
5285 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0290800.1

Sequence Viewer

Length: 1635 bp
ATGGAAATTTCCTCAGTTCCGATCAGTTCTTGCTCCAAAGAGCACCAGAAAATCTACCGGGAGTGGTTTCAGTTAGCAGATTCAGATAATGATGGCCGCATTACGGGGAGTGATGCTATTAAGTTCTTCGGCATGTCCAATCTGTCTCGGCAAGATCTCAAGCAGGTGTGGGCGATTACCGATTCAAAGAGGCAGGGTTTTCTCGGTTTCACTGAGTTCATTACTGCTATGCAGCTAGTTTCTCTTGCACAAGCTGGACATGAGATTACAAATGATTTATTGACCAGCAATGACTTGGAGAACTTGAAACCTCCTGTCATGGAGGGGTTGGATGTGTTATTAGCGAAAAAAAAGCGTTCGAACAAGACAAATGAGAACGAAGTAAACGGTACTCCTGTGGTGCAACAATCACCTTCAGCACTTTGGTTTTCTTCAAAATCAGCAAAAAAGGTTCCGCTCTCTGCTGTAACATCAATTGTTGATGGGTTGAAGAGATTATATATCCAGAAGCTGAAGCCATTAGAAGTTACTTACCGGTTTAATGATTTTGTATCTCCATTACTGACAAACAGTGATTTTGATGCCAAACCCATGGTTATGCTTTTGGGTCAATACTCCACTGGGAAAACAACATTTATTAAACATTTGCTTAAAACTAGTTATCCAGGAGCTCACATTGGTCCTGAGCCTACAACAGATAGATTTGTTGTTGTTATGTCTGGACCTGATGAAAGAAGTGTTCCTGGGAATACTATTGCGGTGCAAGCTGACATGCCATTTAGTGGTCTCACATCTTTTGGAACATCATTCTTGTCAAAGTTTGAGTGTTCCCAAATGCCACATTCTTTGTTGGAGCACATCACATTTGTAGATACTCCTGGCGTTTTATCTGGAGAGAAGCAACGAACCCAACGAGCCTATGATTTTACTGGAGTAACTTCATGGTTCGCTTCAAAGTGTGACCTCATTCTACTTTTGTTTGATCCTCACAAACTTGATGTGAGTGATGAGTTCAAGCGTGTGATTTCATCTTTGCGTGGTCATGACGATAAGATCCGCGTTGTACTCAATAAGGCAGATCAAATCGATACCCAACAATTAATGAGGGTTTATGGAGCATTGATGTGGTCCCTCGGAAAGGTTCTGAATACTCCTGAGGTCATGCGAGTTTATATTGGATCATTCAATGACAAACCTGTAAATGAGGCTGCTTCTGGTCCAGTAGGGAAAGAACTCTTTGAGAGAGAACAAGAGGATCTTCTTTCTGACTTGAAGGATATTCCTAAGAAGTCTTGTGATCGCCGGATCAATGAATTTGTTAAGCGTGCCAGAGCTGCCAAGATACATGCTTACATTATTAGCCATTTGAGAAAAGAGATGCCTGCTTTGATTGGGAAAGCCAAGACTCAAAAGAAACTTACTGATAATTTGGAAGATGAGTTTAAAAAGGTTCAAAGGGAATTTCATCTACCTCCAGGGGATTTTCCGAATGTTGAGCAATTCAGGGAGGCCTTAAGTGGTTACAGCTTTGACAATTTCGAGAAATTGAAGCCTAGTATGATAAAAGCAGTTGACGACATGCTGGGTTATGATATCCCGGAGCTTTTGAAGAATTTCAGAAATCCATACGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

544

Amino Acids

61.37

Weight (kDa)

7.66

Isoelectric Point (pI)

30.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EH PF12763 13 - 89 1.3e-11 EH domain
EF-hand_7 PF13499 18 - 78 8.1e-08 EF-hand domain pair
EHD_N PF16880 162 - 194 1e-15 N-terminal EH-domain containing protein
Dynamin_N PF00350 199 - 359 9.2e-14 Dynamin family
MMR_HSR1 PF01926 199 - 358 1.3e-07 50S ribosome-binding GTPase
GTP_EFTU PF00009 199 - 393 7.5e-06 Elongation factor Tu GTP binding domain
DUF5600 PF18150 434 - 535 1.7e-38 Domain of unknown function (DUF5600)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000181)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 154
Acc36I ACCTGC 1 cut(s) 154
AccB7I CCANNNNNTGG 1 cut(s) 782
AccBSI CCGCTC 1 cut(s) 457
AccII CGCG 1 cut(s) 1059
AciI CCGC 4 cut(s) 97, 455, 758, 1057
AclWI GGATC 5 cut(s) 977, 1048, 1186, 1263, 1313
AcoI YGGCCR 1 cut(s) 94
AcsI RAATTY 4 cut(s) 6, 1313, 1460, 1612
AcuI CTGAAG 2 cut(s) 399, 533
AfaI GTAC 2 cut(s) 391, 1065
AfiI CCNNNNNNNGG 3 cut(s) 103, 782, 1138
AflII CTTAAG 1 cut(s) 1513
AgeI ACCGGT 1 cut(s) 534
AhlI ACTAGT 1 cut(s) 656
AjnI CCWGG 4 cut(s) 664, 742, 877, 1474
AluBI AGCT 8 cut(s) 235, 254, 511, 671, 767, 1334, 1527, 1603
AluI AGCT 8 cut(s) 235, 254, 511, 671, 767, 1334, 1527, 1603
Alw21I GWGCWC 3 cut(s) 45, 673, 858
Alw26I GTCTC 2 cut(s) 150, 791
AlwI GGATC 5 cut(s) 977, 1048, 1186, 1263, 1313
AlwNI CAGNNNCTG 1 cut(s) 511
AoxI GGCC 2 cut(s) 94, 1509
ApeKI GCWGC 3 cut(s) 232, 1208, 1334
ApoI RAATTY 4 cut(s) 6, 1313, 1460, 1612
AseI ATTAAT 1 cut(s) 1100
AsiGI ACCGGT 1 cut(s) 534
Asp700I GAANNNNTTC 1 cut(s) 1613
AspS9I GGNCC 4 cut(s) 680, 722, 1128, 1217
AsuC2I CCSGG 2 cut(s) 59, 1598
AsuHPI GGTGA 1 cut(s) 402
AsuII TTCGAA 1 cut(s) 359
AvaII GGWCC 4 cut(s) 680, 722, 1128, 1217
AxyI CCTNAGG 1 cut(s) 1155
BaeI ACNNNNGTAYC 2 cut(s) 381, 414
BanII GRGCYC 1 cut(s) 673
Bbv12I GWGCWC 3 cut(s) 45, 673, 858
BbvI GCAGC 3 cut(s) 244, 1195, 1321
BccI CCATC 2 cut(s) 86, 476
BciT130I CCWGG 4 cut(s) 666, 744, 879, 1476
BcnI CCSGG 2 cut(s) 59, 1598
BcoDI GTCTC 2 cut(s) 150, 791
BcuI ACTAGT 1 cut(s) 656
BfaI CTAG 3 cut(s) 236, 657, 1554
BfrI CTTAAG 1 cut(s) 1513
BfuAI ACCTGC 1 cut(s) 154
BglII AGATCT 1 cut(s) 154
BisI GCNGC 4 cut(s) 97, 233, 1209, 1335
BlsI GCNGC 4 cut(s) 98, 234, 1210, 1336
Bme1390I CCNGG 6 cut(s) 59, 666, 744, 879, 1476, 1598
Bme18I GGWCC 4 cut(s) 680, 722, 1128, 1217
BmgT120I GGNCC 4 cut(s) 680, 722, 1128, 1217
BmiI GGNNCC 2 cut(s) 453, 1130
BmrFI CCNGG 6 cut(s) 59, 666, 744, 879, 1476, 1598
BmrI ACTGGG 1 cut(s) 630
BmsI GCATC 3 cut(s) 103, 571, 1368
BmuI ACTGGG 1 cut(s) 630
BpmI CTGGAG 3 cut(s) 912, 951, 1458
Bpu10I CCTNAGC 1 cut(s) 684
Bpu14I TTCGAA 1 cut(s) 359
BpuEI CTTGAG 1 cut(s) 143
BpuMI CCSGG 2 cut(s) 59, 1598
Bsa29I ATCGAT 1 cut(s) 1086
BsaI GGTCTC 1 cut(s) 791
BsaJI CCNNGG 4 cut(s) 591, 743, 1132, 1475
BsaWI WCCGGW 1 cut(s) 534
Bsc4I CCNNNNNNNGG 3 cut(s) 103, 782, 1138
Bse118I RCCGGY 1 cut(s) 534
Bse1I ACTGG 3 cut(s) 625, 934, 1220
Bse21I CCTNAGG 1 cut(s) 1155
Bse3DI GCAATG 1 cut(s) 295
BseBI CCWGG 4 cut(s) 666, 744, 879, 1476
BseCI ATCGAT 1 cut(s) 1086
BseDI CCNNGG 4 cut(s) 591, 743, 1132, 1475
BseGI GGATG 1 cut(s) 337
BseLI CCNNNNNNNGG 3 cut(s) 103, 782, 1138
BseMI GCAATG 1 cut(s) 295
BseMII CTCAG 4 cut(s) 27, 204, 675, 1146
BseNI ACTGG 3 cut(s) 625, 934, 1220
BseXI GCAGC 3 cut(s) 244, 1195, 1321
BseYI CCCAGC 1 cut(s) 1582
Bsh1236I CGCG 1 cut(s) 1059
BshFI GGCC 2 cut(s) 96, 1511
BshTI ACCGGT 1 cut(s) 534
BshVI ATCGAT 1 cut(s) 1086
BsiHKAI GWGCWC 3 cut(s) 45, 673, 858
BsiSI CCGG 4 cut(s) 58, 535, 1303, 1598
BslFI GGGAC 1 cut(s) 1114
BslI CCNNNNNNNGG 3 cut(s) 103, 782, 1138
BsmAI GTCTC 2 cut(s) 150, 791
BsmFI GGGAC 1 cut(s) 1114
BsnI GGCC 2 cut(s) 96, 1511
Bso31I GGTCTC 1 cut(s) 791
Bsp119I TTCGAA 1 cut(s) 359
Bsp1286I GDGCHC 3 cut(s) 45, 673, 858
Bsp143I GATC 9 cut(s) 21, 154, 982, 1053, 1078, 1178, 1255, 1297, 1305
Bsp19I CCATGG 1 cut(s) 591
BspACI CCGC 4 cut(s) 97, 455, 758, 1057
BspANI GGCC 2 cut(s) 96, 1511
BspCNI CTCAG 4 cut(s) 26, 205, 676, 1147
BspDI ATCGAT 1 cut(s) 1086
BspFNI CGCG 1 cut(s) 1059
BspHI TCATGA 1 cut(s) 1042
BspLI GGNNCC 2 cut(s) 453, 1130
BspMI ACCTGC 1 cut(s) 154
BspPI GGATC 5 cut(s) 977, 1048, 1186, 1263, 1313
BspT104I TTCGAA 1 cut(s) 359
BspTI CTTAAG 1 cut(s) 1513
BspTNI GGTCTC 1 cut(s) 791
BsrBI CCGCTC 1 cut(s) 457
BsrDI GCAATG 1 cut(s) 295
BsrFI RCCGGY 1 cut(s) 534
BsrI ACTGG 3 cut(s) 625, 934, 1220
BssAI RCCGGY 1 cut(s) 534
BssECI CCNNGG 4 cut(s) 591, 743, 1132, 1475
BssMI GATC 9 cut(s) 21, 154, 982, 1053, 1078, 1178, 1255, 1297, 1305
BssT1I CCWWGG 1 cut(s) 591
Bst2UI CCWGG 4 cut(s) 666, 744, 879, 1476
Bst4CI ACNGT 2 cut(s) 389, 572
Bst6I CTCTTC 1 cut(s) 485
BstAFI CTTAAG 1 cut(s) 1513
BstBI TTCGAA 1 cut(s) 359
BstC8I GCNNGC 3 cut(s) 765, 1326, 1383
BstDEI CTNAG 5 cut(s) 13, 213, 684, 1155, 1284
BstDSI CCRYGG 1 cut(s) 591
BstENI CCTNNNNNAGG 1 cut(s) 1136
BstF5I GGATG 1 cut(s) 337
BstFNI CGCG 1 cut(s) 1059
BstKTI GATC 9 cut(s) 24, 157, 985, 1056, 1081, 1181, 1258, 1300, 1308
BstMAI GTCTC 2 cut(s) 150, 791
BstMBI GATC 9 cut(s) 21, 154, 982, 1053, 1078, 1178, 1255, 1297, 1305
BstMWI GCNNNNNNNGC 2 cut(s) 764, 1334
BstNI CCWGG 4 cut(s) 666, 744, 879, 1476
BstNSI RCATGY 4 cut(s) 136, 775, 1349, 1582
BstSCI CCNGG 6 cut(s) 57, 664, 742, 877, 1474, 1596
BstUI CGCG 1 cut(s) 1059
BstV1I GCAGC 3 cut(s) 244, 1195, 1321
BstX2I RGATCY 3 cut(s) 154, 1053, 1255
BstXI CCANNNNNNTGG 1 cut(s) 592
BstYI RGATCY 3 cut(s) 154, 1053, 1255
Bsu15I ATCGAT 1 cut(s) 1086
Bsu36I CCTNAGG 1 cut(s) 1155
BsuRI GGCC 2 cut(s) 96, 1511
BsuTUI ATCGAT 1 cut(s) 1086
BtgI CCRYGG 1 cut(s) 591
BtsCI GGATG 1 cut(s) 337
BtsIMutI CAGTG 3 cut(s) 210, 577, 618
BveI ACCTGC 1 cut(s) 154
Cac8I GCNNGC 3 cut(s) 765, 1326, 1383
CaiI CAGNNNCTG 1 cut(s) 511
CciI TCATGA 1 cut(s) 1042
Cfr10I RCCGGY 1 cut(s) 534
Cfr13I GGNCC 4 cut(s) 680, 722, 1128, 1217
ClaI ATCGAT 1 cut(s) 1086
Csp6I GTAC 2 cut(s) 390, 1064
CspAI ACCGGT 1 cut(s) 534
CspCI CAANNNNNGTGG 2 cut(s) 828, 863
CviQI GTAC 2 cut(s) 390, 1064
DdeI CTNAG 5 cut(s) 13, 213, 684, 1155, 1284
DpnI GATC 9 cut(s) 23, 156, 984, 1055, 1080, 1180, 1257, 1299, 1307
DpnII GATC 9 cut(s) 21, 154, 982, 1053, 1078, 1178, 1255, 1297, 1305
DraI TTTAAA 1 cut(s) 1444
EaeI YGGCCR 1 cut(s) 94
Eam1104I CTCTTC 1 cut(s) 485
EarI CTCTTC 1 cut(s) 485
Ecl136II GAGCTC 1 cut(s) 671
Eco130I CCWWGG 1 cut(s) 591
Eco147I AGGCCT 1 cut(s) 1511
Eco24I GRGCYC 1 cut(s) 673
Eco31I GGTCTC 1 cut(s) 791
Eco32I GATATC 1 cut(s) 1594
Eco47I GGWCC 4 cut(s) 680, 722, 1128, 1217
Eco53kI GAGCTC 1 cut(s) 671
Eco57I CTGAAG 2 cut(s) 399, 533
Eco81I CCTNAGG 1 cut(s) 1155
EcoICRI GAGCTC 1 cut(s) 671
EcoNI CCTNNNNNAGG 1 cut(s) 1136
EcoRII CCWGG 4 cut(s) 664, 742, 877, 1474
EcoRV GATATC 1 cut(s) 1594
EcoT14I CCWWGG 1 cut(s) 591
EcoT38I GRGCYC 1 cut(s) 673
ErhI CCWWGG 1 cut(s) 591
FalI AAGNNNNNCTT 2 cut(s) 1242, 1274
FaqI GGGAC 1 cut(s) 1114
Fnu4HI GCNGC 4 cut(s) 97, 233, 1209, 1335
FokI GGATG 1 cut(s) 344
FriOI GRGCYC 1 cut(s) 673
Fsp4HI GCNGC 4 cut(s) 97, 233, 1209, 1335
FspBI CTAG 3 cut(s) 236, 657, 1554
GluI GCNGC 4 cut(s) 97, 233, 1209, 1335
GsaI CCCAGC 1 cut(s) 1586
GsuI CTGGAG 3 cut(s) 912, 951, 1458
HaeIII GGCC 2 cut(s) 96, 1511
HapII CCGG 4 cut(s) 58, 535, 1303, 1598
HincII GTYRAC 1 cut(s) 1573
HindII GTYRAC 1 cut(s) 1573
HinfI GANTC 3 cut(s) 80, 182, 1405
HpaII CCGG 4 cut(s) 58, 535, 1303, 1598
HphI GGTGA 1 cut(s) 402
Hpy166II GTNNAC 2 cut(s) 385, 1573
Hpy188I TCNGA 7 cut(s) 21, 85, 1136, 1146, 1267, 1488, 1619
Hpy188III TCNNGA 7 cut(s) 505, 683, 720, 891, 1043, 1154, 1540
Hpy8I GTNNAC 2 cut(s) 385, 1573
HpyAV CCTTC 2 cut(s) 423, 1267
HpyCH4III ACNGT 2 cut(s) 389, 572
HpyCH4V TGCA 4 cut(s) 232, 248, 403, 763
HpyF10VI GCNNNNNNNGC 2 cut(s) 764, 1334
HpyF3I CTNAG 5 cut(s) 13, 213, 684, 1155, 1284
Kzo9I GATC 9 cut(s) 21, 154, 982, 1053, 1078, 1178, 1255, 1297, 1305
LmnI GCTCC 5 cut(s) 38, 668, 853, 1115, 1600
Lsp1109I GCAGC 3 cut(s) 244, 1195, 1321
LweI GCATC 3 cut(s) 103, 571, 1368
MaeI CTAG 3 cut(s) 236, 657, 1554
MaeIII GTNAC 5 cut(s) 466, 526, 934, 959, 1520
MalI GATC 9 cut(s) 23, 156, 984, 1055, 1080, 1180, 1257, 1299, 1307
MbiI CCGCTC 1 cut(s) 457
MboI GATC 9 cut(s) 21, 154, 982, 1053, 1078, 1178, 1255, 1297, 1305
MboII GAAGA 6 cut(s) 118, 423, 502, 1250, 1445, 1621
MfeI CAATTG 1 cut(s) 474
MflI RGATCY 3 cut(s) 154, 1053, 1255
MhlI GDGCHC 3 cut(s) 45, 673, 858
MlyI GAGTC 1 cut(s) 1399
MmeI TCCRAC 2 cut(s) 309, 831
MroXI GAANNNNTTC 1 cut(s) 1613
MseI TTAA 8 cut(s) 120, 540, 639, 651, 1100, 1320, 1443, 1514
MslI CAYNNNNRTG 2 cut(s) 596, 1123
MspCI CTTAAG 1 cut(s) 1513
MspI CCGG 4 cut(s) 58, 535, 1303, 1598
MspR9I CCNGG 6 cut(s) 59, 666, 744, 879, 1476, 1598
MunI CAATTG 1 cut(s) 474
MvaI CCWGG 4 cut(s) 666, 744, 879, 1476
MvnI CGCG 1 cut(s) 1059
MwoI GCNNNNNNNGC 2 cut(s) 764, 1334
NciI CCSGG 2 cut(s) 59, 1598
NcoI CCATGG 1 cut(s) 591
NdeII GATC 9 cut(s) 21, 154, 982, 1053, 1078, 1178, 1255, 1297, 1305
NlaIV GGNNCC 2 cut(s) 453, 1130
NmeAIII GCCGAG 1 cut(s) 127
NmuCI GTSAC 1 cut(s) 959
NspI RCATGY 4 cut(s) 136, 775, 1349, 1582
NspV TTCGAA 1 cut(s) 359
PagI TCATGA 1 cut(s) 1042
PaqCI CACCTGC 1 cut(s) 154
PceI AGGCCT 1 cut(s) 1511
PcsI WCGNNNNNNNCGW 1 cut(s) 910
PdmI GAANNNNTTC 1 cut(s) 1613
PfeI GAWTC 2 cut(s) 80, 182
PflMI CCANNNNNTGG 1 cut(s) 782
PfoI TCCNGGA 2 cut(s) 664, 1596
PinAI ACCGGT 1 cut(s) 534
PkrI GCNGC 4 cut(s) 98, 234, 1210, 1336
PleI GAGTC 1 cut(s) 1399
PpsI GAGTC 1 cut(s) 1399
PshBI ATTAAT 1 cut(s) 1100
Psp124BI GAGCTC 1 cut(s) 673
Psp6I CCWGG 4 cut(s) 664, 742, 877, 1474
PspFI CCCAGC 1 cut(s) 1582
PspGI CCWGG 4 cut(s) 664, 742, 877, 1474
PspN4I GGNNCC 2 cut(s) 453, 1130
PspPI GGNCC 4 cut(s) 680, 722, 1128, 1217
PstNI CAGNNNCTG 1 cut(s) 511
PsuI RGATCY 3 cut(s) 154, 1053, 1255
RsaI GTAC 2 cut(s) 391, 1065
RsaNI GTAC 2 cut(s) 390, 1064
RseI CAYNNNNRTG 2 cut(s) 596, 1123
SacI GAGCTC 1 cut(s) 673
SaqAI TTAA 8 cut(s) 120, 540, 639, 651, 1100, 1320, 1443, 1514
SatI GCNGC 4 cut(s) 97, 233, 1209, 1335
Sau3AI GATC 9 cut(s) 21, 154, 982, 1053, 1078, 1178, 1255, 1297, 1305
Sau96I GGNCC 4 cut(s) 680, 722, 1128, 1217
SchI GAGTC 1 cut(s) 1399
ScrFI CCNGG 6 cut(s) 59, 666, 744, 879, 1476, 1598
SduI GDGCHC 3 cut(s) 45, 673, 858
SfaNI GCATC 3 cut(s) 103, 571, 1368
SfuI TTCGAA 1 cut(s) 359
SinI GGWCC 4 cut(s) 680, 722, 1128, 1217
SmiMI CAYNNNNRTG 2 cut(s) 596, 1123
SmlI CTYRAG 2 cut(s) 158, 1513
SmoI CTYRAG 2 cut(s) 158, 1513
SpeI ACTAGT 1 cut(s) 656
SseBI AGGCCT 1 cut(s) 1511
SsiI CCGC 4 cut(s) 97, 455, 758, 1057
SspMI CTAG 3 cut(s) 236, 657, 1554
SstI GAGCTC 1 cut(s) 673
StuI AGGCCT 1 cut(s) 1511
StyD4I CCNGG 6 cut(s) 57, 664, 742, 877, 1474, 1596
StyI CCWWGG 1 cut(s) 591
TaaI ACNGT 2 cut(s) 389, 572
TaqI TCGA 3 cut(s) 359, 1086, 1539
TatI WGTACW 1 cut(s) 1063
TauI GCSGC 1 cut(s) 99
TfiI GAWTC 2 cut(s) 80, 182
Tru1I TTAA 8 cut(s) 120, 540, 639, 651, 1100, 1320, 1443, 1514
Tru9I TTAA 8 cut(s) 120, 540, 639, 651, 1100, 1320, 1443, 1514
TscAI CASTG 3 cut(s) 217, 577, 625
TseFI GTSAC 1 cut(s) 959
TseI GCWGC 3 cut(s) 232, 1208, 1334
Tsp45I GTSAC 1 cut(s) 959
TspDTI ATGAA 6 cut(s) 208, 744, 930, 1017, 1326, 1454
TspRI CASTG 3 cut(s) 217, 577, 625
Van91I CCANNNNNTGG 1 cut(s) 782
Vha464I CTTAAG 1 cut(s) 1513
VpaK11BI GGWCC 4 cut(s) 680, 722, 1128, 1217
VspI ATTAAT 1 cut(s) 1100
XagI CCTNNNNNAGG 1 cut(s) 1136
XapI RAATTY 4 cut(s) 6, 1313, 1460, 1612
XceI RCATGY 4 cut(s) 136, 775, 1349, 1582
XcmI CCANNNNNNNNNTGG 1 cut(s) 292
XmnI GAANNNNTTC 1 cut(s) 1613
XspI CTAG 3 cut(s) 236, 657, 1554
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.